ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC182645.3| Pan troglodytes BAC clone CH251-7F19 from chromos... 42 1.2
2gb|AC124436.5| Mus musculus BAC clone RP24-252O24 from chromosom... 42 1.2
3gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, c... 42 1.2
4emb|AL603703.10| Human DNA sequence from clone RP11-773D16 on ch... 42 1.2
5emb|AL157893.16| Human DNA sequence from clone RP11-322M19 on ch... 42 1.2
6gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, com... 42 1.2
7gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, com... 42 1.2
8emb|AL732589.4| Mouse DNA sequence from clone RP23-405I23 on chr... 42 1.2
9gb|AC069545.5| Homo sapiens chromosome 10 clone RP11-478B11, com... 42 1.2
10gb|AC182491.2| Pan troglodytes BAC clone CH251-394K8 from chromo... 42 1.2
11dbj|AK043717.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 42 1.2
12gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, co... 42 1.2
13gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, co... 42 1.2
14gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, co... 42 1.2
15gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, compl... 42 1.2
16emb|AL132656.15|HSA119F19 Human DNA sequence from clone RP11-119... 42 1.2
17gb|AF411339.1| Homo sapiens brain-derived neurotrophic factor op... 40 4.8
18gb|AC087446.13| Homo sapiens chromosome 11, clone RP11-651M4, co... 40 4.8
19emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N2... 40 4.8
20gb|AF312362.1| Schmidtia pappophoroides maturase (matK) gene, co... 40 4.8
21gb|AF312361.1| Enneapogon scoparius maturase (matK) gene, comple... 40 4.8
22gb|AF312360.1| Enneapogon glaber maturase (matK) gene, partial c... 40 4.8
23gb|AF312359.1| Cottea pappophoroides maturase (matK) gene, compl... 40 4.8
24gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, comp... 40 4.8
25gb|AC022516.5| Homo sapiens chromosome 19 clone LLNLF-192G3, com... 40 4.8
26gb|AC008999.7| Homo sapiens chromosome 19 clone LLNLR-269B9, com... 40 4.8
27gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, c... 40 4.8
28dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 4.8
29gb|AC011513.2|AC011513 Homo sapiens chromosome 19 clone LLNLF-11... 40 4.8
30gb|AY585230.1| Xenopus laevis myocardin mRNA, complete cds 40 4.8
31emb|AL121594.6|CNS01DRY Human chromosome 14 DNA sequence BAC R-1... 40 4.8

>gb|AC182645.3| Pan troglodytes BAC clone CH251-7F19 from chromosome 10, complete
              sequence
          Length = 221731

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    aaaattctaccaagtgtaaac 148
              |||||||||||||||||||||
Sbjct: 206618 aaaattctaccaagtgtaaac 206638



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aaaattctaccaagtgtaaac 148
             |||||||||||||||||||||
Sbjct: 80939 aaaattctaccaagtgtaaac 80919



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>gb|AC124436.5| Mus musculus BAC clone RP24-252O24 from chromosome 10, complete
             sequence
          Length = 174497

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    catctgggtacaaacatgaaa 58
             |||||||||||||||||||||
Sbjct: 96351 catctgggtacaaacatgaaa 96371



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>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 61   ctggatgtctcatcaacagtc 81
            |||||||||||||||||||||
Sbjct: 3780 ctggatgtctcatcaacagtc 3800



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>emb|AL603703.10| Human DNA sequence from clone RP11-773D16 on chromosome 10 Contains the
              3' end of novel gene, a novel gene and a novel pseudogene,
              complete sequence
          Length = 135183

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    aaaattctaccaagtgtaaac 148
              |||||||||||||||||||||
Sbjct: 131807 aaaattctaccaagtgtaaac 131827



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 128  aaaattctaccaagtgtaaac 148
            |||||||||||||||||||||
Sbjct: 5921 aaaattctaccaagtgtaaac 5901



