ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 6e-19
2gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 103 6e-19
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
4dbj|AK070491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
5gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare str... 103 6e-19
6gb|AC020713.7| Homo sapiens BAC clone RP11-439B18 from 4, comple... 48 0.028
7gb|AE006451.1| Lactococcus lactis subsp. lactis IL1403 section 2... 44 0.44
8gb|AC106033.4| Homo sapiens chromosome 18, clone CTD-2025K11, co... 44 0.44
9emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, ... 44 0.44
10emb|BX323798.6| Zebrafish DNA sequence from clone CH211-225G5, c... 44 0.44
11emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in... 44 0.44
12emb|AL671873.15| Mouse DNA sequence from clone RP23-382D17 on ch... 44 0.44
13gb|AC105142.4| Homo sapiens chromosome 8, clone CTD-3240I20, com... 42 1.7
14emb|CR378678.1| Photobacterium profundum SS9 chromosome 2; segme... 42 1.7
15gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone mth2-2... 42 1.7
16dbj|AP004710.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.7
17gb|AC118596.7| Mus musculus chromosome 1, clone RP24-199M24, com... 42 1.7
18gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cance... 40 6.9
19gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases ... 40 6.9
20gb|AY335551.1| Pan troglodytes chromosome 3q pericentric inversi... 40 6.9
21gb|AC132451.3| Mus musculus BAC clone RP23-194C20 from chromosom... 40 6.9
22gb|AC004605.1|HUAC004605 Homo sapiens Chromosome 16 BAC clone CI... 40 6.9
23emb|AL607036.5| Human DNA sequence from clone RP11-110C8 on chro... 40 6.9
24emb|AL591624.6| Human DNA sequence from clone RP11-143A22 on chr... 40 6.9
25emb|AL445250.4| Human DNA sequence from clone RP11-199A24 on chr... 40 6.9
26emb|AL356672.9| Human DNA sequence from clone RP11-452D24 on chr... 40 6.9
27emb|AL138819.9| Human DNA sequence from clone RP11-366O17 on chr... 40 6.9
28emb|AL669826.10| Mouse DNA sequence from clone RP23-5N19 on chro... 40 6.9
29gb|L23077.1|RATZFP15A Rattus sp. zinc-finger protein mRNA, compl... 40 6.9
30gb|AC117463.5| Homo sapiens 3 BAC RP11-452B4 (Roswell Park Cance... 40 6.9
31dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 6.9
32gb|AC182430.2| Pan troglodytes BAC clone CH251-398I16 from chrom... 40 6.9
33gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 6.9
34gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cance... 40 6.9
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
36gb|AC108021.3| Homo sapiens BAC clone RP11-8N8 from 4, complete ... 40 6.9
37gb|AC016759.11| Homo sapiens BAC clone RP11-535J8 from 2, comple... 40 6.9
38ref|NM_001008879.1| Rattus norvegicus zinc finger protein 292 (Z... 40 6.9
39gb|AC138627.1| Homo sapiens chromosome 16 clone RP11-42H13, comp... 40 6.9
40gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13 40 6.9
41emb|BX119315.5| Zebrafish DNA sequence from clone CH211-215F22 i... 40 6.9
42dbj|AP006451.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
43emb|AJ338759.1|HSA338759 Homo sapiens genomic sequence surroundi... 40 6.9
44emb|BX005039.11| Mouse DNA sequence from clone RP23-391M18 on ch... 40 6.9
45gb|AC102383.7| Mus musculus chromosome 1, clone RP24-312K8, comp... 40 6.9
46gb|AC102405.8| Mus musculus chromosome 3, clone RP24-318I21, com... 40 6.9
47gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, comple... 40 6.9
48emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 6.9
49emb|AL669895.9| Mouse DNA sequence from clone RP23-31N7 on chrom... 40 6.9
50gb|AC161768.25| Mus musculus 6 BAC RP23-37C14 (Roswell Park Canc... 40 6.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 6e-19
 Identities = 108/127 (85%), Gaps = 6/127 (4%)
 Strand = Plus / Plus

                                                                            
Query: 354      actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 413
                ||||||||||| | ||||  ||||||||||||||      |||||| |||||||| ||||
Sbjct: 13173830 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 13173883

                                                                            
Query: 414      aaggccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 473
                ||||||||||||| ||||||||||||||||| || ||||| |||  |||||||||| |||
Sbjct: 13173884 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 13173943

