Clone Name | rbart34a07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC182645.3| Pan troglodytes BAC clone CH251-7F19 from chromosome 10, complete sequence Length = 221731 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 206618 aaaattctaccaagtgtaaac 206638 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 80939 aaaattctaccaagtgtaaac 80919
>gb|AC124436.5| Mus musculus BAC clone RP24-252O24 from chromosome 10, complete sequence Length = 174497 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 catctgggtacaaacatgaaa 58 ||||||||||||||||||||| Sbjct: 96351 catctgggtacaaacatgaaa 96371
>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence Length = 175721 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ctggatgtctcatcaacagtc 81 ||||||||||||||||||||| Sbjct: 3780 ctggatgtctcatcaacagtc 3800
>emb|AL603703.10| Human DNA sequence from clone RP11-773D16 on chromosome 10 Contains the 3' end of novel gene, a novel gene and a novel pseudogene, complete sequence Length = 135183 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 131807 aaaattctaccaagtgtaaac 131827 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 5921 aaaattctaccaagtgtaaac 5901
>emb|AL157893.16| Human DNA sequence from clone RP11-322M19 on chromosome 10 Contains the gene for a novel protein highly similar to KIAA2020, two novel genes and a CpG island, complete sequence Length = 162286 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 128880 aaaattctaccaagtgtaaac 128900
>gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, complete sequence Length = 156583 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 38273 aaaattctaccaagtgtaaac 38253
>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence Length = 197295 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 atgttttcatgtctaccaaca 216 ||||||||||||||||||||| Sbjct: 164864 atgttttcatgtctaccaaca 164844
>emb|AL732589.4| Mouse DNA sequence from clone RP23-405I23 on chromosome 11 Contains a 3'-5' exoribonuclease CSL4 homolog pseudogene and a glutamate-ammonia ligase (glutamine synthase) (Glul) pseudogene, complete sequence Length = 134644 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaaacatctgggtacaaacat 54 ||||||||||||||||||||| Sbjct: 48343 aaaacatctgggtacaaacat 48363
>gb|AC069545.5| Homo sapiens chromosome 10 clone RP11-478B11, complete sequence Length = 196771 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 48104 aaaattctaccaagtgtaaac 48084
>gb|AC182491.2| Pan troglodytes BAC clone CH251-394K8 from chromosome 10, complete sequence Length = 168541 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 50205 aaaattctaccaagtgtaaac 50225
>dbj|AK043717.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830023H09 product:unclassifiable, full insert sequence Length = 1874 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 catctgggtacaaacatgaaa 58 ||||||||||||||||||||| Sbjct: 512 catctgggtacaaacatgaaa 532
>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence Length = 162265 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 ctggatgtctcatcaacagtc 81 ||||||||||||||||||||| Sbjct: 9697 ctggatgtctcatcaacagtc 9677
>gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, complete sequence Length = 187223 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 54061 aaaattctaccaagtgtaaac 54041
>gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, complete sequence Length = 158329 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 142954 aaaattctaccaagtgtaaac 142934
>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence Length = 207157 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 catctgggtacaaacatgaaa 58 ||||||||||||||||||||| Sbjct: 7690 catctgggtacaaacatgaaa 7670
>emb|AL132656.15|HSA119F19 Human DNA sequence from clone RP11-119F19 on chromosome 10, complete sequence Length = 153370 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 151955 aaaattctaccaagtgtaaac 151975 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aaaattctaccaagtgtaaac 148 ||||||||||||||||||||| Sbjct: 26002 aaaattctaccaagtgtaaac 25982
