ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 72 6e-13
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 68 1e-11
3EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 44 2e-04
4PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV) 41 0.001
5FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 40 0.002
6HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 39 0.009
7STAU_DROME (P25159) Maternal effect protein staufen 33 0.39
8MIAA_XYLFA (Q9PH56) tRNA delta(2)-isopentenylpyrophosphate trans... 32 0.66
9VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21 31 1.5
10MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p... 30 2.5
11SYC_AZOBR (O07045) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 30 3.3
12GBF_DICDI (P36417) G-box-binding factor (GBF) 29 5.6
13MIAA_XYLFT (Q87F70) tRNA delta(2)-isopentenylpyrophosphate trans... 29 7.3
14Y2095_RHIME (Q52999) Hypothetical protein R02095 29 7.3
15IF2_EHRCJ (Q3YS01) Translation initiation factor IF-2 29 7.3

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = -3

Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294
           C E  N  A  FN +   ++ +LS +LPN+T  +GD+Y  F  +++ P  +GF     PC
Sbjct: 336 CNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPC 395

Query: 293 CTLGKVRXXXX-XXXXXXXCKDRSKYVFWDEYHPTDRANELIALETLKR 150
           C +G  +              + S Y+FWD  HP+ RA E+   + +K+
Sbjct: 396 CKIGLTKGGVFCKERTLKNMSNASSYLFWDGLHPSQRAYEISNRKLVKK 444



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = -3

Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294
           C E  N  +  FN +   ++ +LS +LPN+TF + D+Y     +++ P  +GF  +  PC
Sbjct: 419 CNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPC 478

Query: 293 CTLGKVRXXXX-XXXXXXXCKDRSKYVFWDEYHPTDRANELI 171
           C  G +             C + S Y+FWD  HPT RA + I
Sbjct: 479 CKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
 Frame = -3

Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294
           C ++ N++A  FN +   ++ +L   LP ATF   D+Y     +   P  HGF      C
Sbjct: 246 CAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGFEFPLITC 305

Query: 293 CTL-GKVRXXXXXXXXXXXCKD------------RSKYVFWDEYHPTDRANE 177
           C   GK               D             S  V WD  H T+ ANE
Sbjct: 306 CGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANE 357



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>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = -2

Query: 345 HHRPALHARLQQLPRAMLHARQGEADAHLHPAFHALQGPQQVRVLG*VPPHGQGQRAH-R 169
           H +PA HA  QQ  +   H  Q +   H  PA H    P Q         + Q Q A   
Sbjct: 335 HAKPAQHAAQQQHAKPAQHVAQQQQQQHAKPAAHTAAKPVQ--------HNAQQQHAKPA 386

Query: 168 ARDAQAPQHHSRCQQHLQLACHGRRSSKCIR 76
           A  A  P  H+  QQH + A H + +    R
Sbjct: 387 AHTAAKPVQHNAAQQHAKPAAHAKPAVNAAR 417



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
 Frame = -3

Query: 473 CQESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDIIDRPYMHGFNNSHAPC 294
           C    N LA  FN      + EL +SL  A   + DVY    ++      HGF  S   C
Sbjct: 244 CVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGFKGSLVSC 303

Query: 293 CTLG-------------KVRXXXXXXXXXXXCKDRSKYVFWDEYHPTDRANELI 171
           C  G             K             C +  K V WD  H T  AN+ I
Sbjct: 304 CGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFI 357



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = -3

Query: 368 DVYDYFQDIIDRPYMHGFNNSHAPCCTLGKVRXXXXXXXXXXXCK----DRSKYVFWDEY 201
           D +  F+ +   P  HGF N+  PC  + +              +       K+VFWD  
Sbjct: 333 DTHALFETLTSAPEEHGFVNASDPCLDINRSSSVDYMYTHALRSECAASGAEKFVFWDVT 392

Query: 200 HPTDRANELIALETLKRLN 144
           HPT   +  +A + L+  N
Sbjct: 393 HPTTATHRYVAEKMLESSN 411



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>STAU_DROME (P25159) Maternal effect protein staufen|
          Length = 1026

 Score = 33.1 bits (74), Expect = 0.39
 Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
 Frame = -2

Query: 339 RPALHARLQQLPRAMLHARQGEADAHLHPAFHALQGP---QQVRVLG*VPPHGQGQRAHR 169
           RPA H R      A  H     A  HLHP      GP   QQ +     PP    Q  HR
Sbjct: 9   RPAPHIR------AAHHHSHSHAHMHLHPGMEQHLGPSLQQQQQ-----PPPPPQQPPHR 57

Query: 168 ARDAQAPQHHSRCQQHLQ 115
              A+   HH   QQ  Q
Sbjct: 58  DLHARLNHHHLHAQQQQQ 75



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>MIAA_XYLFA (Q9PH56) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 317

