ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34b12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190249.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 972 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 934 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 875 Query: 457 atttgatcaccgcctccagctttttcttgtcttgcaa 493 |||| ||| | |||| ||||| |||| |||||||| Sbjct: 874 atttaatcgcttcctcaagcttcttctgatcttgcaa 838
>gb|AF429948.1| Oryza sativa putative fructokinase I mRNA, complete cds Length = 1135 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 995 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 936 Query: 457 atttgatcaccgcctccagctttttcttgtcttgcaa 493 |||| ||| | |||| ||||| |||| |||||||| Sbjct: 935 atttaatcgcttcctcaagcttcttctgatcttgcaa 899 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 289 tgctcctgatccagaacagcgtacaatacaatttgc 324 ||||||||||||||| |||| ||||||||||||||| Sbjct: 1107 tgctcctgatccagatcagcatacaatacaatttgc 1072
>dbj|AK120887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029D05, full insert sequence Length = 1216 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 800 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 741 Query: 457 atttgatcaccgcctccagctttttcttgtcttgcaa 493 |||| ||| | |||| ||||| |||| |||||||| Sbjct: 740 atttaatcgcttcctcaagcttcttctgatcttgcaa 704 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 289 tgctcctgatccagaacagcgtacaatacaatttgc 324 ||||||||||||||| |||| ||||||||||||||| Sbjct: 912 tgctcctgatccagatcagcatacaatacaatttgc 877
>dbj|AK060500.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F08, full insert sequence Length = 1380 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 1156 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 1097 Query: 457 atttgatcaccgcctccagctttttcttgtcttgcaa 493 |||| ||| | |||| ||||| |||| |||||||| Sbjct: 1096 atttaatcgcttcctcaagcttcttctgatcttgcaa 1060 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 289 tgctcctgatccagaacagcgtacaatacaatttgc 324 ||||||||||||||| |||| ||||||||||||||| Sbjct: 1268 tgctcctgatccagatcagcatacaatacaatttgc 1233
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 38878635 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 38878694 Query: 457 attt 460 |||| Sbjct: 38878695 attt 38878698 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 289 tgctcctgatccagaacagcgtacaatacaatttgc 324 ||||||||||||||| |||| ||||||||||||||| Sbjct: 38878523 tgctcctgatccagatcagcatacaatacaatttgc 38878558
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 151517 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 151576 Query: 457 attt 460 |||| Sbjct: 151577 attt 151580 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 289 tgctcctgatccagaacagcgtacaatacaatttgc 324 ||||||||||||||| |||| ||||||||||||||| Sbjct: 151405 tgctcctgatccagatcagcatacaatacaatttgc 151440
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 456 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 43421 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 43480 Query: 457 attt 460 |||| Sbjct: 43481 attt 43484 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 289 tgctcctgatccagaacagcgtacaatacaatttgc 324 ||||||||||||||| |||| ||||||||||||||| Sbjct: 43309 tgctcctgatccagatcagcatacaatacaatttgc 43344
>gb|AY104222.1| Zea mays PCO070293 mRNA sequence Length = 1331 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 397 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccaca 445 ||||||| || ||||| || || |||||||||||||||||||||||||| Sbjct: 1040 tgggcaaagacgggatcgcacccttcttcgtggcggtgattgctccaca 992
>gb|DQ235199.1| Solanum tuberosum clone 171E03 fructokinase-like mRNA, complete cds Length = 1245 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 408 gggattgcccctttcttcgtggcggtgattgctccacatgc 448 |||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 1015 gggattgctcctttcttggtggttgtgatggctccacatgc 975
>gb|DQ235181.1| Solanum tuberosum clone 163C10 fructokinase-like mRNA, complete cds Length = 1245 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 408 gggattgcccctttcttcgtggcggtgattgctccacatgc 448 |||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 1015 gggattgctcctttcttggtggttgtgatggctccacatgc 975
>gb|AF530592.1| Petunia integrifolia subsp. inflata putative fructokinase 2 (S1-3.16) gene, complete cds Length = 9183 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 408 gggattgcccctttcttcgtggcggtgattgctccacatgc 448 |||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 7421 gggattgctcctttctttgtggttgtgatggctccacatgc 7381
