ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb) 37 0.023
2CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin) 35 0.067

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -3

Query: 422 EPTGERVQVH*PEAQGPGDGVRAGAAEYIRDGEEP 318
           EP G+  Q   P+AQGPG+GVR G AE  ++G EP
Sbjct: 257 EPQGKDRQGTRPQAQGPGEGVRPGKAE--KEGAEP 289



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>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 431 GRGEPTGERVQVH*PEAQG--PGDGVRAGAAEYIRDGEEPPGERDAAGATTK*RRPRQ 264
           G  +P  E V+V   E +G  PG+ V   AAE      EP G  DAAG      RP++
Sbjct: 264 GSPQPRSEAVEVAAAENEGHSPGESVEDAAAEEAAGTREPEGSEDAAGEDGDQGRPQE 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,856,954
Number of Sequences: 219361
Number of extensions: 1426252
Number of successful extensions: 3936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3928
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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