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>emb|AL157893.16| Human DNA sequence from clone RP11-322M19 on chromosome 10 Contains the
              gene for a novel protein highly similar to KIAA2020, two
              novel genes and a CpG island, complete sequence
          Length = 162286

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    aaaattctaccaagtgtaaac 148
              |||||||||||||||||||||
Sbjct: 128880 aaaattctaccaagtgtaaac 128900



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>gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, complete sequence
          Length = 156583

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aaaattctaccaagtgtaaac 148
             |||||||||||||||||||||
Sbjct: 38273 aaaattctaccaagtgtaaac 38253



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>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence
          Length = 197295

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 196    atgttttcatgtctaccaaca 216
              |||||||||||||||||||||
Sbjct: 164864 atgttttcatgtctaccaaca 164844



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>emb|AL732589.4| Mouse DNA sequence from clone RP23-405I23 on chromosome 11 Contains a
             3'-5' exoribonuclease CSL4 homolog pseudogene and a
             glutamate-ammonia ligase (glutamine synthase) (Glul)
             pseudogene, complete sequence
          Length = 134644

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    aaaacatctgggtacaaacat 54
             |||||||||||||||||||||
Sbjct: 48343 aaaacatctgggtacaaacat 48363



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>gb|AC069545.5| Homo sapiens chromosome 10 clone RP11-478B11, complete sequence
          Length = 196771

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aaaattctaccaagtgtaaac 148
             |||||||||||||||||||||
Sbjct: 48104 aaaattctaccaagtgtaaac 48084



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>gb|AC182491.2| Pan troglodytes BAC clone CH251-394K8 from chromosome 10, complete
             sequence
          Length = 168541

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   aaaattctaccaagtgtaaac 148
             |||||||||||||||||||||
Sbjct: 50205 aaaattctaccaagtgtaaac 50225



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>dbj|AK043717.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830023H09
           product:unclassifiable, full insert sequence
          Length = 1874

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 38  catctgggtacaaacatgaaa 58
           |||||||||||||||||||||
Sbjct: 512 catctgggtacaaacatgaaa 532



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>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence
          Length = 162265

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 61   ctggatgtctcatcaacagtc 81
            |||||||||||||||||||||
Sbjct: 9697 ctggatgtctcatcaacagtc 9677



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>gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, complete sequence
          Length = 187223

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aaaattctaccaagtgtaaac 148
             |||||||||||||||||||||
Sbjct: 54061 aaaattctaccaagtgtaaac 54041



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>gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, complete sequence
          Length = 158329

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    aaaattctaccaagtgtaaac 148
              |||||||||||||||||||||
Sbjct: 142954 aaaattctaccaagtgtaaac 142934



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>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence
          Length = 207157

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 38   catctgggtacaaacatgaaa 58
            |||||||||||||||||||||
Sbjct: 7690 catctgggtacaaacatgaaa 7670



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>emb|AL132656.15|HSA119F19 Human DNA sequence from clone RP11-119F19 on chromosome 10, complete
              sequence
          Length = 153370

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    aaaattctaccaagtgtaaac 148
              |||||||||||||||||||||
Sbjct: 151955 aaaattctaccaagtgtaaac 151975



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aaaattctaccaagtgtaaac 148
             |||||||||||||||||||||
Sbjct: 26002 aaaattctaccaagtgtaaac 25982



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>gb|AF411339.1| Homo sapiens brain-derived neurotrophic factor opposite strand (BDNFOS)
              gene, partial sequence; and brain-derived neurotrophic
              factor (BDNF) gene, complete cds
          Length = 115886

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    agtgtaaactctaaaacatc 159
              ||||||||||||||||||||
Sbjct: 110325 agtgtaaactctaaaacatc 110306



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>gb|AC087446.13| Homo sapiens chromosome 11, clone RP11-651M4, complete sequence
          Length = 167865

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    agtgtaaactctaaaacatc 159
              ||||||||||||||||||||
Sbjct: 162295 agtgtaaactctaaaacatc 162276



