Clone Name | rbart34b06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 156 gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccagaa 215 |||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 6748447 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 6748388 Query: 216 cacgtacttgctgcggtccttgcagagcgtggaaagcggggtgcaggtgagcgtcggcct 275 |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| Sbjct: 6748387 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 6748328 Query: 276 caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 335 |||| || |||| |||||| ||||| | ||||||||||| |||||| ||| || Sbjct: 6748327 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 6748268 Query: 336 gtcgatgatgtcctggaagtagtcgtacacgtccccgaactggaacgtcgcgtt 389 |||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct: 6748267 gtcgatgatgtcctggaagtagtcgtacgcctccccgaacctgaacgtcgcgtt 6748214
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 156 gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccagaa 215 |||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 78126 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 78067 Query: 216 cacgtacttgctgcggtccttgcagagcgtggaaagcggggtgcaggtgagcgtcggcct 275 |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| Sbjct: 78066 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 78007 Query: 276 caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 335 |||| || |||| |||||| ||||| | ||||||||||| |||||| ||| || Sbjct: 78006 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 77947 Query: 336 gtcgatgatgtcctggaagtagtcgtacacgtccccgaactggaacgtcgcgtt 389 |||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct: 77946 gtcgatgatgtcctggaagtagtcgtacgcctccccgaacctgaacgtcgcgtt 77893
>ref|NM_196893.1| Oryza sativa (japonica cultivar-group) putative early nodulin gene (Enod) related protein (OSJNBa0071K18.9), mRNA Length = 1384 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 180 gttggccctgtccgtggggtggtactcatcccagaacacgta 221 ||||||| | |||||||||||||| | |||||||||||||| Sbjct: 1037 gttggccttctccgtggggtggtaggcgtcccagaacacgta 996
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 180 gttggccctgtccgtggggtggtactcatcccagaacacgta 221 ||||||| | |||||||||||||| | |||||||||||||| Sbjct: 102279 gttggccttctccgtggggtggtaggcgtcccagaacacgta 102320
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 302 cgtgggagttgttgaagccgtgcatg 327 |||| ||||||||||||||||||||| Sbjct: 541770 cgtgagagttgttgaagccgtgcatg 541795
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 208 tcccagaacacgtacttgctgcggtc 233 |||||||||||||||||||| ||||| Sbjct: 10069294 tcccagaacacgtacttgctccggtc 10069319
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 180 gttggccctgtccgtggggtggtactcatcccagaacacgta 221 ||||||| | |||||||||||||| | |||||||||||||| Sbjct: 16557963 gttggccttctccgtggggtggtaggcgtcccagaacacgta 16557922 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 atgagctcgttggccctgtccgtggggtggta 203 ||||||| || |||||| |||||||||||||| Sbjct: 2475615 atgagcttgtaggccctctccgtggggtggta 2475584
>dbj|AK108201.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C12, full insert sequence Length = 1375 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 180 gttggccctgtccgtggggtggtactcatcccagaacacgta 221 ||||||| | |||||||||||||| | |||||||||||||| Sbjct: 1049 gttggccttctccgtggggtggtaggcgtcccagaacacgta 1008
>ref|NM_210165.1| Eremothecium gossypii AEL050Cp (AEL050C), mRNA Length = 2154 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 302 cgtgggagttgttgaagccgtgcatg 327 |||| ||||||||||||||||||||| Sbjct: 1501 cgtgagagttgttgaagccgtgcatg 1476
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 443 tgagggcgagcttgttggtaga 464 |||||||||||||||||||||| Sbjct: 1382335 tgagggcgagcttgttggtaga 1382314
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 180 gttggccctgtccgtggggtggtactcatcccagaacacgta 221 ||||||| | |||||||||||||| | |||||||||||||| Sbjct: 16566204 gttggccttctccgtggggtggtaggcgtcccagaacacgta 16566163 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 atgagctcgttggccctgtccgtggggtggta 203 ||||||| || |||||| |||||||||||||| Sbjct: 2475566 atgagcttgtaggccctctccgtggggtggta 2475535
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 208 tcccagaacacgtacttgctgcggtc 233 |||||||||||||||||||| ||||| Sbjct: 10069179 tcccagaacacgtacttgctccggtc 10069204
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 208 tcccagaacacgtacttgctgcggtc 233 |||||||||||||||||||| ||||| Sbjct: 93327 tcccagaacacgtacttgctccggtc 93302
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 cacgtccccgaactggaacgt 383 ||||||||||||||||||||| Sbjct: 2053172 cacgtccccgaactggaacgt 2053192
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 gtggaaagcggggtgcaggtg 264 ||||||||||||||||||||| Sbjct: 3404863 gtggaaagcggggtgcaggtg 3404843
>ref|NM_194800.1| Oryza sativa (japonica cultivar-group) putative anter-specific proline-rich protein (OSJNBa0029P06.18), mRNA Length = 972 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 atgagctcgttggccctgtccgtggggtggta 203 ||||||| || |||||| |||||||||||||| Sbjct: 932 atgagcttgtaggccctctccgtggggtggta 901
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 gccggtcgatgatgtcctgg 351 |||||||||||||||||||| Sbjct: 2352200 gccggtcgatgatgtcctgg 2352181
>ref|XM_806065.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506681.20) partial mRNA Length = 2625 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gtggaaagcggggtgcaggt 263 |||||||||||||||||||| Sbjct: 892 gtggaaagcggggtgcaggt 911
>ref|XM_814651.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506825.20) partial mRNA Length = 2637 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gtggaaagcggggtgcaggt 263 |||||||||||||||||||| Sbjct: 904 gtggaaagcggggtgcaggt 923
>gb|AY271930.1|AY271928S3 Pauropsalta johanae elongation factor-1 alpha gene, partial sequence Length = 489 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gtgctgttggcaacgactgt 140 |||||||||||||||||||| Sbjct: 58 gtgctgttggcaacgactgt 77
>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence Length = 122319 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 atgagctcgttggccctgtccgtggggtggta 203 ||||||| || |||||| |||||||||||||| Sbjct: 40814 atgagcttgtaggccctctccgtggggtggta 40783
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 atgagctcgttggccctgtccgtggggtggta 203 ||||||| || |||||| |||||||||||||| Sbjct: 132347 atgagcttgtaggccctctccgtggggtggta 132316
>dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107L07, full insert sequence Length = 1299 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 atgagctcgttggccctgtccgtggggtggta 203 ||||||| || |||||| |||||||||||||| Sbjct: 1041 atgagcttgtaggccctctccgtggggtggta 1010
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gcttgttggtagactcctgg 471 |||||||||||||||||||| Sbjct: 1852709 gcttgttggtagactcctgg 1852728 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,718,426 Number of Sequences: 3902068 Number of extensions: 2718426 Number of successful extensions: 47060 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46793 Number of HSP's gapped (non-prelim): 265 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)