ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
2dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
3ref|NM_196893.1| Oryza sativa (japonica cultivar-group) putative... 44 0.42
4gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 44 0.42
5gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 44 0.42
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
8dbj|AK108201.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
9ref|NM_210165.1| Eremothecium gossypii AEL050Cp (AEL050C), mRNA 44 0.42
10gb|AE000511.1| Helicobacter pylori 26695, complete genome 44 0.42
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
13emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.42
14gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 1.6
15gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.6
16ref|NM_194800.1| Oryza sativa (japonica cultivar-group) putative... 40 6.5
17emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.5
18ref|XM_806065.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.5
19ref|XM_814651.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.5
20gb|AY271930.1|AY271928S3 Pauropsalta johanae elongation factor-1... 40 6.5
21gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, c... 40 6.5
22gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, c... 40 6.5
23dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
24emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  210 bits (106), Expect = 3e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                           
Query: 156     gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccagaa 215
               |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||
Sbjct: 6748447 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 6748388

                                                                           
Query: 216     cacgtacttgctgcggtccttgcagagcgtggaaagcggggtgcaggtgagcgtcggcct 275
               |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| 
Sbjct: 6748387 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 6748328

                                                                           
Query: 276     caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 335
               ||||   || |||| |||||| |||||  | ||||||||||| ||||||     ||| ||
Sbjct: 6748327 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 6748268

                                                                     
Query: 336     gtcgatgatgtcctggaagtagtcgtacacgtccccgaactggaacgtcgcgtt 389
               |||||||||||||||||||||||||||| | |||||||||  ||||||||||||
Sbjct: 6748267 gtcgatgatgtcctggaagtagtcgtacgcctccccgaacctgaacgtcgcgtt 6748214



to top

>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0525F01
          Length = 151668

 Score =  210 bits (106), Expect = 3e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                         
Query: 156   gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccagaa 215
             |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||
Sbjct: 78126 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 78067

                                                                         
Query: 216   cacgtacttgctgcggtccttgcagagcgtggaaagcggggtgcaggtgagcgtcggcct 275
             |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| 
Sbjct: 78066 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 78007

                                                                         
Query: 276   caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 335
             ||||   || |||| |||||| |||||  | ||||||||||| ||||||     ||| ||
Sbjct: 78006 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 77947

                                                                   
Query: 336   gtcgatgatgtcctggaagtagtcgtacacgtccccgaactggaacgtcgcgtt 389
             |||||||||||||||||||||||||||| | |||||||||  ||||||||||||
Sbjct: 77946 gtcgatgatgtcctggaagtagtcgtacgcctccccgaacctgaacgtcgcgtt 77893



to top

>ref|NM_196893.1| Oryza sativa (japonica cultivar-group) putative early nodulin gene
            (Enod) related protein (OSJNBa0071K18.9), mRNA
          Length = 1384

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 180  gttggccctgtccgtggggtggtactcatcccagaacacgta 221
            ||||||| | ||||||||||||||  | ||||||||||||||
Sbjct: 1037 gttggccttctccgtggggtggtaggcgtcccagaacacgta 996



to top

>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
              sequence
          Length = 149758

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 180    gttggccctgtccgtggggtggtactcatcccagaacacgta 221
              ||||||| | ||||||||||||||  | ||||||||||||||
Sbjct: 102279 gttggccttctccgtggggtggtaggcgtcccagaacacgta 102320



to top

>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 302    cgtgggagttgttgaagccgtgcatg 327
              |||| |||||||||||||||||||||
Sbjct: 541770 cgtgagagttgttgaagccgtgcatg 541795



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 208      tcccagaacacgtacttgctgcggtc 233
                |||||||||||||||||||| |||||
Sbjct: 10069294 tcccagaacacgtacttgctccggtc 10069319



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 180      gttggccctgtccgtggggtggtactcatcccagaacacgta 221
                ||||||| | ||||||||||||||  | ||||||||||||||
Sbjct: 16557963 gttggccttctccgtggggtggtaggcgtcccagaacacgta 16557922



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 172     atgagctcgttggccctgtccgtggggtggta 203
               ||||||| || |||||| ||||||||||||||
Sbjct: 2475615 atgagcttgtaggccctctccgtggggtggta 2475584



to top

>dbj|AK108201.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C12, full
            insert sequence
          Length = 1375