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>emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N20 on chromosome 1p31.3-32.2
             Contains the 3' end of the  PRKAA2 gene for protein kinase
             AMP-activated alpha 2 catalytic subunit, the 3' end of a
             novel gene, complete sequence
          Length = 129618

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   aactctaaaacatcaattct 165
             ||||||||||||||||||||
Sbjct: 78292 aactctaaaacatcaattct 78311



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>gb|AF312362.1| Schmidtia pappophoroides maturase (matK) gene, complete cds;
            chloroplast gene for chloroplast product
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctttaatgttcaccaaaac 333
            ||||||||||||||||||||
Sbjct: 1426 tctttaatgttcaccaaaac 1445



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>gb|AF312361.1| Enneapogon scoparius maturase (matK) gene, complete cds; chloroplast
            gene for chloroplast product
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctttaatgttcaccaaaac 333
            ||||||||||||||||||||
Sbjct: 1426 tctttaatgttcaccaaaac 1445



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>gb|AF312360.1| Enneapogon glaber maturase (matK) gene, partial cds; chloroplast gene
            for chloroplast product
          Length = 1539

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctttaatgttcaccaaaac 333
            ||||||||||||||||||||
Sbjct: 1426 tctttaatgttcaccaaaac 1445



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>gb|AF312359.1| Cottea pappophoroides maturase (matK) gene, complete cds; chloroplast
            gene for chloroplast product
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctttaatgttcaccaaaac 333
            ||||||||||||||||||||
Sbjct: 1426 tctttaatgttcaccaaaac 1445



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>gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, complete sequence
          Length = 174162

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    aactctaaaacatcaattct 165
              ||||||||||||||||||||
Sbjct: 154376 aactctaaaacatcaattct 154357



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>gb|AC022516.5| Homo sapiens chromosome 19 clone LLNLF-192G3, complete sequence
          Length = 43593

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 cattttatgttttcatgtct 209
           ||||||||||||||||||||
Sbjct: 607 cattttatgttttcatgtct 588



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>gb|AC008999.7| Homo sapiens chromosome 19 clone LLNLR-269B9, complete sequence
          Length = 39707

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cattttatgttttcatgtct 209
             ||||||||||||||||||||
Sbjct: 37099 cattttatgttttcatgtct 37080



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>gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, complete sequence
          Length = 141200

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   agtgtaaactctaaaacatc 159
             ||||||||||||||||||||
Sbjct: 64100 agtgtaaactctaaaacatc 64119



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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 146     aactctaaaacatcaattct 165
               ||||||||||||||||||||
Sbjct: 1575330 aactctaaaacatcaattct 1575349



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>gb|AC011513.2|AC011513 Homo sapiens chromosome 19 clone LLNLF-112E5, complete sequence
          Length = 40520

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cattttatgttttcatgtct 209
             ||||||||||||||||||||
Sbjct: 39592 cattttatgttttcatgtct 39573



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  cattttatgttttcatgtct 209
            ||||||||||||||||||||
Sbjct: 1330 cattttatgttttcatgtct 1311



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>gb|AY585230.1| Xenopus laevis myocardin mRNA, complete cds
          Length = 3064

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  cttgtgctcaaaagcatcat 292
            ||||||||||||||||||||
Sbjct: 2339 cttgtgctcaaaagcatcat 2358



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>emb|AL121594.6|CNS01DRY Human chromosome 14 DNA sequence BAC R-173D9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196023

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    tgttttcatgtctaccaaca 216
              ||||||||||||||||||||
Sbjct: 152760 tgttttcatgtctaccaaca 152779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,807,773
Number of Sequences: 3902068
Number of extensions: 3807773
Number of successful extensions: 68109
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68046
Number of HSP's gapped (non-prelim): 63
length of query: 359
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 337
effective length of database: 17,147,199,772
effective search space: 5778606323164
effective search space used: 5778606323164
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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