ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECM37_YEAST (P40458) Extracellular matrix protein 37 33 0.17
2HEX8_ADEM1 (P19722) Hexon-associated protein precursor (Protein ... 28 5.5
3SORC1_MOUSE (Q9JLC4) VPS10 domain-containing receptor SorCS1 pre... 28 5.5
4OPT5_ARATH (Q9SUA4) Oligopeptide transporter 5 (AtOPT5) 28 7.2
5DPOL_ARCFU (O29753) DNA polymerase (EC 2.7.7.7) 27 9.4

>ECM37_YEAST (P40458) Extracellular matrix protein 37|
          Length = 529

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 106 TRAYARTKNSTKCKL*NINSGPSTFRSRHFMFSCLPTS*APWGLTLCFGVSLGCC 270
           +R+Y R K +   K  +  S     R +   F    TS   WG+++  G+S GCC
Sbjct: 356 SRSYCRNKKAENSKKKSPKSNKKPKRKKQKFF----TSWFTWGISITIGISFGCC 406



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>HEX8_ADEM1 (P19722) Hexon-associated protein precursor (Protein VIII) (pVIII)|
          Length = 215

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 305 FQPRNDAFEHKPQHPSDTPKHSVSPHGAQLVG 210
           FQPR  A    P HP DT   +++ +GAQL G
Sbjct: 78  FQPRPQAIPVHPAHP-DTFDAALTSNGAQLAG 108



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>SORC1_MOUSE (Q9JLC4) VPS10 domain-containing receptor SorCS1 precursor (mSorCS)|
          Length = 1167

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 272 PQHPSDTPKHSVSPHG 225
           PQHPS TP+ +++P G
Sbjct: 40  PQHPSSTPRRTLTPRG 55



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>OPT5_ARATH (Q9SUA4) Oligopeptide transporter 5 (AtOPT5)|
          Length = 753

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 43  GYKHENLDVSSTVHRAATFPVTRAYARTKNSTKCKL*NIN 162
           GY+   L VSS V +  T P+ +  A T  +TK +L   N
Sbjct: 75  GYRSNPLTVSSVVAQIITLPLGKLMATTLPTTKLRLPGTN 114



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>DPOL_ARCFU (O29753) DNA polymerase (EC 2.7.7.7)|
          Length = 781

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -1

Query: 251 PKHSVSPHGAQLV----GRHENIKCLDLKVDGPELM 156
           P+H+ S  GA ++    G HEN+ CLD     P +M
Sbjct: 385 PEHAESYEGAFVLEPERGLHENVACLDFASMYPSIM 420


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,128,915
Number of Sequences: 219361
Number of extensions: 1046781
Number of successful extensions: 2461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2461
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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