ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111354.1| Zea mays CL1277_1 mRNA sequence 121 2e-24
2dbj|AB021176.1| Zea mays ZmRCP2 mRNA for root cap protein 2, com... 121 2e-24
3gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 113 5e-22
4gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosom... 113 5e-22
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
6gb|AF134579.1|AF134579 Zea mays clone AGPZm1 arabinogalactan pro... 113 5e-22
7dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 5e-22
9gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
10gb|AF532975.1| Oryza sativa (indica cultivar-group) IR24 chromos... 72 2e-09
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12ref|NM_189425.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
14dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
15ref|NM_189426.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
16dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
17gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen... 44 0.36
18dbj|AB108421.1| Oryza sativa (japonica cultivar-group) transposo... 44 0.36
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
21dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
22dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.36
24ref|NM_189423.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
25gb|AC018531.9| Homo sapiens chromosome 11, clone RP11-5O5, compl... 42 1.4
26gb|AC123512.4| Homo sapiens 12 BAC RP11-24B21 (Roswell Park Canc... 42 1.4
27gb|AC093157.2| Homo sapiens chromosome 1 clone RP11-421L21, comp... 42 1.4
28dbj|AB021175.1| Zea mays ZmRCP1 mRNA for root cap protein 1, com... 42 1.4
29gb|AY321293.1| Lycopersicon esculentum glycine-rich protein TomR... 40 5.6
30gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 40 5.6
31gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
32gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
33gb|AC147030.3| Pan troglodytes BAC clone RP43-95K17 from 7, comp... 40 5.6
34gb|AC146244.3| Pan troglodytes BAC clone RP43-27M14 from 7, comp... 40 5.6
35emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.6
36gb|AC002463.1| Homo sapiens BAC clone CTA-302F4 from 7, complete... 40 5.6
37gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com... 40 5.6
38emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chr... 40 5.6
39emb|AL354736.10| Human DNA sequence from clone RP11-205B18 on ch... 40 5.6
40emb|AL132794.25|HSJ343I24 Human DNA sequence from clone RP3-343I... 40 5.6
41emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 ... 40 5.6
42gb|AC099671.2| Homo sapiens chromosome 1 clone RP11-466L22, comp... 40 5.6
43gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, com... 40 5.6
44gb|AC091919.3| Homo sapiens chromosome 5 clone RP11-24M12, compl... 40 5.6
45gb|AC073421.8| Homo sapiens BAC clone RP11-525A11 from 7, comple... 40 5.6
46gb|AC087174.4| Homo sapiens chromosome 11, clone RP11-640J11, co... 40 5.6
47gb|AC112515.4| Homo sapiens chromosome 3 clone RP11-697B5, compl... 40 5.6
48gb|AC155229.2| Mus musculus BAC clone RP24-335F18 from chromosom... 40 5.6
49gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the... 40 5.6
50emb|AL671962.5| Mouse DNA sequence from clone RP23-163A2 on chro... 40 5.6
51gb|AY026037.1| Lycopersicon esculentum glycine-rich protein LeGR... 40 5.6 
>gb|AY111354.1| Zea mays CL1277_1 mRNA sequence
          Length = 1328

 Score =  121 bits (61), Expect = 2e-24
 Identities = 130/153 (84%)
 Strand = Plus / Minus

                                                                        
Query: 258  cgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccaccc 317
            |||||||||  |||||| | |||||| |||||||| |||||| || ||   || || |||
Sbjct: 1010 cgcgccacggcgcagtcagcggcgaagaggctggacgtggtgtagttgctgtcccctccc 951

                                                                        
Query: 318  atggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtctgt 377
            |||||||||||||||||| | || |||||  |||||||||| ||||||||||||||||| 
Sbjct: 950  atggtgggcatggaggccttgacatcgaaccggttgacgtagtcggagcggtacgtctgg 891

                                             
Query: 378  ccgaccacaccgtggacgtcgtcggtgagcgcg 410
            |||||||| ||||| |||||| |||||||||||
Sbjct: 890  ccgaccacgccgtgcacgtcggcggtgagcgcg 858



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 156  ttcttgcacacaacacctttgccgtccatgccactggcgcaggtgacaccagcga 210
            ||||||||||| || |||| |||  ||||||||||||| |||||||  |||||||
Sbjct: 1124 ttcttgcacaccacgccttggccacccatgccactggcacaggtgatgccagcga 1070
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>dbj|AB021176.1| Zea mays ZmRCP2 mRNA for root cap protein 2, complete cds
          Length = 1318