                       
Query: 474      tacttga 480
                |||||||
Sbjct: 13173944 tacttga 13173950
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score =  103 bits (52), Expect = 6e-19
 Identities = 108/127 (85%), Gaps = 6/127 (4%)
 Strand = Plus / Minus

                                                                         
Query: 354   actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 413
             ||||||||||| | ||||  ||||||||||||||      |||||| |||||||| ||||
Sbjct: 52808 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 52755

                                                                         
Query: 414   aaggccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 473
             ||||||||||||| ||||||||||||||||| || ||||| |||  |||||||||| |||
Sbjct: 52754 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 52695

                    
Query: 474   tacttga 480
             |||||||
Sbjct: 52694 tacttga 52688
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 6e-19
 Identities = 108/127 (85%), Gaps = 6/127 (4%)
 Strand = Plus / Plus

                                                                            
Query: 354      actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 413
                ||||||||||| | ||||  ||||||||||||||      |||||| |||||||| ||||
Sbjct: 13170605 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 13170658

                                                                            
Query: 414      aaggccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 473
                ||||||||||||| ||||||||||||||||| || ||||| |||  |||||||||| |||
Sbjct: 13170659 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 13170718

                       
Query: 474      tacttga 480
                |||||||
Sbjct: 13170719 tacttga 13170725
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>dbj|AK070491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J20, full
            insert sequence
          Length = 1231

 Score =  103 bits (52), Expect = 6e-19
 Identities = 108/127 (85%), Gaps = 6/127 (4%)
 Strand = Plus / Minus

                                                                        
Query: 354  actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 413
            ||||||||||| | ||||  ||||||||||||||      |||||| |||||||| ||||
Sbjct: 1075 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 1022

                                                                        
Query: 414  aaggccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 473
            ||||||||||||| ||||||||||||||||| || ||||| |||  |||||||||| |||
Sbjct: 1021 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 962

                   
Query: 474  tacttga 480
            |||||||
Sbjct: 961  tacttga 955
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>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07,
              from chromosome 3, complete sequence
          Length = 149539

 Score =  103 bits (52), Expect = 6e-19
 Identities = 108/127 (85%), Gaps = 6/127 (4%)
 Strand = Plus / Minus

                                                                          
Query: 354    actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 413
              ||||||||||| | ||||  ||||||||||||||      |||||| |||||||| ||||
Sbjct: 146011 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 145958

                                                                          
Query: 414    aaggccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 473
              ||||||||||||| ||||||||||||||||| || ||||| |||  |||||||||| |||
Sbjct: 145957 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 145898

                     
Query: 474    tacttga 480
              |||||||
Sbjct: 145897 tacttga 145891
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>gb|AC020713.7| Homo sapiens BAC clone RP11-439B18 from 4, complete sequence
          Length = 187350

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 180    atgtaaaagcaaacaaaatctact 203
              ||||||||||||||||||||||||
Sbjct: 145633 atgtaaaagcaaacaaaatctact 145656
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>gb|AE006451.1| Lactococcus lactis subsp. lactis IL1403 section 213 of 218 of the
             complete genome
          Length = 11070

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 471   tgctacttgagctgcttgaatt 492
             ||||||||||||||||||||||
Sbjct: 10104 tgctacttgagctgcttgaatt 10125
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>gb|AC106033.4| Homo sapiens chromosome 18, clone CTD-2025K11, complete sequence
          Length = 95930

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 194   aaaatctactgctatgaatttt 215
             ||||||||||||||||||||||
Sbjct: 34210 aaaatctactgctatgaatttt 34189
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>emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, complete sequence
          Length = 194853

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 109    caaccacaaaataaccaatacaacacaaaataaa 142
              ||||||||| |||| ||||||| |||||||||||
Sbjct: 162619 caaccacaatataaacaatacagcacaaaataaa 162586
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>emb|BX323798.6| Zebrafish DNA sequence from clone CH211-225G5, complete sequence
          Length = 81343

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 109   caaccacaaaataaccaatacaacac 134
             |||||||||||||||||||| |||||
Sbjct: 22986 caaccacaaaataaccaataaaacac 23011
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>emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in linkage group 2,
             complete sequence
          Length = 184244

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 109   caaccacaaaataaccaatacaacacaaaataaa 142
             ||||||||| |||| ||||||| |||||||||||
Sbjct: 75625 caaccacaatataaacaatacagcacaaaataaa 75658
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>emb|AL671873.15| Mouse DNA sequence from clone RP23-382D17 on chromosome X, complete
             sequence
          Length = 213223

