ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009478.1| Triticum aestivum clone wr1.pk0035.f3:fis, full i... 291 1e-75
2gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
3gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AK099450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
6dbj|AK071336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
7dbj|AK065861.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8gb|DQ175855.1| Hordeum vulgare clone DsC26 Ds insertion site fla... 48 0.029
9gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosom... 46 0.11
10gb|AC151995.2| Mus musculus BAC clone RP23-152L21 from 16, compl... 46 0.11
11gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Ca... 42 1.8
12emb|AL022069.1|HS168L15 Human DNA sequence from clone RP1-168L15... 42 1.8
13gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Can... 42 1.8
14gb|AC153490.1| Mus musculus BAC RP23-210M12 (Roswell Park Cance... 40 7.0
15gb|L01443.1|EEVNSPEPB Venezuelan equine encephalitis virus strai... 40 7.0
16gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.0
17gb|AY741139.1| Venezuelan equine encephalitis virus strain V3526... 40 7.0
18gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chrom... 40 7.0
19gb|AC153865.3| Mus musculus BAC RP23-373P9 (Roswell Park Cancer... 40 7.0
20gb|AC113544.9| Mus musculus chromosome 10, clone RP23-227F5, com... 40 7.0
21gb|AC079760.6| Homo sapiens BAC clone RP11-142A5 from 7, complet... 40 7.0
22emb|AL450083.11| Human DNA sequence from clone RP11-514P7 on chr... 40 7.0
23gb|AC084373.24| Homo sapiens 12q BAC RP11-421H10 (Roswell Park C... 40 7.0
24gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, comp... 40 7.0
25ref|NM_214563.1| Strongylocentrotus purpuratus bone morphogeneti... 40 7.0
26gb|AC010281.4|AC010281 Homo sapiens chromosome 5 clone CTC-553B9... 40 7.0
27gb|AY190951.1| Drosophila willistoni clone DWIF01_10_N12 (D1470)... 40 7.0
28gb|L01442.2|EEVNSPEPA Venezuelan equine encephalitis virus, comp... 40 7.0
29gb|DQ322642.1| VEEV replicon vector YFV-C3opt, complete sequence 40 7.0
30gb|DQ322641.1| VEEV replicon vector YFV-C2opt-NS2mut, complete s... 40 7.0
31gb|DQ322640.1| VEEV replicon vector YFV-C3opt-NS2mut, complete s... 40 7.0
32gb|DQ322639.1| VEEV replicon vector YFV-C2opt, complete sequence 40 7.0
33gb|DQ322638.1| VEEV replicon vector YFV-C2, complete sequence 40 7.0
34gb|DQ322637.1| VEEV replicon vector YFV-C1, complete sequence 40 7.0
35gb|DQ322636.1| VEEV replicon vector YFV-C2, complete sequence 40 7.0
36gb|AC006083.1|AC006083 Homo sapiens chromosome 17, clone hRPK.1... 40 7.0
37gb|AF069903.1|AF069903 Venezuelan equine encephalitis virus stra... 40 7.0
38gb|AC171338.5| Rhesus Macaque BAC CH250-526I15 (Children's Hosp... 40 7.0
39gb|J04332.1|EEVNSPENV Venezuelan equine encephalitis virus nonst... 40 7.0
40gb|L23838.1|SUSSUBMX Strongylocentrotus purpuratus homolog of hu... 40 7.0 
>gb|BT009478.1| Triticum aestivum clone wr1.pk0035.f3:fis, full insert mRNA sequence
          Length = 1954

 Score =  291 bits (147), Expect = 1e-75
 Identities = 240/271 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  tgtttactgctcagctgatggaatataccacgcgatcagacagctccttcccaaccacct 304
            ||||| |||||||||| | |||||| || |  || |||||||||||||||||||| || |
Sbjct: 1768 tgtttgctgctcagctaagggaatagacgatacggtcagacagctccttcccaacgactt 1709

                                                                        
Query: 305  tggcgtatctgctcagctgcctttccagctcactcaggtgtttcctctggattggcccaa 364
            | ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |
Sbjct: 1708 tcgcgtatctgctcagctgcctttccagctcactcaggtgtctcctgtcgattggcccga 1649

                                                                        
Query: 365  caacgctctcaagttccttgtatttaactcgggagccgctcaggtccatgataacatttg 424
            ||||||| | |||||||||||||||||| || |||||||||||| |||||||||| ||| 
Sbjct: 1648 caacgctgtgaagttccttgtatttaacccgagagccgctcaggcccatgataacgtttt 1589

