ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAC6_ORYSA (Q6ZHA3) Rac-like GTP-binding protein 6 (OsRac6) (GTP... 35 0.089
2KDSB_CHLCV (Q822T3) 3-deoxy-manno-octulosonate cytidylyltransfer... 30 3.7
3RAC1_ARATH (Q38902) Rac-like GTP-binding protein ARAC1 (GTPase p... 30 4.9
4RAC6_ARATH (Q9SBJ6) Rac-like GTP-binding protein ARAC6 (GTPase p... 29 6.4
5RAC1_BETVU (Q39435) Rac-like GTP-binding protein RHO1 (RHO1Bv) 29 8.3

>RAC6_ORYSA (Q6ZHA3) Rac-like GTP-binding protein 6 (OsRac6) (GTPase protein|
           RacB)
          Length = 197

 Score = 35.4 bits (80), Expect = 0.089
 Identities = 20/31 (64%), Positives = 20/31 (64%)
 Frame = -1

Query: 508 KGVFDAAIKVVLXXXXXXXXXXXQRGACSIL 416
           KGVFDAAIKVVL           QRGACSIL
Sbjct: 167 KGVFDAAIKVVLQPPKAKKKKKAQRGACSIL 197



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>KDSB_CHLCV (Q822T3) 3-deoxy-manno-octulosonate cytidylyltransferase (EC|
           2.7.7.38) (CMP-KDO synthetase)
           (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS)
          Length = 254

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
 Frame = +1

Query: 139 EIPSTKQVT*IATTCQSHEIITRQEE----EKSNKW-------IARCLDKETLLQLPVXX 285
           E P  + VT +A T  SHEI+T Q+     +K+ K        I   L KET + L +  
Sbjct: 125 EFPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHILKKETPIYLHIGV 184

Query: 286 XXXXXXXXRDDDHESAAPLKQ-----DVTII*HGGN 378
                    +    S  PL Q      + I+ HGG+
Sbjct: 185 YAFRRNALFNYIESSPTPLSQAEDLEQLRILEHGGS 220



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>RAC1_ARATH (Q38902) Rac-like GTP-binding protein ARAC1 (GTPase protein ROP3)|
          Length = 197

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -1

Query: 508 KGVFDAAIKVVLXXXXXXXXXXXQRGACSIL 416
           KGVFDAAI+VVL            + ACSIL
Sbjct: 167 KGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197



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>RAC6_ARATH (Q9SBJ6) Rac-like GTP-binding protein ARAC6 (GTPase protein ROP5)|
          Length = 197

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -1

Query: 508 KGVFDAAIKVVLXXXXXXXXXXXQRGACSIL 416
           KGVFDAAI+VVL            + ACSIL
Sbjct: 167 KGVFDAAIRVVLQPPKQKKKKNKAQKACSIL 197



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>RAC1_BETVU (Q39435) Rac-like GTP-binding protein RHO1 (RHO1Bv)|
          Length = 197

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -1

Query: 508 KGVFDAAIKVVLXXXXXXXXXXXQRGACSIL 416
           K VFDAAIKVVL            + ACSIL
Sbjct: 167 KAVFDAAIKVVLQPPKTKKKKSKAQKACSIL 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,662,292
Number of Sequences: 219361
Number of extensions: 899233
Number of successful extensions: 1784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1784
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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