>Y326_METJA (Q57772) Hypothetical protein MJ0326|
          Length = 436

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 44/63 (69%)
 Frame = -3

Query: 485 SVPPWAVGPSLVLVGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVY 306
           ++PP+A   +LV+VGA+MMR  K I++ D  EAIPAF+T+  +PLTFSIA G+  G   Y
Sbjct: 344 AIPPYATAAALVIVGALMMRSVKYIDFDDYTEAIPAFITLLTIPLTFSIATGLALGFITY 403

Query: 305 VAL 297
             L
Sbjct: 404 PIL 406

>YICO_ECOLI (P31440) Inner membrane protein yicO|
          Length = 470

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = -3

Query: 482 VPPWAVGPSLVLVGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVY 306
           VPP+A   +L+ VG +M      + W D  E++PAF+T  +MP TFSI  GI  G   Y
Sbjct: 380 VPPYATAGALIFVGVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSY 438

>YIEG_ECOLI (P31466) Inner membrane protein yieG|
          Length = 445

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%)
 Frame = -3

Query: 482 VPPWAVGPSLVLVGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYV 303
           VP +A   +L+ VG +M      + W D+ E++PAF+T  +MP +FSI  GI  G   Y 
Sbjct: 353 VPGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYC 412

Query: 302 AL 297
            +
Sbjct: 413 VM 414

>Y1384_MYCBO (P63394) Hypothetical ABC transporter ATP-binding protein Mb1384|
          Length = 579

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -3

Query: 470 AVGPSLV-LVGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVALH 294
           A GP LV LV  ++  +   I        +PA + +AL+P+++ +    +AG+ + +   
Sbjct: 119 ATGPELVGLVVNLVTPLTSAI-------LLPAVIALALLPISWQLGVAALAGVPLLLGAL 171

Query: 293 WYDWASLACGKVGKALDDRRNQVAAATPEVIGPAQDAV*AAVRIE 159
              WAS A  +      D+ N             Q A+ AA R+E
Sbjct: 172 ---WASAAFARRADTAADKANTALTERIIEFARTQQALRAARRVE 213

>Y1349_MYCTU (P63393) Hypothetical ABC transporter ATP-binding protein|
           Rv1349/MT1392
          Length = 579

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -3

Query: 470 AVGPSLV-LVGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVALH 294
           A GP LV LV  ++  +   I        +PA + +AL+P+++ +    +AG+ + +   
Sbjct: 119 ATGPELVGLVVNLVTPLTSAI-------LLPAVIALALLPISWQLGVAALAGVPLLLGAL 171

Query: 293 WYDWASLACGKVGKALDDRRNQVAAATPEVIGPAQDAV*AAVRIE 159
              WAS A  +      D+ N             Q A+ AA R+E
Sbjct: 172 ---WASAAFARRADTAADKANTALTERIIEFARTQQALRAARRVE 213

>ICAM5_RABIT (Q28730) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 912

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 226 TWLRRSSSAFPTLPHARLAQSYQCSAT*TPRPAMMPLAMEKVSGMSAMVTNA 381
           TWL  + +A P     R +   +CS    PRPA   ++ E       + TNA
Sbjct: 671 TWLEGAEAAGPACARGRPSPRVRCSREGAPRPARPRVSREDAGTYLCVATNA 722

>RL25_NITEU (Q82TQ5) 50S ribosomal protein L25 (General stress protein CTC)|
          Length = 198

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 467 VGPSLVLVGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLT 348
           + P + L G M+  VA EIE   + + +P F+T+ L  +T
Sbjct: 114 IAPGVKLSGGMISHVATEIEISCLPKDLPEFITVDLSGMT 153

>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687|
          Length = 1237

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 325 MMPLAMEKVSGMSAMVTNAGMASFMSPHSISLATRIIMAPTSTSDGPTAHGGTLIS 492
           ++P A+ K  G + + T            ++ A+ +++ P+ T+ GP+  GGT+IS
Sbjct: 444 LVPQALPKADGRAGLGTGG--------QKVNGASVVMVQPSKTATGPSTGGGTVIS 491

>EMBA_MYCTU (P0A560) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1094

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = -3

Query: 413 IEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVALHWYDWASLACGKVGKALDDRR 234
           + W D++  I +    ++  LT SI  G++A         WY +     G   +  D+RR
Sbjct: 632 VPWYDIQPVIASHPVTSMF-LTLSILTGLLAA--------WYHFRMDYAGHT-EVKDNRR 681

Query: 233 NQVAAATPEVI 201
           N++ A+TP ++
Sbjct: 682 NRILASTPLLV 692

>EMBA_MYCBO (P0A561) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1094

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = -3

Query: 413 IEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVALHWYDWASLACGKVGKALDDRR 234
           + W D++  I +    ++  LT SI  G++A         WY +     G   +  D+RR
Sbjct: 632 VPWYDIQPVIASHPVTSMF-LTLSILTGLLAA--------WYHFRMDYAGHT-EVKDNRR 681

Query: 233 NQVAAATPEVI 201
           N++ A+TP ++
Sbjct: 682 NRILASTPLLV 692

>LEPA_BACFR (Q64T74) GTP-binding protein lepA|
          Length = 593

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 186 VLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPV 287
           ++R S     G  +++AAV+ER+PH    E+ P+
Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPQGDESAPL 188

>LEPA_BACFN (Q5LC85) GTP-binding protein lepA|
          Length = 593

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 186 VLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPV 287
           ++R S     G  +++AAV+ER+PH    E+ P+
Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPQGDESAPL 188

>SEC16_YEAST (P48415) Multidomain vesicle coat protein|
          Length = 2195

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
 Frame = +1

Query: 178  HTASCAGPMTSGVAAATWLRRSSSAFPTLPHARLAQSYQCSAT*TPRPAMMPLA------ 339
            +T+   GP+ +G ++     RSS A P +P A+ + S Q  A   P   ++PLA      
Sbjct: 868  YTSQPVGPV-AGNSSYQSQTRSSYAVPMMPQAQTSASIQPHANIQPPTGILPLAPLRPLD 926

Query: 340  -MEKVSGMSAMVTNAGMASFMSPHSISLATRII 435
             ++  + +    +N   A+ +   ++ LA  I+
Sbjct: 927  PLQAATNLQPRASNITAANSLPLANLPLAENIL 959

>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 1/4)
          Length = 179

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 145 LARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 258
           +A  S++L++  TA+CA P  + + A     +S+SAFP
Sbjct: 1   MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFP 38

>COBD_SYNY3 (P74475) Cobalamin biosynthesis protein cobD|
          Length = 342

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 343 EKVSGMSAMVTNA-GMASFMSPHSISLATRIIMAPTSTSDGPTA 471
           EKVS + A++    G+AS  + HS++ A + ++ P    D PTA
Sbjct: 88  EKVSPVLAVIIQIIGVASCFAGHSLAQAAQSVIEPLKAGDLPTA 131

>LEPA_BACTN (Q8AA33) GTP-binding protein lepA|
          Length = 593

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 186 VLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPV 287
           ++R S     G  +++AAV+ER+PH    E  P+
Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPEGDEEAPL 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,193,268
Number of Sequences: 219361
Number of extensions: 789960
Number of successful extensions: 2724
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2722
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)