                                                                        
Query: 425  caacatctacgtccgaacagtcctcggctgcatcaccattggattctgaatgaaccatct 484
            ||||||||||||| ||||| ||||| |||| |||||| || || ||||||||||||||||
Sbjct: 1588 caacatctacgtcggaacattcctcagctgtatcacctttagactctgaatgaaccatct 1529

                                           
Query: 485  cttcatccaccatcatgtctgattcgtcata 515
            ||||||| ||||||||||||||||| |||||
Sbjct: 1528 cttcatcaaccatcatgtctgattcatcata 1498
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                   
Query: 463    ttggattctgaatgaaccatctcttcatccaccatcatgtctgattcgtcata 515
              |||||||||||  |||||||||||||||| |||||||||||||| || |||||
Sbjct: 150152 ttggattctgatcgaaccatctcttcatcaaccatcatgtctgagtcatcata 150204



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                          
Query: 264    ggaatataccacgcgatcagacagctccttcccaaccaccttggcgtatctgctcagctg 323
              |||||| |||| ||||||||| ||||||||||| || || ||  ||||| ||||||  ||
Sbjct: 149591 ggaataaaccatgcgatcagatagctccttccctacaactttcacgtatttgctcaattg 149650

                         
Query: 324    cctttccagct 334
              |||||| ||||
Sbjct: 149651 cctttctagct 149661
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>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012G21, complete sequence
          Length = 135750

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 463   ttggattctgaatgaaccatctcttcatccaccatcatgtctgattcgtcata 515
             |||||||||||  |||||||||||||||| |||||||||||||| || |||||
Sbjct: 11385 ttggattctgatcgaaccatctcttcatcaaccatcatgtctgagtcatcata 11437



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                         
Query: 264   ggaatataccacgcgatcagacagctccttcccaaccaccttggcgtatctgctcagctg 323
             |||||| |||| ||||||||| ||||||||||| || || ||  ||||| ||||||  ||
Sbjct: 10824 ggaataaaccatgcgatcagatagctccttccctacaactttcacgtatttgctcaattg 10883

                        
Query: 324   cctttccagct 334
             |||||| ||||
Sbjct: 10884 cctttctagct 10894
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 463      ttggattctgaatgaaccatctcttcatccaccatcatgtctgattcgtcata 515
                |||||||||||  |||||||||||||||| |||||||||||||| || |||||
Sbjct: 21758976 ttggattctgatcgaaccatctcttcatcaaccatcatgtctgagtcatcata 21759028



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                            
Query: 264      ggaatataccacgcgatcagacagctccttcccaaccaccttggcgtatctgctcagctg 323
                |||||| |||| ||||||||| ||||||||||| || || ||  ||||| ||||||  ||
Sbjct: 21758415 ggaataaaccatgcgatcagatagctccttccctacaactttcacgtatttgctcaattg 21758474

                           
Query: 324      cctttccagct 334
                |||||| ||||
Sbjct: 21758475 cctttctagct 21758485
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>dbj|AK099450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022G09, full
            insert sequence
          Length = 2392

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 463  ttggattctgaatgaaccatctcttcatccaccatcatgtctgattcgtcata 515
            |||||||||||  |||||||||||||||| |||||||||||||| || |||||
Sbjct: 1861 ttggattctgatcgaaccatctcttcatcaaccatcatgtctgagtcatcata 1809



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  ggaatataccacgcgatcagacagctccttcccaaccaccttggcgtatctgctcagctg 323
            |||||| |||| ||||||||| ||||||||||| || || ||  ||||| ||||||  ||
Sbjct: 2063 ggaataaaccatgcgatcagatagctccttccctacaactttcacgtatttgctcaattg 2004

                       
Query: 324  cctttccagct 334
            |||||| ||||
Sbjct: 2003 cctttctagct 1993
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>dbj|AK071336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091P10, full
            insert sequence
          Length = 2260

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 463  ttggattctgaatgaaccatctcttcatccaccatcatgtctgattcgtcata 515
            |||||||||||  |||||||||||||||| |||||||||||||| || |||||
Sbjct: 1833 ttggattctgatcgaaccatctcttcatcaaccatcatgtctgagtcatcata 1781



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  ggaatataccacgcgatcagacagctccttcccaaccaccttggcgtatctgctcagctg 323
            |||||| |||| ||||||||| ||||||||||| || || ||  ||||| ||||||  ||
Sbjct: 2035 ggaataaaccatgcgatcagatagctccttccctacaactttcacgtatttgctcaattg 1976

