ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart34a12 |
|---|---|
| Clone Library Name | barley_pub |
>BIOD_MYCTU (O06620) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin| synthase) (DTB synthetase) (DTBS) Length = 226 Score = 31.2 bits (69), Expect = 0.99 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 271 CSVARYGVSRGNDDVAVLSELAGVTCASGM 182 C + G +RG+DD+A + LAGVT +G+ Sbjct: 36 CKPVQTGTARGDDDLAEVGRLAGVTQLAGL 65
>BIOD_MYCBO (O52587) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin| synthase) (DTB synthetase) (DTBS) Length = 226 Score = 31.2 bits (69), Expect = 0.99 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 271 CSVARYGVSRGNDDVAVLSELAGVTCASGM 182 C + G +RG+DD+A + LAGVT +G+ Sbjct: 36 CKPVQTGTARGDDDLAEVGRLAGVTQLAGL 65
>MSRB_STAHJ (Q4L6D3) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 30.0 bits (66), Expect = 2.2 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -1 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHFD + + G FT+ F +C + S +D++ L Sbjct: 26 FQNEYWNHFDKGIYVDKISGKPLFTSEEKFESNCGWPSFSKSIDDDEIIEL 76
>PURL_DEIRA (Q9RXT4) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 747 Score = 29.6 bits (65), Expect = 2.9 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Frame = -1 Query: 394 VHGVVGQTYRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVA--- 224 V+GVV D + H+ +PT+GG+ TF S P +V G+ R ++D+A Sbjct: 143 VNGVV------DGIAHYGNAIGVPTVGGEVTFHPSYQENPLVNVMALGLLR-HEDLATGT 195 Query: 223 ---VLSELAGVTCASGMDGKG 170 V +++ V +G DG G Sbjct: 196 MGEVGNQIVYVGSKTGRDGLG 216
>HLDE_WOLSU (Q7M9U1) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 474 Score = 29.6 bits (65), Expect = 2.9 Identities = 24/67 (35%), Positives = 34/67 (50%) Frame = -1 Query: 355 VNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVLSELAGVTCASGMDG 176 V DV+ T+GG A S+L A + SV GV +D+A EL G GM+ Sbjct: 36 VQVIDVKRETKTLGG-ACNVMSNLIALEASVLSCGVV--GEDLAG-RELLGFLQELGMES 91 Query: 175 KGVVCKK 155 KG++ +K Sbjct: 92 KGIITQK 98
>LIP2_ARATH (Q67ZU1) Triacylglycerol lipase 2 precursor (EC 3.1.1.3)| Length = 418 Score = 29.3 bits (64), Expect = 3.7 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 18/122 (14%) Frame = -1 Query: 415 LDALTDDVHGVVGQTYRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYG----- 251 L A+ D +HG+ GQ + Y+ H S+ T+ G A+F+ L S A Sbjct: 169 LPAMFDHIHGLTGQ--KIHYLGH-----SLGTLIGFASFSEKGLVDQVRSAAMLSPVAYL 221 Query: 250 --VSRGNDDVAVLSELAGVTCA---------SGMDGKGV--VCKK*NASCMHMVSVVLAV 110 ++ D+A + LA T SG+ G + +C K C +VSV+ Sbjct: 222 SHMTTVIGDIAAKTFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCYDLVSVITGK 281 Query: 109 HC 104 +C Sbjct: 282 NC 283
>PTH_SYNP6 (Q5N2J4) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 208 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -2 Query: 276 QTAAWRAMGSAVETTMSRCYLSSLVSPAPVA 184 Q A A+ S VET M+R SL +PAPVA Sbjct: 178 QEATETALRSGVETAMNRYNARSLEAPAPVA 208
>VGFR2_MOUSE (P35918) Vascular endothelial growth factor receptor 2 precursor| (EC 2.7.10.1) (VEGFR-2) (Protein-tyrosine kinase receptor flk-1) (Fetal liver kinase 1) (Kinase NYK) Length = 1367 Score = 29.3 bits (64), Expect = 3.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 79 WGYSTWQPCNARPVQHSPYACKK 147 W + + C+ RP Q SPYACK+ Sbjct: 460 WYWQLEEACSYRPGQTSPYACKE 482
>MSRB_STAS1 (Q49XN4) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 28.9 bits (63), Expect = 4.9 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = -1 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHF+ + + G FT+ F DC + + ++++ L Sbjct: 26 FQNEYWNHFEKGIYVDKISGKPLFTSEEKFESDCGWPSFSKALADEEIVEL 76
