ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016455.1| Zea mays clone Contig288 mRNA sequence 68 2e-08
2emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide t... 68 2e-08
3emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide tr... 62 1e-06
4emb|X95864.1|TTANT2 T.turgidum ant gene (1494bp) 58 2e-05
5emb|X80023.1|TTADPATP T.turgidum mRNA for ADP/ATP carrier 58 2e-05
6ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
7ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.005
8ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.005
9emb|X95863.1|TTANT1 T.turgidum ant gene (1549bp) 50 0.005
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
11dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
12dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
13dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
14dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
15dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
16dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 50 0.005
17gb|BT016715.1| Zea mays clone Contig548 mRNA sequence 44 0.33
18emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide t... 44 0.33
19gb|AY109420.1| Zea mays CL2269_1 mRNA sequence 44 0.33
20emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 1.3
21emb|AL162378.16| Human DNA sequence from clone RP11-394C23 on ch... 40 5.2
22gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 5.2
23gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complet... 40 5.2
24dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.2 
>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence
          Length = 1550

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 87/107 (81%)
 Strand = Plus / Minus

                                                                        
Query: 284  gggcaggactgggagcaaacttctcttgttcgtcatcatttcttcccctctaggcaccgc 343
            |||| |||| |||||| |||| ||||||||||||||||||| |  || | || |||||||
Sbjct: 1305 gggctggaccgggagcgaactgctcttgttcgtcatcatttttctccatttaagcaccgc 1246

                                                           
Query: 344  ctgagccgtacttcttgccgnnnnnnnggatctggagctgatcgtag 390
            | |||||||||||||| |||       ||||||||||||| ||||||
Sbjct: 1245 cggagccgtacttctttccgaagaagaggatctggagctggtcgtag 1199
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>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP
            translocase)
          Length = 1511

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 87/107 (81%)
 Strand = Plus / Minus

                                                                        
Query: 284  gggcaggactgggagcaaacttctcttgttcgtcatcatttcttcccctctaggcaccgc 343
            |||| |||| |||||| |||| ||||||||||||||||||| |  || | || |||||||
Sbjct: 1290 gggctggaccgggagcgaactgctcttgttcgtcatcatttttctccatttaagcaccgc 1231

                                                           
Query: 344  ctgagccgtacttcttgccgnnnnnnnggatctggagctgatcgtag 390
            | |||||||||||||| |||       ||||||||||||| ||||||
Sbjct: 1230 cggagccgtacttctttccgaagaagaggatctggagctggtcgtag 1184
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>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator
          Length = 2098

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/96 (81%)
 Strand = Plus / Minus

                                                                        
Query: 295  ggagcaaacttctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtac 354
            ||||| |||| ||||||||||||||||||| |  || | || |||||||| |||||||||
Sbjct: 1947 ggagcgaactgctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtac 1888

                                                
Query: 355  ttcttgccgnnnnnnnggatctggagctgatcgtag 390
            ||||| |||       ||||||||||||| ||||||
Sbjct: 1887 ttctttccgaagaagaggatctggagctggtcgtag 1852
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>emb|X95864.1|TTANT2 T.turgidum ant gene (1494bp)
          Length = 1494

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 337  gcaccgcctgagccgtacttcttgccgnnnnnnnggatctggagctgatcgtag 390
            |||||||| ||||||||||||||||||       ||||||||||||||||||||
Sbjct: 1473 gcaccgccggagccgtacttcttgccgaagaagaggatctggagctgatcgtag 1420
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>emb|X80023.1|TTADPATP T.turgidum mRNA for ADP/ATP carrier
          Length = 1035

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 337  gcaccgcctgagccgtacttcttgccgnnnnnnnggatctggagctgatcgtag 390
            |||||||| ||||||||||||||||||       ||||||||||||||||||||
Sbjct: 1028 gcaccgccggagccgtacttcttgccgaagaagaggatctggagctgatcgtag 975
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>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1247



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1248



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1341 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1289



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506
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>emb|X95863.1|TTANT1 T.turgidum ant gene (1549bp)
          Length = 1549

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 42/50 (84%)
 Strand = Plus / Minus

                                                              
Query: 337  gcaccgcctgagccgtacttcttgccgnnnnnnnggatctggagctgatc 386
            |||||||| ||||||||||||||||||       ||||||||||||||||
Sbjct: 1528 gcaccgccggagccgtacttcttgccgaagaagaggatctggagctgatc 1479
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                     
Query: 308      cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
                ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 29843335 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 29843283



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 114      aactcaaactcaaccctatgatagtaaa 141
                |||||||||||||||||||||| |||||
Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 308   cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
             ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 99680 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 99628



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 114   aactcaaactcaaccctatgatagtaaa 141
             |||||||||||||||||||||| |||||
Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 308 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
           ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 248



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 114 aactcaaactcaaccctatgatagtaaa 141
           |||||||||||||||||||||| |||||
Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465
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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1248



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1247



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1340 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1288



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505
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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 308  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1287 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1235



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 114  aactcaaactcaaccctatgatagtaaa 141
            |||||||||||||||||||||| |||||
Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450
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>gb|BT016715.1| Zea mays clone Contig548 mRNA sequence
          Length = 1584

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 306  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||||
Sbjct: 1276 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctt 1223
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>emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide translocator (also called
            ADP/ATP translocase)
          Length = 1579

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 306  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||||
Sbjct: 1275 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctt 1222
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>gb|AY109420.1| Zea mays CL2269_1 mRNA sequence
          Length = 1883

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 306  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 359
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||||
Sbjct: 1292 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctt 1239
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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   ctggagttcgatgcctccacc 198
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504
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>emb|AL162378.16| Human DNA sequence from clone RP11-394C23 on chromosome 13q21.1-21.3,
              complete sequence
          Length = 175820

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    ggactgggagcaaacttctc 308
              ||||||||||||||||||||
Sbjct: 163890 ggactgggagcaaacttctc 163909
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    gttcgccagatcctcgaagg 285
              ||||||||||||||||||||
Sbjct: 991526 gttcgccagatcctcgaagg 991545
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>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    atgatagtaaatgttttgag 150
              ||||||||||||||||||||
Sbjct: 152272 atgatagtaaatgttttgag 152253
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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   catactcgaactcaaactcaaccc 129
             ||||||| ||||||||||||||||
Sbjct: 48909 catactcaaactcaaactcaaccc 48932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,190,047
Number of Sequences: 3902068
Number of extensions: 3190047
Number of successful extensions: 64195
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 64114
Number of HSP's gapped (non-prelim): 62
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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