                       
Query: 324  cctttccagct 334
            |||||| ||||
Sbjct: 1975 cctttctagct 1965
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>dbj|AK065861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045J02, full
            insert sequence
          Length = 2265

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 463  ttggattctgaatgaaccatctcttcatccaccatcatgtctgattcgtcata 515
            |||||||||||  |||||||||||||||| |||||||||||||| || |||||
Sbjct: 1893 ttggattctgatcgaaccatctcttcatcaaccatcatgtctgagtcatcata 1841



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  ggaatataccacgcgatcagacagctccttcccaaccaccttggcgtatctgctcagctg 323
            |||||| |||| ||||||||| ||||||||||| || || ||  ||||| ||||||  ||
Sbjct: 2095 ggaataaaccatgcgatcagatagctccttccctacaactttcacgtatttgctcaattg 2036

                       
Query: 324  cctttccagct 334
            |||||| ||||
Sbjct: 2035 cctttctagct 2025
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>gb|DQ175855.1| Hordeum vulgare clone DsC26 Ds insertion site flanking region
           genomic sequence
          Length = 637

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 400 ccgctcaggtccatgataacatttgca 426
           ||||||| |||||||||||||||||||
Sbjct: 611 ccgctcangtccatgataacatttgca 637



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  agcgttcgcttcaataataacatta 25
          |||||||||||||| ||||||||||
Sbjct: 1  agcgttcgcttcaagaataacatta 25
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>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete sequence
          Length = 175409

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 10     ttcaataataacattaagaacca 32
              |||||||||||||||||||||||
Sbjct: 123597 ttcaataataacattaagaacca 123575
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>gb|AC151995.2| Mus musculus BAC clone RP23-152L21 from 16, complete sequence
          Length = 186505

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 10     ttcaataataacattaagaacca 32
              |||||||||||||||||||||||
Sbjct: 149933 ttcaataataacattaagaacca 149955
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>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188027

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 481   atctcttcatccaccatcatg 501
             |||||||||||||||||||||
Sbjct: 23167 atctcttcatccaccatcatg 23187
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>emb|AL022069.1|HS168L15 Human DNA sequence from clone RP1-168L15 on chromosome 6q26-27 Contains
              the 3' end of the RPS6KA2 gene for ribosomal protein S6
              kinase, 90kD, polypeptide 2 (RSK3), the gene for brain
              protein 44-like (BRP44l), the 5' end of the gene for a
              novel protein similar to RIKEN cDNA 5630401J11 (pRGR1)
              (MGC19825) and 5 CpG islands, complete sequence
          Length = 178098

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 474    atgaaccatctcttcatccaccatc 498
              |||||||||| ||||||||||||||
Sbjct: 141675 atgaaccatcccttcatccaccatc 141699
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>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151309

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 481   atctcttcatccaccatcatg 501
             |||||||||||||||||||||
Sbjct: 81247 atctcttcatccaccatcatg 81267
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>gb|AC153490.1| Mus musculus  BAC RP23-210M12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 145026

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   aatgaaccatctcttcatcc 492
             ||||||||||||||||||||
Sbjct: 57071 aatgaaccatctcttcatcc 57052
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>gb|L01443.1|EEVNSPEPB Venezuelan equine encephalitis virus strain TC-83, complete genome
          Length = 11446

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3371 tcgggcagttgccactggaa 3390
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     ctcaagttccttgtatttaa 391
               ||||||||||||||||||||
Sbjct: 1205018 ctcaagttccttgtatttaa 1205037
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>gb|AY741139.1| Venezuelan equine encephalitis virus strain V3526, complete genome
          Length = 11434

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3371 tcgggcagttgccactggaa 3390
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>gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chromosome 7, complete
             sequence
          Length = 159549

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     cttcaataataacattaaga 28
             ||||||||||||||||||||
Sbjct: 50753 cttcaataataacattaaga 50772
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>gb|AC153865.3| Mus musculus  BAC RP23-373P9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 180703

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 474   atgaaccatctcttcatccaccat 497
             |||||||||||||||| |||||||
Sbjct: 44957 atgaaccatctcttcagccaccat 44934
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>gb|AC113544.9| Mus musculus chromosome 10, clone RP23-227F5, complete sequence
          Length = 177145