>MSRB_STAES (Q8CSK6) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 28.9 bits (63), Expect = 4.9 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = -1 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHF+ + + G FT+ F +C + + +D++ L Sbjct: 26 FQNEYWNHFEKGIYVDKLSGKPLFTSEDKFESNCGWPSFSKALNDDEIVEL 76
>MSRB_STAEQ (Q5HPB4) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 28.9 bits (63), Expect = 4.9 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = -1 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHF+ + + G FT+ F +C + + +D++ L Sbjct: 26 FQNEYWNHFEKGIYVDKLSGKPLFTSEDKFESNCGWPSFSKALNDDEIVEL 76
>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) (ATP-dependent RNA helicase #46) Length = 795 Score = 28.9 bits (63), Expect = 4.9 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 68 LLISGGTPLGNHAMHGQYNTHHMHARSVLFLAHNTFAVHA 187 +LIS G P A H ++TH H+ AH+T A HA Sbjct: 68 MLISAGLP-PLKASHSAHSTHSAHSTHSTHSAHSTHAGHA 106
>LIPM_NEIMB (Q05013) Capsule polysaccharide modification protein lipA| Length = 704 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 73 YFWGYSTWQPCNARPVQHSPYACKKRFISCTQHLCR 180 Y G S W+ A+P + P +C+ +FIS TQ L R Sbjct: 356 YCVGMSLWKRAVAKPFFNVP-SCRLKFISSTQKLAR 390
>LIPM_NEIMA (P57037) Capsule polysaccharide modification protein lipA| Length = 704 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 73 YFWGYSTWQPCNARPVQHSPYACKKRFISCTQHLCR 180 Y G S W+ A+P + P +C+ +FIS TQ L R Sbjct: 356 YCVGMSLWKRAVAKPFFNVP-SCRLKFISSTQKLAR 390
>TRAN_ECOLI (P24082) Protein traN precursor| Length = 602 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = -1 Query: 379 GQTYRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVLSELAGV 200 GQ+Y S Y + + R + T D + P C++ + + +++ A L E A Sbjct: 325 GQSY-SMYQSCWAYRDTYVTQSADKGTCQTYTDNPACTLVSHQCAFYSEEGACLHEYATY 383 Query: 199 TCASGMDGKGVVC 161 +C S GK +VC Sbjct: 384 SCESKTSGKVMVC 396
>HYPF2_RALEU (O07451) Carbamoyltransferase hypF2 (EC 2.1.3.-) (Carbamoyl| phosphate-converting enzyme hypF2) ([NiFe]-hydrogenase maturation factor hypF2) (Hydrogenase maturation protein hypF2) Length = 806 Score = 28.1 bits (61), Expect = 8.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 19/59 (32%) Frame = +1 Query: 151 FISCTQHLCRPCH---WRR*HQRAQIA----------------PRHRRFHG*PHSAPRC 270 FI+CTQ C P + W + RA + P HRRFH P++ P C Sbjct: 140 FINCTQ--CGPRYTLTWALPYDRATTSMAPFPQCRPCLDEYNDPEHRRFHAEPNACPDC 196
>YJHH_ECOLI (P39359) Hypothetical protein yjhH| Length = 301 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 319 MGGDATFTTSSLFAPDCSVARYGVSRGND 233 +GGD T S+ FAP+ SV Y R D Sbjct: 203 LGGDGAITASANFAPELSVGIYRAWREGD 231
>ALBU_PETMA (Q91274) Serum albumin SDS-1 precursor| Length = 1423 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%) Frame = -3 Query: 164 VQEIK----RFLHAYGECCTGRALHGCQVE 87 V E+K +F H+ ECCT H C VE Sbjct: 1190 VSEVKNFAQKFSHSVTECCTSEKTHECFVE 1219
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 28.1 bits (61), Expect = 8.3 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -2 Query: 411 TRSPTTSTVWSDRRTAPITSTIST 340 T P+TSTV + T+P+TST+++ Sbjct: 441 TTEPSTSTVTTSPSTSPVTSTVTS 464
>PHY_PINSY (Q41046) Phytochrome| Length = 1131 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 32 KVTSSKDMSLCPLLISGGTPLGNHAMHGQYNTHHMHARSVL 154 KV S+++ + PL + G TP H H QY + RS+L Sbjct: 308 KVIQSEEL-MQPLCLVGSTPSAPHGCHAQYMANMGSIRSLL 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,669,610 Number of Sequences: 219361 Number of extensions: 1287996 Number of successful extensions: 3624 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3623 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