 Score =  121 bits (61), Expect = 2e-24
 Identities = 130/153 (84%)
 Strand = Plus / Minus

                                                                        
Query: 258  cgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccaccc 317
            |||||||||  |||||| | |||||| |||||||| |||||| || ||   || || |||
Sbjct: 1010 cgcgccacggcgcagtcagcggcgaagaggctggacgtggtgtagttgctgtcccctccc 951

                                                                        
Query: 318  atggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtctgt 377
            |||||||||||||||||| | || |||||  |||||||||| ||||||||||||||||| 
Sbjct: 950  atggtgggcatggaggccttgacatcgaaccggttgacgtagtcggagcggtacgtctgg 891

                                             
Query: 378  ccgaccacaccgtggacgtcgtcggtgagcgcg 410
            |||||||| ||||| |||||| |||||||||||
Sbjct: 890  ccgaccacgccgtgcacgtcggcggtgagcgcg 858
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>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19
              map R1938, complete sequence
          Length = 160847

 Score =  113 bits (57), Expect = 5e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                          
Query: 256    agcgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccac 315
              |||||| ||||  |||||| | ||||||||||| |||||||| |||| ||   || || |
Sbjct: 139133 agcgcgacacggcgcagtcggcggcgaacaggccggaggtggcgaagctgtggtcgcccc 139074

                                                                          
Query: 316    ccatggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtct 375
              |||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||
Sbjct: 139073 ccagcgtgggcatggacgccctgacgtcgaacttgttgacgtagtcggagcggtacgtct 139014

                                                   
Query: 376    gtccgaccacaccgtggacgtcgtcggtgagcgcgtc 412
              | ||||| || ||||| |||||| |||||||||||||
Sbjct: 139013 gaccgacgacgccgtgcacgtcgccggtgagcgcgtc 138977
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>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0040B10 map R2918, complete sequence
          Length = 149132

 Score =  113 bits (57), Expect = 5e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                         
Query: 256   agcgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccac 315
             |||||| ||||  |||||| | ||||||||||| |||||||| |||| ||   || || |
Sbjct: 15276 agcgcgacacggcgcagtcggcggcgaacaggccggaggtggcgaagctgtggtcgcccc 15217

                                                                         
Query: 316   ccatggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtct 375
             |||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||
Sbjct: 15216 ccagcgtgggcatggacgccctgacgtcgaacttgttgacgtagtcggagcggtacgtct 15157

                                                  
Query: 376   gtccgaccacaccgtggacgtcgtcggtgagcgcgtc 412
             | ||||| || ||||| |||||| |||||||||||||
Sbjct: 15156 gaccgacgacgccgtgcacgtcgccggtgagcgcgtc 15120
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 5e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                           
Query: 256     agcgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccac 315
               |||||| ||||  |||||| | ||||||||||| |||||||| |||| ||   || || |
Sbjct: 2363134 agcgcgacacggcgcagtcggcggcgaacaggccggaggtggcgaagctgtggtcgcccc 2363075

                                                                           
Query: 316     ccatggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtct 375
               |||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||
Sbjct: 2363074 ccagcgtgggcatggacgccctgacgtcgaacttgttgacgtagtcggagcggtacgtct 2363015

                                                    
Query: 376     gtccgaccacaccgtggacgtcgtcggtgagcgcgtc 412
               | ||||| || ||||| |||||| |||||||||||||
Sbjct: 2363014 gaccgacgacgccgtgcacgtcgccggtgagcgcgtc 2362978
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>gb|AF134579.1|AF134579 Zea mays clone AGPZm1 arabinogalactan protein (agp) mRNA, partial
           cds
          Length = 825

 Score =  113 bits (57), Expect = 5e-22
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                       
Query: 258 cgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccaccc 317
           |||||||||  |||||| | |||||| |||||||| |||||| || ||   || || |||
Sbjct: 660 cgcgccacggcgcagtcagcggcgaagaggctggacgtggtgtagttgctgtcccctccc 601

                                                                       
Query: 318 atggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtctgt 377
           ||||||||||| |||||| | || |||||  |||||||||| ||||||||||||||||| 
Sbjct: 600 atggtgggcattgaggccttgacatcgaaccggttgacgtagtcggagcggtacgtctgg 541

                                            
Query: 378 ccgaccacaccgtggacgtcgtcggtgagcgcg 410
           |||||||| ||||| |||||| |||||||||||
Sbjct: 540 ccgaccacgccgtgcacgtcggcggtgagcgcg 508