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    aatgaaccatctcttcatcc 492
              ||||||||||||||||||||
Sbjct: 103117 aatgaaccatctcttcatcc 103098
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>gb|AC079760.6| Homo sapiens BAC clone RP11-142A5 from 7, complete sequence
          Length = 129808

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      cttcaataataacattaaga 28
              ||||||||||||||||||||
Sbjct: 103286 cttcaataataacattaaga 103267
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>emb|AL450083.11| Human DNA sequence from clone RP11-514P7 on chromosome X, complete
             sequence
          Length = 169494

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    gccactggaaccaaccaaaa 110
             ||||||||||||||||||||
Sbjct: 27280 gccactggaaccaaccaaaa 27261
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>gb|AC084373.24| Homo sapiens 12q BAC RP11-421H10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184876

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    ctctcaagttccttgtatttaact 393
              |||||||||||||||| |||||||
Sbjct: 109636 ctctcaagttccttgtttttaact 109659
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>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence
          Length = 191309

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    ccatctcttcatccaccatc 498
              ||||||||||||||||||||
Sbjct: 130793 ccatctcttcatccaccatc 130774
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>ref|NM_214563.1| Strongylocentrotus purpuratus bone morphogenetic protein 1 (BMP1),
           mRNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 tcactcaggtgtttcctctg 353
           ||||||||||||||||||||
Sbjct: 977 tcactcaggtgtttcctctg 958
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>gb|AC010281.4|AC010281 Homo sapiens chromosome 5 clone CTC-553B9, complete sequence
          Length = 160378

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    ccatctcttcatccaccatc 498
              ||||||||||||||||||||
Sbjct: 104547 ccatctcttcatccaccatc 104566
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>gb|AY190951.1| Drosophila willistoni clone DWIF01_10_N12 (D1470) genomic sequence
          Length = 35954

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 tttccagctcactcaggtgt 345
           ||||||||||||||||||||
Sbjct: 605 tttccagctcactcaggtgt 586
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>gb|L01442.2|EEVNSPEPA Venezuelan equine encephalitis virus, complete genome
          Length = 11447

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3371 tcgggcagttgccactggaa 3390
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>gb|DQ322642.1| VEEV replicon vector YFV-C3opt, complete sequence
          Length = 12840

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|DQ322641.1| VEEV replicon vector YFV-C2opt-NS2mut, complete sequence
          Length = 10928

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|DQ322640.1| VEEV replicon vector YFV-C3opt-NS2mut, complete sequence
          Length = 12840

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|DQ322639.1| VEEV replicon vector YFV-C2opt, complete sequence
          Length = 10928

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|DQ322638.1| VEEV replicon vector YFV-C2, complete sequence
          Length = 12840

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|DQ322637.1| VEEV replicon vector YFV-C1, complete sequence
          Length = 10868

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|DQ322636.1| VEEV replicon vector YFV-C2, complete sequence
          Length = 10928

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3372 tcgggcagttgccactggaa 3391
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>gb|AC006083.1|AC006083 Homo sapiens chromosome 17, clone  hRPK.1053_B_8, complete sequence
          Length = 162625

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cagttgccactggaaccaac 105
             ||||||||||||||||||||
Sbjct: 79205 cagttgccactggaaccaac 79224
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>gb|AF069903.1|AF069903 Venezuelan equine encephalitis virus strain 71-180, complete genome
          Length = 11445

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3371 tcgggcagttgccactggaa 3390
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>gb|AC171338.5| Rhesus Macaque  BAC CH250-526I15 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 165606

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   catctggtttcttacaggac 210
             ||||||||||||||||||||
Sbjct: 65769 catctggtttcttacaggac 65750
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>gb|J04332.1|EEVNSPENV Venezuelan equine encephalitis virus nonstructural and envelope
            polyproteins, complete cds
          Length = 11444

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tcgggcagttgccactggaa 100
            ||||||||||||||||||||
Sbjct: 3371 tcgggcagttgccactggaa 3390
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>gb|L23838.1|SUSSUBMX Strongylocentrotus purpuratus homolog of human bone morphogenetic
           protein 1 (submp) mRNA, complete cds
          Length = 2178

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 tcactcaggtgtttcctctg 353
           ||||||||||||||||||||
Sbjct: 977 tcactcaggtgtttcctctg 958


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,417,168
Number of Sequences: 3902068
Number of extensions: 4417168
Number of successful extensions: 81259
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81170
Number of HSP's gapped (non-prelim): 89
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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