Clone Name | rbart34b06 |
---|---|
Clone Library Name | barley_pub |
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 72.4 bits (176), Expect = 6e-13 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = -3 Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294 C E N A FN + ++ +LS +LPN+T +GD+Y F +++ P +GF PC Sbjct: 336 CNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPC 395 Query: 293 CTLGKVRXXXX-XXXXXXXCKDRSKYVFWDEYHPTDRANELIALETLKR 150 C +G + + S Y+FWD HP+ RA E+ + +K+ Sbjct: 396 CKIGLTKGGVFCKERTLKNMSNASSYLFWDGLHPSQRAYEISNRKLVKK 444
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 67.8 bits (164), Expect = 1e-11 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Frame = -3 Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294 C E N + FN + ++ +LS +LPN+TF + D+Y +++ P +GF + PC Sbjct: 419 CNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPC 478 Query: 293 CTLGKVRXXXX-XXXXXXXCKDRSKYVFWDEYHPTDRANELI 171 C G + C + S Y+FWD HPT RA + I Sbjct: 479 CKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 44.3 bits (103), Expect = 2e-04 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 13/112 (11%) Frame = -3 Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294 C ++ N++A FN + ++ +L LP ATF D+Y + P HGF C Sbjct: 246 CAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGFEFPLITC 305 Query: 293 CTL-GKVRXXXXXXXXXXXCKD------------RSKYVFWDEYHPTDRANE 177 C GK D S V WD H T+ ANE Sbjct: 306 CGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANE 357
>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)| Length = 513 Score = 41.2 bits (95), Expect = 0.001 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Frame = -2 Query: 345 HHRPALHARLQQLPRAMLHARQGEADAHLHPAFHALQGPQQVRVLG*VPPHGQGQRAH-R 169 H +PA HA QQ + H Q + H PA H P Q + Q Q A Sbjct: 335 HAKPAQHAAQQQHAKPAQHVAQQQQQQHAKPAAHTAAKPVQ--------HNAQQQHAKPA 386 Query: 168 ARDAQAPQHHSRCQQHLQLACHGRRSSKCIR 76 A A P H+ QQH + A H + + R Sbjct: 387 AHTAAKPVQHNAAQQHAKPAAHAKPAVNAAR 417
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 40.4 bits (93), Expect = 0.002 Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 13/114 (11%) Frame = -3 Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294 C N LA FN + EL +SL A + DVY ++ HGF S C Sbjct: 244 CVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGFKGSLVSC 303 Query: 293 CTLG-------------KVRXXXXXXXXXXXCKDRSKYVFWDEYHPTDRANELI 171 C G K C + K V WD H T AN+ I Sbjct: 304 CGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFI 357
>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent| haemolysin) (LDH) (Atypical phospholipase) (Phospholipase A2) (Lysophospholipase) Length = 418 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Frame = -3 Query: 368 DVYDYFQDIIDRPYMHGFNNSHAPCCTLGKVRXXXXXXXXXXXCK----DRSKYVFWDEY 201 D + F+ + P HGF N+ PC + + + K+VFWD Sbjct: 333 DTHALFETLTSAPEEHGFVNASDPCLDINRSSSVDYMYTHALRSECAASGAEKFVFWDVT 392 Query: 200 HPTDRANELIALETLKRLN 144 HPT + +A + L+ N Sbjct: 393 HPTTATHRYVAEKMLESSN 411
>STAU_DROME (P25159) Maternal effect protein staufen| Length = 1026 Score = 33.1 bits (74), Expect = 0.39 Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Frame = -2 Query: 339 RPALHARLQQLPRAMLHARQGEADAHLHPAFHALQGP---QQVRVLG*VPPHGQGQRAHR 169 RPA H R A H A HLHP GP QQ + PP Q HR Sbjct: 9 RPAPHIR------AAHHHSHSHAHMHLHPGMEQHLGPSLQQQQQ-----PPPPPQQPPHR 57 Query: 168 ARDAQAPQHHSRCQQHLQ 115 A+ HH QQ Q Sbjct: 58 DLHARLNHHHLHAQQQQQ 75
