ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34a08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07 map S790A, complete sequence Length = 178523 Score = 323 bits (163), Expect = 3e-85 Identities = 244/271 (90%) Strand = Plus / Plus Query: 223 gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 282 ||||||||||| ||||| ||||||||| |||| | | ||||| | | |||| || ||| Sbjct: 99829 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 99888 Query: 283 cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcgatg 342 |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||||| Sbjct: 99889 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcgatg 99948 Query: 343 gagaaggtgagcggcatgagcgccatggtgacgaacgccgggatggcctccttcatgtcg 402 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 99949 gagaaggtgagcggcatgagcaccatggtgacgaacgccgggatggcctccttcatgtcc 100008 Query: 403 ccccactcgatctccttggccacgcgcatcatcatggcgcccaccagcaccagcgacggg 462 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 100009 gcccactcgatgtccttggccacgcgcatcatcatggcgccgacgagcaccagcgacggt 100068 Query: 463 cctacggcccacggcggcacgctcatcagca 493 || ||||||||||||||||||||| |||||| Sbjct: 100069 ccgacggcccacggcggcacgctcgtcagca 100099
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 323 bits (163), Expect = 3e-85 Identities = 244/271 (90%) Strand = Plus / Minus Query: 223 gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 282 ||||||||||| ||||| ||||||||| |||| | | ||||| | | |||| || ||| Sbjct: 13084251 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 13084192 Query: 283 cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcgatg 342 |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||||| Sbjct: 13084191 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcgatg 13084132 Query: 343 gagaaggtgagcggcatgagcgccatggtgacgaacgccgggatggcctccttcatgtcg 402 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 13084131 gagaaggtgagcggcatgagcaccatggtgacgaacgccgggatggcctccttcatgtcc 13084072 Query: 403 ccccactcgatctccttggccacgcgcatcatcatggcgcccaccagcaccagcgacggg 462 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 13084071 gcccactcgatgtccttggccacgcgcatcatcatggcgccgacgagcaccagcgacggt 13084012 Query: 463 cctacggcccacggcggcacgctcatcagca 493 || ||||||||||||||||||||| |||||| Sbjct: 13084011 ccgacggcccacggcggcacgctcgtcagca 13083981 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccatggtgacgaacgcc 381 |||||||||||||||||||| Sbjct: 11929801 gcgccatggtgacgaacgcc 11929782 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tacgtagtacgtacggttcc 73 |||||||||||||||||||| Sbjct: 10884495 tacgtagtacgtacggttcc 10884476
>dbj|AK071806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111J10, full insert sequence Length = 1925 Score = 323 bits (163), Expect = 3e-85 Identities = 244/271 (90%) Strand = Plus / Minus Query: 223 gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 282 ||||||||||| ||||| ||||||||| |||| | | ||||| | | |||| || ||| Sbjct: 1622 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 1563 Query: 283 cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcgatg 342 |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||||| Sbjct: 1562 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcgatg 1503 Query: 343 gagaaggtgagcggcatgagcgccatggtgacgaacgccgggatggcctccttcatgtcg 402 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1502 gagaaggtgagcggcatgagcaccatggtgacgaacgccgggatggcctccttcatgtcc 1443 Query: 403 ccccactcgatctccttggccacgcgcatcatcatggcgcccaccagcaccagcgacggg 462 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 1442 gcccactcgatgtccttggccacgcgcatcatcatggcgccgacgagcaccagcgacggt 1383 Query: 463 cctacggcccacggcggcacgctcatcagca 493 || ||||||||||||||||||||| |||||| Sbjct: 1382 ccgacggcccacggcggcacgctcgtcagca 1352
