ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EURL_MOUSE (Q9D7G4) Protein EURL homolog 30 2.3
2GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 s... 29 3.9
3SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 8.8
4SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 8.8
5SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 8.8

>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   KANWSFIYSMEKLLQLPTQCNKPSRHAL 90
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120



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>GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 subunit|
          Length = 364

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 22  FIYSMEKLLQLPTQCNKPSRHALKQQESIFKTWMHLDL 135
           FI SM    QL  + NK +R  +KQ   IFKT +H DL
Sbjct: 234 FIVSMSDYDQLDPEDNKYNR--MKQSYEIFKTIVHSDL 269



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>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 862

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 37  EKLLQLPTQCNKPSRHALKQQESIFKTW 120
           E+ L+ PT C       LK+ E +F TW
Sbjct: 429 ERYLEDPTSCEACGSPRLKRDEDVFDTW 456



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>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 862

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 37  EKLLQLPTQCNKPSRHALKQQESIFKTW 120
           E+ L+ PT C       LK+ E +F TW
Sbjct: 429 ERYLEDPTSCEACGSPRLKRDEDVFDTW 456



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>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 862

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 37  EKLLQLPTQCNKPSRHALKQQESIFKTW 120
           E+ L+ PT C       LK+ E +F TW
Sbjct: 429 ERYLEDPTSCEACGSPRLKRDEDVFDTW 456


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,299,479
Number of Sequences: 219361
Number of extensions: 349656
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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