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 156 ttcttgcacacaacacctttgccgtccatgccactggcgcaggtgacaccagcga 210
           ||||||||||| || |||| |||  ||||||||||||| |||||||  |||||||
Sbjct: 768 ttcttgcacaccacgccttggccacccatgccactggcacaggtgatgccagcga 714
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>dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E12, full
            insert sequence
          Length = 1747

 Score =  113 bits (57), Expect = 5e-22
 Identities = 132/157 (84%)
 Strand = Plus / Plus

                                                                        
Query: 256  agcgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccac 315
            |||||| ||||  |||||| | ||||||||||| |||||||| |||| ||   || || |
Sbjct: 927  agcgcgacacggcgcagtcggcggcgaacaggccggaggtggcgaagctgtggtcgcccc 986

                                                                        
Query: 316  ccatggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtct 375
            |||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||
Sbjct: 987  ccagcgtgggcatggacgccctgacgtcgaacttgttgacgtagtcggagcggtacgtct 1046

                                                 
Query: 376  gtccgaccacaccgtggacgtcgtcggtgagcgcgtc 412
            | ||||| || ||||| |||||| |||||||||||||
Sbjct: 1047 gaccgacgacgccgtgcacgtcgccggtgagcgcgtc 1083
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 5e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                           
Query: 256     agcgcgccacgctgcagtctggggcgaacaggctggaggtggtgaaggtggcatctccac 315
               |||||| ||||  |||||| | ||||||||||| |||||||| |||| ||   || || |
Sbjct: 2370915 agcgcgacacggcgcagtcggcggcgaacaggccggaggtggcgaagctgtggtcgcccc 2370856

                                                                           
Query: 316     ccatggtgggcatggaggccctcacgtcgaaatggttgacgtaatcggagcggtacgtct 375
               |||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||
Sbjct: 2370855 ccagcgtgggcatggacgccctgacgtcgaacttgttgacgtagtcggagcggtacgtct 2370796

                                                    
Query: 376     gtccgaccacaccgtggacgtcgtcggtgagcgcgtc 412
               | ||||| || ||||| |||||| |||||||||||||
Sbjct: 2370795 gaccgacgacgccgtgcacgtcgccggtgagcgcgtc 2370759
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>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0068N01, complete sequence
          Length = 152233

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                         
Query: 350   gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
             ||||||||| ||||||||||| ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 40597 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcggtgagcgc 40538
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>gb|AF532975.1| Oryza sativa (indica cultivar-group) IR24 chromosome 5 BAC, complete
             sequence
          Length = 86190

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                         
Query: 350   gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
             ||||||||| ||||||||||| ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 41115 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcggtgagcgc 41056
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                          
Query: 350    gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
              ||||||||| ||||||||||| ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 378950 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcggtgagcgc 378891



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 368      gtacgtctgtccgaccacaccgtggacgtcgtcggtgagcgcgt 411
                ||||||||| || | ||| || ||||||||||||||||| ||||
Sbjct: 27263370 gtacgtctggcccagcacgccatggacgtcgtcggtgagggcgt 27263327



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 126      ctcaccatatgcatgcaaga 145
                ||||||||||||||||||||
Sbjct: 24521074 ctcaccatatgcatgcaaga 24521055
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>ref|NM_189425.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 350 gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
           ||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||
Sbjct: 810 gttgacgtagtcggagcggtaggtctggccgagcacgccgtggacgtcgtcgg 758
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 350      gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
                ||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||
Sbjct: 42696781 gttgacgtagtcggagcggtaggtctggccgagcacgccgtggacgtcgtcgg 42696833



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 350      gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
                ||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||
Sbjct: 42699991 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcgg 42699939



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 350      gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
                ||||||||| ||||||||||| ||||| ||||  || || ||||| |||||||
Sbjct: 42692680 gttgacgtagtcggagcggtaggtctggccgaggacgccatggacatcgtcgg 42692732
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>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1656_A11
          Length = 148887

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 350   gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
             ||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||
Sbjct: 29546 gttgacgtagtcggagcggtaggtctggccgagcacgccgtggacgtcgtcgg 29598



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 350   gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
             ||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||
Sbjct: 32756 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcgg 32704



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 350   gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
             ||||||||| ||||||||||| ||||| ||||  || || ||||| |||||||
Sbjct: 25445 gttgacgtagtcggagcggtaggtctggccgaggacgccatggacatcgtcgg 25497
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>ref|NM_189426.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 993