>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland Research Institute) complete sequence Length = 237374 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ggcaaaacaaaaaggcaagca 263 ||||||||||||||||||||| Sbjct: 114060 ggcaaaacaaaaaggcaagca 114040
>gb|AC006376.2|AC006376 Homo sapiens BAC clone RP11-386L3 from Y, complete sequence Length = 172007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttgtcaaaaattgagaacata 63 ||||||||||||||||||||| Sbjct: 161120 ttgtcaaaaattgagaacata 161100
>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence Length = 217989 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 aaaacaaaaaggcaagcaggggta 269 |||||||||||| ||||||||||| Sbjct: 168178 aaaacaaaaaggaaagcaggggta 168155
>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence Length = 246921 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 aaaacaaaaaggcaagcaggggta 269 |||||||||||| ||||||||||| Sbjct: 71215 aaaacaaaaaggaaagcaggggta 71192
>gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Hospital Oakland Research Institute) complete sequence Length = 237247 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcaaaacaaaaaggcaagca 263 |||||||||||||||||||| Sbjct: 161972 gcaaaacaaaaaggcaagca 161991
>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five novel genes, two novel pseudogenes and the gene for a novel protein similar to the olfactory receptor family, complete sequence Length = 153649 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 96005 aatagggcaaaacaaaaagg 95986
>emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chromosome 1 Contains a pseudogene similar to part of DEAD/H box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (DDX11), two novel pseudogenes, nine novel genes, two novel proteins similar to the olfactory receptor family, a capicua homolog (Drosophila) (CIC) pseudogene and two CpG islands, complete sequence Length = 166904 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 84660 aatagggcaaaacaaaaagg 84679
>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a fatty acid binding protein, muscle and heart (mammary-derived growth inhibitor) pseudogene and part of the AKT3 gene for v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma), complete sequence Length = 127036 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ttccttgtcaaaaattgagaacat 62 ||||||||||||||| |||||||| Sbjct: 66581 ttccttgtcaaaaatggagaacat 66604
>emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chromosome 6 Contains putative novel gene, complete sequence Length = 53890 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 41891 aatagggcaaaacaaaaagg 41872
>emb|AL390765.17| Human DNA sequence from clone RP11-509I1 on chromosome 1 Contains the 5' end of the GNG4 gene for guanine nucleotide binding (G protein) gamma 4 protein, the 3' end of the CHS1 gene for Chediak-Higashi syndrome 1 protein and a CpG island, complete sequence Length = 80101 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 gattgcccctttcttcgtgg 429 |||||||||||||||||||| Sbjct: 5517 gattgcccctttcttcgtgg 5498
>gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complete sequence Length = 157951 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 4496 aatagggcaaaacaaaaagg 4477
>gb|AC009334.8| Homo sapiens chromosome 1, clone RP11-45L2, complete sequence Length = 165618 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 gattgcccctttcttcgtgg 429 |||||||||||||||||||| Sbjct: 162542 gattgcccctttcttcgtgg 162561
>dbj|AK032510.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430575D21 product:hypothetical Microbodies C-terminal targeting signal/CUB domain/Low density lipoprotein (LDL)-receptor class A (LDLRA) domain containing protein, full insert sequence Length = 2399 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 aaaacaaaaaggcaagcaggggta 269 |||||||||||| ||||||||||| Sbjct: 2097 aaaacaaaaaggaaagcaggggta 2074
>dbj|AK043710.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830022O03 product:hypothetical Microbodies C-terminal targeting signal/LDL-receptor class A (LDLRA) domain profile/CUB domain/Low density lipoprotein (LDL)-receptor class A (LDLRA) domain/CUB domain profile containing protein, full insert sequence Length = 3803 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 aaaacaaaaaggcaagcaggggta 269 |||||||||||| ||||||||||| Sbjct: 2566 aaaacaaaaaggaaagcaggggta 2543
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 21790029 aaaattgagaacataaacca 21790010
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 7099848 aaaattgagaacataaacca 7099867 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 6802735 aaaattgagaacataaacca 6802754
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acgccttctccatcagccgc 380 |||||||||||||||||||| Sbjct: 21091482 acgccttctccatcagccgc 21091501