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 323 bits (163), Expect = 3e-85 Identities = 244/271 (90%) Strand = Plus / Minus Query: 223 gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 282 ||||||||||| ||||| ||||||||| |||| | | ||||| | | |||| || ||| Sbjct: 13164430 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 13164371 Query: 283 cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcgatg 342 |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||||| Sbjct: 13164370 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcgatg 13164311 Query: 343 gagaaggtgagcggcatgagcgccatggtgacgaacgccgggatggcctccttcatgtcg 402 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 13164310 gagaaggtgagcggcatgagcaccatggtgacgaacgccgggatggcctccttcatgtcc 13164251 Query: 403 ccccactcgatctccttggccacgcgcatcatcatggcgcccaccagcaccagcgacggg 462 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 13164250 gcccactcgatgtccttggccacgcgcatcatcatggcgccgacgagcaccagcgacggt 13164191 Query: 463 cctacggcccacggcggcacgctcatcagca 493 || ||||||||||||||||||||| |||||| Sbjct: 13164190 ccgacggcccacggcggcacgctcgtcagca 13164160 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccatggtgacgaacgcc 381 |||||||||||||||||||| Sbjct: 12008208 gcgccatggtgacgaacgcc 12008189 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tacgtagtacgtacggttcc 73 |||||||||||||||||||| Sbjct: 10963684 tacgtagtacgtacggttcc 10963665
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04, complete sequence Length = 168424 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 318 gccggcgatgatgccgttggcgatggagaaggtgagcggcatgagcgccatggtgacgaa 377 |||| |||||| ||||| |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct: 96213 gccgccgatgaggccgtaggcgatggagtaggtgagcggcatgagcgccagggtgaggaa 96272 Query: 378 cgccgggatggcctccttcatgtcgccccactcgatctccttggccacgcgcatcatcat 437 |||||| | ||||| | |||||||| |||| || | |||| || ||||||||||||| Sbjct: 96273 cgccggcacggcctgcctcatgtcggcccagtccacctccgccaccgcgcgcatcatcat 96332 Query: 438 ggcgcccaccagcaccagcgacgggcctacggcccacg 475 |||| || |||||||||| |||||| || ||||||| Sbjct: 96333 cacgccgacgagcaccagcggcgggccaactgcccacg 96370
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 318 gccggcgatgatgccgttggcgatggagaaggtgagcggcatgagcgccatggtgacgaa 377 |||| |||||| ||||| |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct: 15441192 gccgccgatgaggccgtaggcgatggagtaggtgagcggcatgagcgccagggtgaggaa 15441251 Query: 378 cgccgggatggcctccttcatgtcgccccactcgatctccttggccacgcgcatcatcat 437 |||||| | ||||| | |||||||| |||| || | |||| || ||||||||||||| Sbjct: 15441252 cgccggcacggcctgcctcatgtcggcccagtccacctccgccaccgcgcgcatcatcat 15441311 Query: 438 ggcgcccaccagcaccagcgacgggcctacggcccacg 475 |||| || |||||||||| |||||| || ||||||| Sbjct: 15441312 cacgccgacgagcaccagcggcgggccaactgcccacg 15441349 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 ttcctactactactaccagtag 91 |||||||||||||||||||||| Sbjct: 6066855 ttcctactactactaccagtag 6066876
>dbj|AK098926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013004J21, full insert sequence Length = 1313 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 318 gccggcgatgatgccgttggcgatggagaaggtgagcggcatgagcgccatggtgacgaa 377 |||| |||||| ||||| |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct: 1026 gccgccgatgaggccgtaggcgatggagtaggtgagcggcatgagcgccagggtgaggaa 967 Query: 378 cgccgggatggcctccttcatgtcgccccactcgatctccttggccacgcgcatcatcat 437 |||||| | ||||| | |||||||| |||| || | |||| || ||||||||||||| Sbjct: 966 cgccggcacggcctgcctcatgtcggcccagtccacctccgccaccgcgcgcatcatcat 907 Query: 438 ggcgcccaccagcaccagcgacgggcctacggcccacg 475 |||| || |||||||||| |||||| || ||||||| Sbjct: 906 cacgccgacgagcaccagcggcgggccaactgcccacg 869
>dbj|AK061486.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A03, full insert sequence Length = 1388 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 318 gccggcgatgatgccgttggcgatggagaaggtgagcggcatgagcgccatggtgacgaa 377 |||| |||||| ||||| |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct: 1089 gccgccgatgaggccgtaggcgatggagtaggtgagcggcatgagcgccagggtgaggaa 1030 Query: 378 cgccgggatggcctccttcatgtcgccccactcgatctccttggccacgcgcatcatcat 437 |||||| | ||||| | |||||||| |||| || | |||| || ||||||||||||| Sbjct: 1029 cgccggcacggcctgcctcatgtcggcccagtccacctccgccaccgcgcgcatcatcat 970 Query: 438 ggcgcccaccagcaccagcgacgggcctacggcccacg 475 |||| || |||||||||| |||||| || ||||||| Sbjct: 969 cacgccgacgagcaccagcggcgggccaactgcccacg 932
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 327 gatgccgttggcgatggagaaggtgagcggcatg 360 ||||||||||||||||||| |||||| ||||||| Sbjct: 948764 gatgccgttggcgatggagtaggtgaacggcatg 948731
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 330 gccgttggcgatggagaaggtgagcggcat 359 ||||||||||||||||||||| |||||||| Sbjct: 188685 gccgttggcgatggagaaggtcagcggcat 188714
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 328 atgccgttggcgatggagaaggtgagcggcatg 360 ||||||| ||||||||||||||||| ||||||| Sbjct: 4761943 atgccgtgggcgatggagaaggtgaacggcatg 4761975
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 330 gccgttggcgatggagaaggtgagcggcatg 360 |||||||||||| || ||||||||||||||| Sbjct: 274535 gccgttggcgatagaaaaggtgagcggcatg 274505