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 350 gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
           ||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||
Sbjct: 852 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcgg 800
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>dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full
            insert sequence
          Length = 1352

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 350  gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
            ||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||
Sbjct: 1004 gttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcgg 952
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>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
              sequence
          Length = 187707

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 372    gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
              ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 159676 gtctggccgagcacgccatggacgtcgtcggtgagcgc 159713
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>dbj|AB108421.1| Oryza sativa (japonica cultivar-group) transposon, AnacB14, complete
            sequence
          Length = 7551

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 372  gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
            ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 5447 gtctggccgagcacgccatggacgtcgtcggtgagcgc 5410
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 372      gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
                ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 22154732 gtctggccgagcacgccatggacgtcgtcggtgagcgc 22154769
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 372      gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
                ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 28348639 gtctggccgagcacgccatggacgtcgtcggtgagcgc 28348602
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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 372   gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
             ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 61217 gtctggccgagcacgccatggacgtcgtcggtgagcgc 61180
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 372    gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
              ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 146668 gtctggccgagcacgccatggacgtcgtcggtgagcgc 146631
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 372      gtctgtccgaccacaccgtggacgtcgtcggtgagcgc 409
                ||||| |||| ||| || ||||||||||||||||||||
Sbjct: 22166795 gtctggccgagcacgccatggacgtcgtcggtgagcgc 22166832
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>ref|NM_189423.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 350 gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcgg 402
           ||||||||| ||||||||||| ||||| ||||  || || ||||| |||||||
Sbjct: 834 gttgacgtagtcggagcggtaggtctggccgaggacgccatggacatcgtcgg 782
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>gb|AC018531.9| Homo sapiens chromosome 11, clone RP11-5O5, complete sequence
          Length = 165968

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     gtttatgtcctttgcttattt 77
              |||||||||||||||||||||
Sbjct: 137364 gtttatgtcctttgcttattt 137344
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>gb|AC123512.4| Homo sapiens 12 BAC RP11-24B21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86706

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   ggaggtggtgaaggtggcatc 310
             |||||||||||||||||||||
Sbjct: 83016 ggaggtggtgaaggtggcatc 83036
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>gb|AC093157.2| Homo sapiens chromosome 1 clone RP11-421L21, complete sequence
          Length = 192589

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 47     aaagacatgagtttatgtcctttgc 71
              ||||||||||||| |||||||||||
Sbjct: 176806 aaagacatgagttcatgtcctttgc 176782
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>dbj|AB021175.1| Zea mays ZmRCP1 mRNA for root cap protein 1, complete cds
          Length = 1225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 350 gttgacgtaatcggagcggtacgtctgtccgaccacaccgtggacgtcgtcggtgag 406
           ||||||||| || | |||||| ||||| || | ||| ||||| ||||||||||||||
Sbjct: 900 gttgacgtagtccgggcggtaggtctggcccagcacgccgtgcacgtcgtcggtgag 844
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>gb|AY321293.1| Lycopersicon esculentum glycine-rich protein TomR2 (TomR2) gene,
            complete cds
          Length = 1463

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  gctggaggtggtgaaggtgg 306
            ||||||||||||||||||||
Sbjct: 1209 gctggaggtggtgaaggtgg 1228



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 gctggaggtggtgaaggtgg 306
           ||||||||||||||||||||
Sbjct: 789 gctggaggtggtgaaggtgg 808
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cgctgcagtctggggcgaac 284
             ||||||||||||||||||||
Sbjct: 61522 cgctgcagtctggggcgaac 61503
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>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017K09, complete sequence
          Length = 155525

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ctcaccatatgcatgcaaga 145
             ||||||||||||||||||||
Sbjct: 35256 ctcaccatatgcatgcaaga 35237
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 368    gtacgtctgtccgaccacaccgtggacgtcgtcggtgagcgcgt 411
              ||||||||| || | ||| || ||||||||||||||||| ||||
Sbjct: 138338 gtacgtctggcccagcacgccatggacgtcgtcggtgagggcgt 138295
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>gb|AC147030.3| Pan troglodytes BAC clone RP43-95K17 from 7, complete sequence
          Length = 166955