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 180  gttggccctgtccgtggggtggtactcatcccagaacacgta 221
            ||||||| | ||||||||||||||  | ||||||||||||||
Sbjct: 1049 gttggccttctccgtggggtggtaggcgtcccagaacacgta 1008



to top

>ref|NM_210165.1| Eremothecium gossypii AEL050Cp (AEL050C), mRNA
          Length = 2154

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 302  cgtgggagttgttgaagccgtgcatg 327
            |||| |||||||||||||||||||||
Sbjct: 1501 cgtgagagttgttgaagccgtgcatg 1476



to top

>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 443     tgagggcgagcttgttggtaga 464
               ||||||||||||||||||||||
Sbjct: 1382335 tgagggcgagcttgttggtaga 1382314



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 180      gttggccctgtccgtggggtggtactcatcccagaacacgta 221
                ||||||| | ||||||||||||||  | ||||||||||||||
Sbjct: 16566204 gttggccttctccgtggggtggtaggcgtcccagaacacgta 16566163



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 172     atgagctcgttggccctgtccgtggggtggta 203
               ||||||| || |||||| ||||||||||||||
Sbjct: 2475566 atgagcttgtaggccctctccgtggggtggta 2475535



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 208      tcccagaacacgtacttgctgcggtc 233
                |||||||||||||||||||| |||||
Sbjct: 10069179 tcccagaacacgtacttgctccggtc 10069204



to top

>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 208   tcccagaacacgtacttgctgcggtc 233
             |||||||||||||||||||| |||||
Sbjct: 93327 tcccagaacacgtacttgctccggtc 93302



to top

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 363     cacgtccccgaactggaacgt 383
               |||||||||||||||||||||
Sbjct: 2053172 cacgtccccgaactggaacgt 2053192



to top

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 244     gtggaaagcggggtgcaggtg 264
               |||||||||||||||||||||
Sbjct: 3404863 gtggaaagcggggtgcaggtg 3404843



to top

>ref|NM_194800.1| Oryza sativa (japonica cultivar-group) putative anter-specific
           proline-rich protein (OSJNBa0029P06.18), mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 172 atgagctcgttggccctgtccgtggggtggta 203
           ||||||| || |||||| ||||||||||||||
Sbjct: 932 atgagcttgtaggccctctccgtggggtggta 901



to top

>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 332     gccggtcgatgatgtcctgg 351
               ||||||||||||||||||||
Sbjct: 2352200 gccggtcgatgatgtcctgg 2352181



to top

>ref|XM_806065.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506681.20) partial mRNA
          Length = 2625

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 gtggaaagcggggtgcaggt 263
           ||||||||||||||||||||
Sbjct: 892 gtggaaagcggggtgcaggt 911



to top

>ref|XM_814651.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506825.20) partial mRNA
          Length = 2637

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 gtggaaagcggggtgcaggt 263
           ||||||||||||||||||||
Sbjct: 904 gtggaaagcggggtgcaggt 923



to top

>gb|AY271930.1|AY271928S3 Pauropsalta johanae elongation factor-1 alpha gene, partial
           sequence
          Length = 489

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gtgctgttggcaacgactgt 140
           ||||||||||||||||||||
Sbjct: 58  gtgctgttggcaacgactgt 77



to top

>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence
          Length = 122319

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 172   atgagctcgttggccctgtccgtggggtggta 203
             ||||||| || |||||| ||||||||||||||
Sbjct: 40814 atgagcttgtaggccctctccgtggggtggta 40783



to top

>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 172    atgagctcgttggccctgtccgtggggtggta 203
              ||||||| || |||||| ||||||||||||||
Sbjct: 132347 atgagcttgtaggccctctccgtggggtggta 132316



to top

>dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107L07, full
            insert sequence
          Length = 1299

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 172  atgagctcgttggccctgtccgtggggtggta 203
            ||||||| || |||||| ||||||||||||||
Sbjct: 1041 atgagcttgtaggccctctccgtggggtggta 1010



to top

>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     gcttgttggtagactcctgg 471
               ||||||||||||||||||||
Sbjct: 1852709 gcttgttggtagactcctgg 1852728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,718,426
Number of Sequences: 3902068
Number of extensions: 2718426
Number of successful extensions: 47060
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46793
Number of HSP's gapped (non-prelim): 265
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top