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06, complete sequence Length = 151656 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 ttcctactactactaccagtag 91 |||||||||||||||||||||| Sbjct: 14424 ttcctactactactaccagtag 14445
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23, complete sequence Length = 173764 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 ttcctactactactaccagtag 91 |||||||||||||||||||||| Sbjct: 114409 ttcctactactactaccagtag 114430
>ref|XM_362769.1| Magnaporthe grisea 70-15 hypothetical protein (MG08279.4) partial mRNA Length = 1848 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Minus Query: 330 gccgttggcgatggagaaggtgagcggcatgagcgccatggt 371 ||||| |||||||||| |||||| ||||||||||| ||||| Sbjct: 1449 gccgtcggcgatggagtaggtgaagggcatgagcgcgatggt 1408
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 327 gatgccgttggcgatggagaaggtgagcggcatg 360 |||||||||||||||||| |||||| ||||||| Sbjct: 6140784 gatgccgttggcgatggaataggtgaacggcatg 6140751 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 atcatggcgcccaccagcaccagcg 457 ||||| ||||||||||||||||||| Sbjct: 644844 atcatcgcgcccaccagcaccagcg 644868 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cgttggcgatggagaaggtg 351 |||||||||||||||||||| Sbjct: 4992181 cgttggcgatggagaaggtg 4992200
>gb|AF325217.1| Rhodopseudomonas palustris membrane-bound proton-translocating pyrophosphatase gene, complete cds Length = 2437 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 gacgcccaggccggcgatgatg 330 |||||||||||||||||||||| Sbjct: 1281 gacgcccaggccggcgatgatg 1260
>gb|AY826855.1| Heterocapsa triquetra clone HTGG1 chloroplast geranylgeranyl reductase/hydrogenase mRNA, complete cds; nuclear gene for chloroplast product Length = 1876 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 399 gtcgccccactcgatctccttggccacgcg 428 ||||||| ||||||||||||||||||||| Sbjct: 883 gtcgcccgcctcgatctccttggccacgcg 854
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Minus Query: 318 gccggcgatgatgccgttggcgatggagaaggtgagcggcat 359 ||||||| ||||||||||| ||||||| |||||| |||||| Sbjct: 7660429 gccggcgccgatgccgttggtgatggagtaggtgaacggcat 7660388
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 327 gatgccgttggcgatggagaaggtgagcggcatg 360 ||||||||||||||| ||| |||| ||||||||| Sbjct: 5084969 gatgccgttggcgatcgagtaggtcagcggcatg 5084936 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cgttggcgatggagaaggtg 351 |||||||||||||||||||| Sbjct: 3892162 cgttggcgatggagaaggtg 3892181
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 467 cggcccacggcggcacgctcat 488 |||||||||||||||||||||| Sbjct: 3020448 cggcccacggcggcacgctcat 3020427
>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete sequence Length = 36905 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 414 ctccttggccacgcgcatcatcatggcgcc 443 |||||||||||||||||||| |||| |||| Sbjct: 12706 ctccttggccacgcgcatcagcatgtcgcc 12677
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gatgccgttggcgatggagaaggtgagcggcat 359 |||||| |||||||||||| |||| |||||||| Sbjct: 908710 gatgccattggcgatggagtaggtcagcggcat 908678
>ref|XM_417831.1| PREDICTED: Gallus gallus similar to thioredoxin family Trp26 (LOC419684), mRNA Length = 726 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 ccaagcacagagcagagccac 53 ||||||||||||||||||||| Sbjct: 654 ccaagcacagagcagagccac 634
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gatgccgttggcgatggagaaggtgagcggcat 359 |||||||||||||||||| |||||| |||||| Sbjct: 5257488 gatgccgttggcgatggaataggtgaacggcat 5257456
>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence Length = 211640 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatctcatggagccttttctt 31 ||||||||||||||||||||| Sbjct: 118828 aatctcatggagccttttctt 118808
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 433 atcatggcgcccaccagcaccagcg 457 ||||||||||| ||||||||||||| Sbjct: 281413 atcatggcgccgaccagcaccagcg 281389
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 433 atcatggcgcccaccagcaccagcg 457 ||||||||||| ||||||||||||| Sbjct: 5130 atcatggcgccgaccagcaccagcg 5106 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 330 gccgttggcgatggagaaggtgagcggcatga 361 |||||||||||||||| | |||| |||||||| Sbjct: 168028 gccgttggcgatggagtacgtgaacggcatga 167997
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 atcatggcgcccaccagcaccagcg 457 ||||||||||| ||||||||||||| Sbjct: 322262 atcatggcgccgaccagcaccagcg 322286