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -2

Query: 471 PGVYQQARPQLQQAGRRRDQGAVRVLAQRDVPVRGRVRLLPGHHRPALHARLQQLPRAML 292
           P   Q+A    + +GR       + L QR +P+R    +L   HR  LH R+ Q  +AML
Sbjct: 162 PQRIQRALEVYRVSGRSMSDWQKQPLKQR-LPLRVLKLVLAPTHRKVLHFRIAQRFKAML 220

Query: 291 -HARQGEADA-HLHPAFHALQGP 229
            +    E +A   HP+ HA+  P
Sbjct: 221 DNGLLAEVNALRTHPSIHAMARP 243



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>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21|
          Length = 2189

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 33/124 (26%), Positives = 52/124 (41%)
 Frame = -2

Query: 456  QARPQLQQAGRRRDQGAVRVLAQRDVPVRGRVRLLPGHHRPALHARLQQLPRAMLHARQG 277
            Q + Q QQ G+ + QG ++   Q   P +G+     GH +  +  ++Q   +  +   QG
Sbjct: 1787 QQQQQQQQHGQAQSQGQIQ--GQGQAPGQGQAPG-QGHAQGQVQGQVQGQVQGQV---QG 1840

Query: 276  EADAHLHPAFHALQGPQQVRVLG*VPPHGQGQRAHRARDAQAPQHHSRCQQHLQLACHGR 97
            +           +QG  Q +V G  P   Q Q A  +R     QH     QH Q A H R
Sbjct: 1841 Q-----------VQGQVQGQVQGQAPGQVQPQHAQHSRHTPNSQH----AQHTQQAQHAR 1885

Query: 96   RSSK 85
             + +
Sbjct: 1886 NAQQ 1889



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>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 42/137 (30%), Positives = 52/137 (37%), Gaps = 20/137 (14%)
 Frame = -2

Query: 459  QQARPQLQQAGRRRDQGAVRVLAQRDVPVRGRVRLLP---GHHRPALHARL--QQL---- 307
            QQ + Q QQ      Q A++   Q+   V+    L P   G   P+ H  L  QQL    
Sbjct: 3460 QQQQQQQQQQQHLLGQVAIQQQQQQGPGVQTNQALGPKPQGLMPPSSHQGLLVQQLSPQP 3519

Query: 306  ---PRAMLHARQGEADAHLHPAFHALQGPQ------QVRVLG*--VPPHGQGQRAHRARD 160
               P+ ML   Q       HP     QGP       Q RVL    +   GQG   HR   
Sbjct: 3520 PQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQGLMGHRLVT 3579

Query: 159  AQAPQHHSRCQQHLQLA 109
            AQ  Q   + QQ   +A
Sbjct: 3580 AQQQQQQQQHQQQGSMA 3596



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>SYC_AZOBR (O07045) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 448

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 209 PRTRTCCGPCRAWKA 253
           PR  TCC PCR W++
Sbjct: 134 PRKGTCCSPCRRWRS 148



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>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 201 PPHGQGQRAHRARDAQAPQHHSRCQQ 124
           PP    Q+ H  +  Q PQHH + QQ
Sbjct: 130 PPQQNQQQQHHQQQQQQPQHHQQMQQ 155



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>MIAA_XYLFT (Q87F70) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 317

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 381 VPVRGRVRLLPGHHRPALHARLQQLPRAML-HARQGEADA-HLHPAFHALQGP 229
           +P+R    +L   HR  LH R+ Q  +AML +    E +A   HP+ HA+  P
Sbjct: 191 LPLRVLKLVLAPTHRKVLHFRIAQRFKAMLDNGLLAEVNALRTHPSIHAMARP 243



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>Y2095_RHIME (Q52999) Hypothetical protein R02095|
          Length = 1029

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
 Frame = -2

Query: 354 LPGHHRPALHARLQQLPRAM----------------LHARQGEADAHLHPAFHALQGPQQ 223
           LPG  R  LH  L  LP A+                L  R G  D  +   F  L G Q 
Sbjct: 291 LPGGFRSTLHPLLNNLPEAVSGSAGQMGPTAAAVAALFERNGIRDPAVVDVFSYLLGAQG 350

Query: 222 VRVLG*VPPHGQGQRAHRA 166
            R+     P    ++AHRA
Sbjct: 351 SRLQSNEDPKAIREKAHRA 369



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>IF2_EHRCJ (Q3YS01) Translation initiation factor IF-2|
          Length = 848

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 467 ESTNKLALSFNKQAGAVIKELSASLPNATFQFGDVYDYFQDI 342
           E++N + L+FN +A A +KEL+         +  +YD   D+
Sbjct: 694 ETSNSIILAFNVKADAQVKELAKQRCVEINHYSVIYDIIDDV 735


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,785,778
Number of Sequences: 219361
Number of extensions: 969046
Number of successful extensions: 2874
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2866
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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