>gb|AF411339.1| Homo sapiens brain-derived neurotrophic factor opposite strand (BDNFOS) gene, partial sequence; and brain-derived neurotrophic factor (BDNF) gene, complete cds Length = 115886 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agtgtaaactctaaaacatc 159 |||||||||||||||||||| Sbjct: 110325 agtgtaaactctaaaacatc 110306
>gb|AC087446.13| Homo sapiens chromosome 11, clone RP11-651M4, complete sequence Length = 167865 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agtgtaaactctaaaacatc 159 |||||||||||||||||||| Sbjct: 162295 agtgtaaactctaaaacatc 162276
>emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N20 on chromosome 1p31.3-32.2 Contains the 3' end of the PRKAA2 gene for protein kinase AMP-activated alpha 2 catalytic subunit, the 3' end of a novel gene, complete sequence Length = 129618 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 aactctaaaacatcaattct 165 |||||||||||||||||||| Sbjct: 78292 aactctaaaacatcaattct 78311
>gb|AF312362.1| Schmidtia pappophoroides maturase (matK) gene, complete cds; chloroplast gene for chloroplast product Length = 1542 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctttaatgttcaccaaaac 333 |||||||||||||||||||| Sbjct: 1426 tctttaatgttcaccaaaac 1445
>gb|AF312361.1| Enneapogon scoparius maturase (matK) gene, complete cds; chloroplast gene for chloroplast product Length = 1542 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctttaatgttcaccaaaac 333 |||||||||||||||||||| Sbjct: 1426 tctttaatgttcaccaaaac 1445
>gb|AF312360.1| Enneapogon glaber maturase (matK) gene, partial cds; chloroplast gene for chloroplast product Length = 1539 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctttaatgttcaccaaaac 333 |||||||||||||||||||| Sbjct: 1426 tctttaatgttcaccaaaac 1445
>gb|AF312359.1| Cottea pappophoroides maturase (matK) gene, complete cds; chloroplast gene for chloroplast product Length = 1542 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctttaatgttcaccaaaac 333 |||||||||||||||||||| Sbjct: 1426 tctttaatgttcaccaaaac 1445
>gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, complete sequence Length = 174162 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aactctaaaacatcaattct 165 |||||||||||||||||||| Sbjct: 154376 aactctaaaacatcaattct 154357
>gb|AC022516.5| Homo sapiens chromosome 19 clone LLNLF-192G3, complete sequence Length = 43593 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cattttatgttttcatgtct 209 |||||||||||||||||||| Sbjct: 607 cattttatgttttcatgtct 588
>gb|AC008999.7| Homo sapiens chromosome 19 clone LLNLR-269B9, complete sequence Length = 39707 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cattttatgttttcatgtct 209 |||||||||||||||||||| Sbjct: 37099 cattttatgttttcatgtct 37080
>gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, complete sequence Length = 141200 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 agtgtaaactctaaaacatc 159 |||||||||||||||||||| Sbjct: 64100 agtgtaaactctaaaacatc 64119
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 aactctaaaacatcaattct 165 |||||||||||||||||||| Sbjct: 1575330 aactctaaaacatcaattct 1575349
>gb|AC011513.2|AC011513 Homo sapiens chromosome 19 clone LLNLF-112E5, complete sequence Length = 40520 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cattttatgttttcatgtct 209 |||||||||||||||||||| Sbjct: 39592 cattttatgttttcatgtct 39573 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cattttatgttttcatgtct 209 |||||||||||||||||||| Sbjct: 1330 cattttatgttttcatgtct 1311
>gb|AY585230.1| Xenopus laevis myocardin mRNA, complete cds Length = 3064 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 cttgtgctcaaaagcatcat 292 |||||||||||||||||||| Sbjct: 2339 cttgtgctcaaaagcatcat 2358
>emb|AL121594.6|CNS01DRY Human chromosome 14 DNA sequence BAC R-173D9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196023 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgttttcatgtctaccaaca 216 |||||||||||||||||||| Sbjct: 152760 tgttttcatgtctaccaaca 152779 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,807,773 Number of Sequences: 3902068 Number of extensions: 3807773 Number of successful extensions: 68109 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68046 Number of HSP's gapped (non-prelim): 63 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)