>gb|AC011195.14| Homo sapiens chromosome 17, clone CTD-2200P10, complete sequence Length = 152574 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 agccttttctttccaagcaca 41 ||||||||||||||||||||| Sbjct: 96087 agccttttctttccaagcaca 96067
>dbj|AK031098.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930404K09 product:hypothetical protein, full insert sequence Length = 2963 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatctcatggagccttttctt 31 ||||||||||||||||||||| Sbjct: 2063 aatctcatggagccttttctt 2083
>emb|AJ417658.1|POS417658 Pleurotus ostreatus partial mRNA for hypothetical zinc finger protein (mv129 gene) Length = 356 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 agttctatcctcacagctgctcaca 181 |||||||||||||| |||||||||| Sbjct: 202 agttctatcctcactgctgctcaca 178
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 aggccggcgatgatgccgttggcga 340 |||||||||||||||||| |||||| Sbjct: 563173 aggccggcgatgatgccgctggcga 563149
>emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in linkage group 3, complete sequence Length = 121030 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 ttcctactactactaccagta 90 ||||||||||||||||||||| Sbjct: 39745 ttcctactactactaccagta 39765
>emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on chromosome 16, complete sequence Length = 188228 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatctcatggagccttttctt 31 ||||||||||||||||||||| Sbjct: 39406 aatctcatggagccttttctt 39426
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 314 ccaggccggcgatgatgccgttggcgatggag 345 |||||||| |||||| | |||||||||||||| Sbjct: 1246717 ccaggccgccgatgacggcgttggcgatggag 1246686
>gb|AF371960.1| Infectious spleen and kidney necrosis virus, complete genome Length = 111362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tccttggccacgcgcatcat 434 |||||||||||||||||||| Sbjct: 75685 tccttggccacgcgcatcat 75666
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tacgtagtacgtacggttcc 73 |||||||||||||||||||| Sbjct: 74015 tacgtagtacgtacggttcc 73996
>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046A04, complete sequence Length = 141001 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccatggtgacgaacgcc 381 |||||||||||||||||||| Sbjct: 131528 gcgccatggtgacgaacgcc 131509
>gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from South Korea, complete genome Length = 112080 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tccttggccacgcgcatcat 434 |||||||||||||||||||| Sbjct: 75209 tccttggccacgcgcatcat 75190
>gb|AC121292.9| Mus musculus chromosome 1, clone RP23-172B15, complete sequence Length = 193192 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 actactaccagtagtcctaa 97 |||||||||||||||||||| Sbjct: 151572 actactaccagtagtcctaa 151553
>ref|XM_361878.1| Magnaporthe grisea 70-15 hypothetical protein (MG10955.4) partial mRNA Length = 2718 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 caccagcaccagcgacgggc 463 |||||||||||||||||||| Sbjct: 2301 caccagcaccagcgacgggc 2320
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 ccggcgatgatgccgttggcgatg 342 ||||||| |||||||||||||||| Sbjct: 2750505 ccggcgacgatgccgttggcgatg 2750528
>ref|XM_418938.1| PREDICTED: Gallus gallus similar to tRNA selenocysteine associated protein (LOC420849), mRNA Length = 1319 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ctactactactaccagtagt 92 |||||||||||||||||||| Sbjct: 402 ctactactactaccagtagt 421
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 328 atgccgttggcgatggagaaggtgagcggcat 359 ||||||||||| |||||| |||||| |||||| Sbjct: 4967133 atgccgttggcaatggagtaggtgaacggcat 4967102
>gb|DQ118403.1| Uncultured euryarchaeote Alv-FOS1 fosmid genomic sequence Length = 40482 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atgtcacgatgctccgtgtt 121 |||||||||||||||||||| Sbjct: 12497 atgtcacgatgctccgtgtt 12478
>ref|XM_754701.1| Ustilago maydis 521 hypothetical protein (UM03647.1) partial mRNA Length = 1185 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gatgatgccgttggcgatgg 343 |||||||||||||||||||| Sbjct: 1002 gatgatgccgttggcgatgg 983
>gb|AC002432.1| Homo sapiens BAC clone CTA-317G18 from 7, complete sequence Length = 143427 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 caagaatctcatggagcctt 26 |||||||||||||||||||| Sbjct: 118105 caagaatctcatggagcctt 118086
>gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome Length = 112636 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tccttggccacgcgcatcat 434 |||||||||||||||||||| Sbjct: 75580 tccttggccacgcgcatcat 75561