>gb|AC012005.4|AC012005 Homo sapiens clone RP11-533E23, complete sequence Length = 189557 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 126773 aatagggcaaaacaaaaagg 126754
>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence Length = 150642 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 28393 aatagggcaaaacaaaaagg 28412
>gb|AC006328.5|AC006328 Homo sapiens BAC clone RP11-102O5 from Y, complete sequence Length = 177769 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 13803 aatagggcaaaacaaaaagg 13822
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 3536154 aatagggcaaaacaaaaagg 3536173 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 2512224 aatagggcaaaacaaaaagg 2512205
>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence Length = 120139 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 97614 aatagggcaaaacaaaaagg 97595
>gb|AF281920.1|AF281920 Homo sapiens clone 16qtel_c53bt7 sequence Length = 485 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 266 aatagggcaaaacaaaaagg 285
>gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, complete sequence Length = 38954 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 16751 aatagggcaaaacaaaaagg 16770
>gb|AC137934.1| Homo sapiens chromosome 16 clone XXcos-yA11c16, complete sequence Length = 35141 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 18550 aatagggcaaaacaaaaagg 18531
>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence Length = 121664 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 55375 aatagggcaaaacaaaaagg 55394
>gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, complete sequence Length = 16515 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 12598 aatagggcaaaacaaaaagg 12579
>gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, complete sequence Length = 36966 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 898 aatagggcaaaacaaaaagg 917
>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0696F12 Length = 165227 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acgccttctccatcagccgc 380 |||||||||||||||||||| Sbjct: 12843 acgccttctccatcagccgc 12862
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_A12 Length = 152269 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acgccttctccatcagccgc 380 |||||||||||||||||||| Sbjct: 134781 acgccttctccatcagccgc 134800
>emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on chromosome 1, complete sequence Length = 93321 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 38056 aatagggcaaaacaaaaagg 38037
>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0002E10 Length = 140486 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 53454 aaaattgagaacataaacca 53473
>dbj|AP005754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0089L03 Length = 172106 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 155137 aaaattgagaacataaacca 155156
>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0674B07 Length = 192191 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 145334 aaaattgagaacataaacca 145353
>emb|AJ487038.1|CAR487038 Cicer arietinum partial mRNA for fructokinase-like protein, clone CanPFKB Length = 972 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 435 attgctccacatgcgttggcaaatttga 462 |||||||||||||| || |||||||||| Sbjct: 642 attgctccacatgcatttgcaaatttga 615
>dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:CMC-68E4, telomere region, complete sequence Length = 40302 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aatagggcaaaacaaaaagg 257 |||||||||||||||||||| Sbjct: 14091 aatagggcaaaacaaaaagg 14110
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 21718374 aaaattgagaacataaacca 21718355
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaattgagaacataaacca 68 |||||||||||||||||||| Sbjct: 22522 aaaattgagaacataaacca 22541
>emb|AL844530.7| Mouse DNA sequence from clone RP23-248L2 on chromosome 2, complete sequence Length = 169779 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 gcaaaacaaaaaggcaagcagggg 267 |||||||| ||||||||||||||| Sbjct: 77709 gcaaaacagaaaggcaagcagggg 77732
>emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 151930 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gaaatagggcaaaacaaaaa 255 |||||||||||||||||||| Sbjct: 129342 gaaatagggcaaaacaaaaa 129323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,524,125 Number of Sequences: 3902068 Number of extensions: 4524125 Number of successful extensions: 79431 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79230 Number of HSP's gapped (non-prelim): 201 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
