>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete
             sequence
          Length = 153053

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 25    atttattcaatggagaaacttttacaactcccaa 58
             |||| ||||||||| |||||||||||||||||||
Sbjct: 35388 attttttcaatggaaaaacttttacaactcccaa 35355

>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence
          Length = 145544

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 25    atttattcaatggagaaacttttacaactcccaa 58
             |||| ||||||||| |||||||||||||||||||
Sbjct: 84355 attttttcaatggaaaaacttttacaactcccaa 84388

>gb|AC115031.11| Mus musculus chromosome 3, clone RP24-257J5, complete sequence
          Length = 170460

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 30     ttcaatggagaaacttttacaactcccaa 58
              ||||||||| |||||||||||||||||||
Sbjct: 151426 ttcaatggaaaaacttttacaactcccaa 151398

>emb|BX897690.13| Zebrafish DNA sequence from clone CH211-197O9 in linkage group 20,
             complete sequence
          Length = 128296

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 114   aacatggatgcatttggatttgc 136
             |||||||||||||||||||||||
Sbjct: 47497 aacatggatgcatttggatttgc 47475



 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   atggatgcatttggatttgc 136
             ||||||||||||||||||||
Sbjct: 46879 atggatgcatttggatttgc 46860

>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tttatttattcaatggagaa 41
             ||||||||||||||||||||
Sbjct: 63221 tttatttattcaatggagaa 63240

>gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complete sequence
          Length = 240260

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   taaagacgagggcttgaaaacacg 176
             |||||||||||||||| |||||||
Sbjct: 63798 taaagacgagggcttgtaaacacg 63775

>emb|AL356967.23| Human DNA sequence from clone RP11-427E4 on chromosome 6 Contains a
             novel pseudogene, complete sequence
          Length = 163869

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    attcaatggagaaactttta 48
             ||||||||||||||||||||
Sbjct: 39215 attcaatggagaaactttta 39196

>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tttatttattcaatggagaa 41
             ||||||||||||||||||||
Sbjct: 62061 tttatttattcaatggagaa 62080

>emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11,
              DP09G08, DP35C12 of chromosome 5  of Podospora anserina
          Length = 322194

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     ctcccaacacaatgcaacaa 71
              ||||||||||||||||||||
Sbjct: 259640 ctcccaacacaatgcaacaa 259621

>gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence
          Length = 154059

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     gaaggcaaactggagcttta 25
             ||||||||||||||||||||
Sbjct: 69953 gaaggcaaactggagcttta 69972

>gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome 12, complete sequence
          Length = 161791

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaggcaaactggagctttat 26
             ||||||||||||||||||||
Sbjct: 64903 aaggcaaactggagctttat 64884

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 22      tttatttattcaatggagaa 41
               ||||||||||||||||||||
Sbjct: 5376547 tttatttattcaatggagaa 5376566

>dbj|AK069089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B14, full
            insert sequence
          Length = 3756

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   tttatttattcaatggagaa 41
            ||||||||||||||||||||
Sbjct: 3680 tttatttattcaatggagaa 3699

>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15,
             complete sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gaaggcaaactggagcttta 25
             ||||||||||||||||||||
Sbjct: 25502 gaaggcaaactggagcttta 25483

>emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC DP35C12 of chromosome 5 of
             Podospora anserina
          Length = 101256

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcccaacacaatgcaacaa 71
             ||||||||||||||||||||
Sbjct: 62555 ctcccaacacaatgcaacaa 62574

>gb|AF241732.1| Homo sapiens chromosome X clone XXcos-P117 map p11.4, complete sequence
          Length = 42930

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    aatgcaacaaaccaagtag 80
             |||||||||||||||||||
Sbjct: 29050 aatgcaacaaaccaagtag 29068

>gb|AC130220.3| Mus musculus BAC clone RP23-140M6 from chromosome 6, complete sequence
          Length = 200785

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     aacacaatgcaacaaacca 75
              |||||||||||||||||||
Sbjct: 189896 aacacaatgcaacaaacca 189914