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 99112 atgagtttatgtcctttgct 99131
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>gb|AC146244.3| Pan troglodytes BAC clone RP43-27M14 from 7, complete sequence
          Length = 161963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 37264 atgagtttatgtcctttgct 37245
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     cgtcgtcggtgagcgcgtcc 413
               ||||||||||||||||||||
Sbjct: 3035219 cgtcgtcggtgagcgcgtcc 3035200
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>gb|AC002463.1| Homo sapiens BAC clone CTA-302F4 from 7, complete sequence
          Length = 135684

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 12514 atgagtttatgtcctttgct 12533
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>gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, complete sequence
          Length = 207293

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    taaagttacaagttccaaag 50
             ||||||||||||||||||||
Sbjct: 21793 taaagttacaagttccaaag 21812
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>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the
             3' end of the LPA gene for lipoprotein (Lp(a)) and a CpG
             island, complete sequence
          Length = 135751

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    aagacatgagtttatgtcctttgc 71
             |||||||||||| |||||||||||
Sbjct: 11085 aagacatgagttcatgtcctttgc 11062
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>emb|AL354736.10| Human DNA sequence from clone RP11-205B18 on chromosome 13 Contains the
             5' end of a novel gene (FLJ32909), complete sequence
          Length = 158460

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    atatttcttgatataaagtt 37
             ||||||||||||||||||||
Sbjct: 91816 atatttcttgatataaagtt 91835
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>emb|AL132794.25|HSJ343I24 Human DNA sequence from clone RP3-343I24 on chromosome 6q13-14.1,
             complete sequence
          Length = 114728

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    acattatatttcttgatata 32
             ||||||||||||||||||||
Sbjct: 94064 acattatatttcttgatata 94045
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>emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 on chromosome Xp11.21-11.23
             Contains  the 3' end of the PFKFB1 gene for
             6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1, and
             the TRO gene for trophinin, complete sequence
          Length = 103115

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 14433 atgagtttatgtcctttgct 14452
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>gb|AC099671.2| Homo sapiens chromosome 1 clone RP11-466L22, complete sequence
          Length = 153934

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 36290 atgagtttatgtcctttgct 36271
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>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence
          Length = 216334

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tttatgtcctttgcttattt 77
             ||||||||||||||||||||
Sbjct: 87926 tttatgtcctttgcttattt 87907
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>gb|AC091919.3| Homo sapiens chromosome 5 clone RP11-24M12, complete sequence
          Length = 166358

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 50379 atgagtttatgtcctttgct 50398
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>gb|AC073421.8| Homo sapiens BAC clone RP11-525A11 from 7, complete sequence
          Length = 98415

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    atgagtttatgtcctttgct 72
             ||||||||||||||||||||
Sbjct: 69569 atgagtttatgtcctttgct 69550
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>gb|AC087174.4| Homo sapiens chromosome 11, clone RP11-640J11, complete sequence
          Length = 187218

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     atgagtttatgtcctttgct 72
              ||||||||||||||||||||
Sbjct: 146779 atgagtttatgtcctttgct 146760
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>gb|AC112515.4| Homo sapiens chromosome 3 clone RP11-697B5, complete sequence
          Length = 179154

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    catgagtttatgtcctttgc 71
             ||||||||||||||||||||
Sbjct: 99902 catgagtttatgtcctttgc 99921
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>gb|AC155229.2| Mus musculus BAC clone RP24-335F18 from chromosome 12, complete
             sequence
          Length = 156833

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    taaagttacaagttccaaag 50
             ||||||||||||||||||||
Sbjct: 25317 taaagttacaagttccaaag 25298
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>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome
          Length = 12204

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 394  cgtcgtcggtgagcgcgtcc 413
            ||||||||||||||||||||
Sbjct: 5564 cgtcgtcggtgagcgcgtcc 5545
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>emb|AL671962.5| Mouse DNA sequence from clone RP23-163A2 on chromosome X, complete
             sequence
          Length = 199534

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tttatgtcctttgcttattt 77
             ||||||||||||||||||||
Sbjct: 81940 tttatgtcctttgcttattt 81921
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>gb|AY026037.1| Lycopersicon esculentum glycine-rich protein LeGRP1 mRNA, complete
           cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 gctggaggtggtgaaggtgg 306
           ||||||||||||||||||||
Sbjct: 875 gctggaggtggtgaaggtgg 894



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 gctggaggtggtgaaggtgg 306
           ||||||||||||||||||||
Sbjct: 455 gctggaggtggtgaaggtgg 474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,246,216
Number of Sequences: 3902068
Number of extensions: 3246216
Number of successful extensions: 74349
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73987
Number of HSP's gapped (non-prelim): 357
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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