>MIAA_XYLFA (Q9PH56) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 317 Score = 32.3 bits (72), Expect = 0.66 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = -2 Query: 471 PGVYQQARPQLQQAGRRRDQGAVRVLAQRDVPVRGRVRLLPGHHRPALHARLQQLPRAML 292 P Q+A + +GR + L QR +P+R +L HR LH R+ Q +AML Sbjct: 162 PQRIQRALEVYRVSGRSMSDWQKQPLKQR-LPLRVLKLVLAPTHRKVLHFRIAQRFKAML 220 Query: 291 -HARQGEADA-HLHPAFHALQGP 229 + E +A HP+ HA+ P Sbjct: 221 DNGLLAEVNALRTHPSIHAMARP 243
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 31.2 bits (69), Expect = 1.5 Identities = 33/124 (26%), Positives = 52/124 (41%) Frame = -2 Query: 456 QARPQLQQAGRRRDQGAVRVLAQRDVPVRGRVRLLPGHHRPALHARLQQLPRAMLHARQG 277 Q + Q QQ G+ + QG ++ Q P +G+ GH + + ++Q + + QG Sbjct: 1787 QQQQQQQQHGQAQSQGQIQ--GQGQAPGQGQAPG-QGHAQGQVQGQVQGQVQGQV---QG 1840 Query: 276 EADAHLHPAFHALQGPQQVRVLG*VPPHGQGQRAHRARDAQAPQHHSRCQQHLQLACHGR 97 + +QG Q +V G P Q Q A +R QH QH Q A H R Sbjct: 1841 Q-----------VQGQVQGQVQGQAPGQVQPQHAQHSRHTPNSQH----AQHTQQAQHAR 1885 Query: 96 RSSK 85 + + Sbjct: 1886 NAQQ 1889
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.4 bits (67), Expect = 2.5 Identities = 42/137 (30%), Positives = 52/137 (37%), Gaps = 20/137 (14%) Frame = -2 Query: 459 QQARPQLQQAGRRRDQGAVRVLAQRDVPVRGRVRLLP---GHHRPALHARL--QQL---- 307 QQ + Q QQ Q A++ Q+ V+ L P G P+ H L QQL Sbjct: 3460 QQQQQQQQQQQHLLGQVAIQQQQQQGPGVQTNQALGPKPQGLMPPSSHQGLLVQQLSPQP 3519 Query: 306 ---PRAMLHARQGEADAHLHPAFHALQGPQ------QVRVLG*--VPPHGQGQRAHRARD 160 P+ ML Q HP QGP Q RVL + GQG HR Sbjct: 3520 PQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQGLMGHRLVT 3579 Query: 159 AQAPQHHSRCQQHLQLA 109 AQ Q + QQ +A Sbjct: 3580 AQQQQQQQQHQQQGSMA 3596
>SYC_AZOBR (O07045) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 448 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 209 PRTRTCCGPCRAWKA 253 PR TCC PCR W++ Sbjct: 134 PRKGTCCSPCRRWRS 148
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 29.3 bits (64), Expect = 5.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -2 Query: 201 PPHGQGQRAHRARDAQAPQHHSRCQQ 124 PP Q+ H + Q PQHH + QQ Sbjct: 130 PPQQNQQQQHHQQQQQQPQHHQQMQQ 155
>MIAA_XYLFT (Q87F70) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 317 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -2 Query: 381 VPVRGRVRLLPGHHRPALHARLQQLPRAML-HARQGEADA-HLHPAFHALQGP 229 +P+R +L HR LH R+ Q +AML + E +A HP+ HA+ P Sbjct: 191 LPLRVLKLVLAPTHRKVLHFRIAQRFKAMLDNGLLAEVNALRTHPSIHAMARP 243
>Y2095_RHIME (Q52999) Hypothetical protein R02095| Length = 1029 Score = 28.9 bits (63), Expect = 7.3 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 16/79 (20%) Frame = -2 Query: 354 LPGHHRPALHARLQQLPRAM----------------LHARQGEADAHLHPAFHALQGPQQ 223 LPG R LH L LP A+ L R G D + F L G Q Sbjct: 291 LPGGFRSTLHPLLNNLPEAVSGSAGQMGPTAAAVAALFERNGIRDPAVVDVFSYLLGAQG 350 Query: 222 VRVLG*VPPHGQGQRAHRA 166 R+ P ++AHRA Sbjct: 351 SRLQSNEDPKAIREKAHRA 369
>IF2_EHRCJ (Q3YS01) Translation initiation factor IF-2| Length = 848 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -3 Query: 467 ESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDI 342 E++N + L+FN +A A +KEL+ + +YD D+ Sbjct: 694 ETSNSIILAFNVKADAQVKELAKQRCVEINHYSVIYDIIDDV 735 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,785,778 Number of Sequences: 219361 Number of extensions: 969046 Number of successful extensions: 2874 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2866 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)