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 330 gccgttggcgatggagaaggtgagcggcatga 361 |||||||||||||||| | |||| |||||||| Sbjct: 94991 gccgttggcgatggagtacgtgaacggcatga 94960
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 atggcgcccaccagcaccagcgac 459 ||||||||||||||| |||||||| Sbjct: 294882 atggcgcccaccagcgccagcgac 294859
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 330 gccgttggcgatggagaaggtgagcggcatga 361 |||||||||||||||| | |||| |||||||| Sbjct: 65765 gccgttggcgatggagtacgtgaacggcatga 65796
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 atggcgcccaccagcaccagcgac 459 ||||||||||||||| |||||||| Sbjct: 255204 atggcgcccaccagcgccagcgac 255181
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 6.7 Identities = 50/60 (83%) Strand = Plus / Minus Query: 327 gatgccgttggcgatggagaaggtgagcggcatgagcgccatggtgacgaacgccgggat 386 ||||||||||| ||| ||| |||||| |||||| | | |||||| ||||| |||||||| Sbjct: 219875 gatgccgttggtgatcgagtaggtgaacggcatcatcagcatggtcacgaaggccgggat 219816
>gb|AE012449.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 357 of 460 of the complete genome Length = 11450 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 tggtgacgaacgccgggatg 387 |||||||||||||||||||| Sbjct: 9763 tggtgacgaacgccgggatg 9782
>emb|CR406308.1| Gallus gallus finished cDNA, clone ChEST864j2 Length = 1056 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ctactactactaccagtagt 92 |||||||||||||||||||| Sbjct: 143 ctactactactaccagtagt 162
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tggtgacgaacgccgggatg 387 |||||||||||||||||||| Sbjct: 1014980 tggtgacgaacgccgggatg 1014961
>emb|BX932376.2| Gallus gallus finished cDNA, clone ChEST96n4 Length = 1293 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ctactactactaccagtagt 92 |||||||||||||||||||| Sbjct: 378 ctactactactaccagtagt 397
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 acgcccaggccggcgatgatgccg 333 ||||||||||||||||| |||||| Sbjct: 507929 acgcccaggccggcgatcatgccg 507952
>emb|BX950487.1| Gallus gallus finished cDNA, clone ChEST544l1 Length = 786 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ctactactactaccagtagt 92 |||||||||||||||||||| Sbjct: 501 ctactactactaccagtagt 520
>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus neocarzinostatin biosynthetic locus, complete sequence Length = 92294 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccatggtgacgaacgcc 381 |||||||||||||||||||| Sbjct: 66868 gcgccatggtgacgaacgcc 66849
>gb|AE004591.1| Pseudomonas aeruginosa PAO1, section 152 of 529 of the complete genome Length = 11040 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cgttggcgatggagaaggtg 351 |||||||||||||||||||| Sbjct: 3701 cgttggcgatggagaaggtg 3682
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 acgcccaggccggcgatgatgccg 333 ||||||||| |||||||||||||| Sbjct: 2314726 acgcccagggcggcgatgatgccg 2314749
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cgttggcgatggagaaggtg 351 |||||||||||||||||||| Sbjct: 1722974 cgttggcgatggagaaggtg 1722993
>gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromosome unknown, complete sequence Length = 214968 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gccttttctttccaagcaca 41 |||||||||||||||||||| Sbjct: 191214 gccttttctttccaagcaca 191195
>dbj|AP004547.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT31L24, TM0228a, complete sequence Length = 65103 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gatgatgccgttggcgatgg 343 |||||||||||||||||||| Sbjct: 38455 gatgatgccgttggcgatgg 38436
>gb|AC167020.3| Mus musculus BAC clone RP23-201I6 from chromosome 1, complete sequence Length = 209249 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 actactaccagtagtcctaa 97 |||||||||||||||||||| Sbjct: 178622 actactaccagtagtcctaa 178641
>dbj|AB059297.1| Human immunodeficiency virus type 1 env gene for envelope glycoprotein, partial cds, clone:pKNI10 Length = 1095 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 ctactactactaccagtagtccta 96 |||||||||||||||||| ||||| Sbjct: 50 ctactactactaccagtactccta 73 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,546,395 Number of Sequences: 3902068 Number of extensions: 3546395 Number of successful extensions: 81738 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79543 Number of HSP's gapped (non-prelim): 2187 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