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 161    agggcttgaaaacacggcg 179
              |||||||||||||||||||
Sbjct: 642946 agggcttgaaaacacggcg 642964

>gb|AC118610.9| Mus musculus chromosome 6, clone RP23-178I17, complete sequence
          Length = 255673

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    aacacaatgcaacaaacca 75
             |||||||||||||||||||
Sbjct: 15450 aacacaatgcaacaaacca 15468

>gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, complete sequence
          Length = 208907

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     gacatgcacttaaacaaca 98
              |||||||||||||||||||
Sbjct: 136097 gacatgcacttaaacaaca 136115

>emb|CR376839.12| Zebrafish DNA sequence from clone DKEY-75G22 in linkage group 2,
             complete sequence
          Length = 127371

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tttattcaatggagaaact 44
             |||||||||||||||||||
Sbjct: 94019 tttattcaatggagaaact 94001

>gb|AC122875.2| Mus musculus BAC clone RP23-113B22 from 5, complete sequence
          Length = 152406

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 106   atcttcaaaacatggatgcattt 128
             |||||||||||| ||||||||||
Sbjct: 86965 atcttcaaaacacggatgcattt 86987

>gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 214386

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    aacttttacaactcccaac 59
             |||||||||||||||||||
Sbjct: 74954 aacttttacaactcccaac 74972

>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 120     gatgcatttggatttgcag 138
               |||||||||||||||||||
Sbjct: 2078172 gatgcatttggatttgcag 2078154

>emb|AL645752.9| Mouse DNA sequence from clone RP23-244K22 on chromosome 11 Contains the
             5' end of the Gabra1 gene for gamma-aminobutyric acid
             (GABA-A) receptor, subunit alpha 1, complete sequence
          Length = 116840

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 113   aaacatggatgcatttgga 131
             |||||||||||||||||||
Sbjct: 72580 aaacatggatgcatttgga 72562

>gb|U23170.2| Caenorhabditis elegans cosmid F58F12, complete sequence
          Length = 22625

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    tggagctttatttattcaa 34
             |||||||||||||||||||
Sbjct: 11344 tggagctttatttattcaa 11362

>gb|AC074120.9| Homo sapiens BAC clone RP11-724M22 from 4, complete sequence
          Length = 150013

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     tttacaactcccaacacaa 63
              |||||||||||||||||||
Sbjct: 105573 tttacaactcccaacacaa 105591

>gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone mth2-28b24, complete
             sequence
          Length = 112486

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   catggatgcatttggattt 134
             |||||||||||||||||||
Sbjct: 50160 catggatgcatttggattt 50178

>gb|AC158356.2| Mus musculus BAC clone RP23-475P8 from chromosome 13, complete sequence
          Length = 210995

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 95     aacaggaatcgatcttcaaaaca 117
              ||||||||| |||||||||||||
Sbjct: 189942 aacaggaatggatcttcaaaaca 189920

>emb|BX784036.6| Zebrafish DNA sequence from clone CH211-223P14 in linkage group 2,
             complete sequence
          Length = 162047

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tttatttattcaatggaga 40
             |||||||||||||||||||
Sbjct: 77363 tttatttattcaatggaga 77381

>gb|AC173996.2| Pan troglodytes chromosome X clone PTB-074P14 map human ortholog p11.4,
              complete sequence
          Length = 160565

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     aatgcaacaaaccaagtag 80
              |||||||||||||||||||
Sbjct: 100246 aatgcaacaaaccaagtag 100264

>dbj|AP006698.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04O06, TM0487,
             complete sequence
          Length = 108174

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    cacaatgcaacaaaccaag 77
             |||||||||||||||||||
Sbjct: 31893 cacaatgcaacaaaccaag 31911

>dbj|AP001818.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2222M9, complete
             sequence
          Length = 116321

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    tttacaactcccaacacaa 63
             |||||||||||||||||||
Sbjct: 87432 tttacaactcccaacacaa 87450


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,874,221
Number of Sequences: 3902068
Number of extensions: 1874221
Number of successful extensions: 131872
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131700
Number of HSP's gapped (non-prelim): 172
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)