ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, comp... 38 3.0
2gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complet... 38 3.0
3emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on ch... 38 3.0

>gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, complete sequence
          Length = 131909

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     ataaaatacaacacttaca 27
             |||||||||||||||||||
Sbjct: 46182 ataaaatacaacacttaca 46164



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>gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complete sequence
          Length = 159952

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     taaaatacaacacttacac 28
              |||||||||||||||||||
Sbjct: 103273 taaaatacaacacttacac 103255



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>emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on chromosome 4, complete
              sequence
          Length = 221319

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      ataaaatacaacacttaca 27
              |||||||||||||||||||
Sbjct: 199152 ataaaatacaacacttaca 199170


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 535,895
Number of Sequences: 3902068
Number of extensions: 535895
Number of successful extensions: 33078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33074
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 53
effective length of database: 17,151,101,840
effective search space: 909008397520
effective search space used: 909008397520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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