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 118   aataaccaatacaacacaaaataaac 143
             |||||||||| |||||||||||||||
Sbjct: 70742 aataaccaattcaacacaaaataaac 70717
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>gb|AC105142.4| Homo sapiens chromosome 8, clone CTD-3240I20, complete sequence
          Length = 112106

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 184   aaaagcaaacaaaatctactgctat 208
             ||||||||||||||| |||||||||
Sbjct: 98496 aaaagcaaacaaaatttactgctat 98520
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>emb|CR378678.1| Photobacterium profundum SS9 chromosome 2; segment 4/7
          Length = 349527

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    aagccatacattacatattga 291
              |||||||||||||||||||||
Sbjct: 238516 aagccatacattacatattga 238536
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>gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone mth2-28b24, complete
             sequence
          Length = 112486

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 167   tttatattgacttatgtaaaagcaa 191
             |||||||||||||||||| ||||||
Sbjct: 64427 tttatattgacttatgtagaagcaa 64451
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>dbj|AP004710.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1429D6, complete
             sequence
          Length = 179115

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 184   aaaagcaaacaaaatctactgctat 208
             ||||||||||||||| |||||||||
Sbjct: 50461 aaaagcaaacaaaatttactgctat 50437
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>gb|AC118596.7| Mus musculus chromosome 1, clone RP24-199M24, complete sequence
          Length = 149611

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   tttatattgacttatgtaaaa 187
             |||||||||||||||||||||
Sbjct: 49194 tttatattgacttatgtaaaa 49214
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>gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217854

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    tctagcaacaaatgcacaaa 85
             ||||||||||||||||||||
Sbjct: 78866 tctagcaacaaatgcacaaa 78847
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>gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases 1 to 250611 (section 1 of 3) of
              the complete sequence
          Length = 250611

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     tctagcaacaaatgcacaaa 85
              ||||||||||||||||||||
Sbjct: 141664 tctagcaacaaatgcacaaa 141645
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>gb|AY335551.1| Pan troglodytes chromosome 3q pericentric inversion breakpoint
            region, complete sequence
          Length = 4289

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 250  ccattttgtggccactataacaag 273
            ||||| ||||||||||||||||||
Sbjct: 2770 ccattctgtggccactataacaag 2793
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>gb|AC132451.3| Mus musculus BAC clone RP23-194C20 from chromosome 8, complete sequence
          Length = 188539

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ccatacattacatattgatt 293
             ||||||||||||||||||||
Sbjct: 53562 ccatacattacatattgatt 53581
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>gb|AC004605.1|HUAC004605 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-248F7, complete sequence
          Length = 259474

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tatgtaaaagcaaacaaaat 198
              ||||||||||||||||||||
Sbjct: 146233 tatgtaaaagcaaacaaaat 146214
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>emb|AL607036.5| Human DNA sequence from clone RP11-110C8 on chromosome 6, complete
             sequence
          Length = 54203

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   taaaagcaaacaaaatctac 202
             ||||||||||||||||||||
Sbjct: 48042 taaaagcaaacaaaatctac 48023
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>emb|AL591624.6| Human DNA sequence from clone RP11-143A22 on chromosome 6 Contains a
             novel gene and a CpG island, complete sequence
          Length = 146887

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   taaaagcaaacaaaatctac 202
             ||||||||||||||||||||
Sbjct: 82860 taaaagcaaacaaaatctac 82841
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>emb|AL445250.4| Human DNA sequence from clone RP11-199A24 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 178384

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    taaaagcaaacaaaatctac 202
              ||||||||||||||||||||
Sbjct: 132044 taaaagcaaacaaaatctac 132063
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>emb|AL356672.9| Human DNA sequence from clone RP11-452D24 on chromosome 6, complete
             sequence
          Length = 166517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   taaaagcaaacaaaatctac 202
             ||||||||||||||||||||
Sbjct: 23167 taaaagcaaacaaaatctac 23148
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>emb|AL138819.9| Human DNA sequence from clone RP11-366O17 on chromosome 13 Contains
             part of a novel gene and part of a gene similar to MEST
             (mesoderm specific transcript (mouse) homolog), complete
             sequence
          Length = 86254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   cattgtgaactccaaccagg 365
             ||||||||||||||||||||
Sbjct: 83472 cattgtgaactccaaccagg 83453
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>emb|AL669826.10| Mouse DNA sequence from clone RP23-5N19 on chromosome 11 Contains a
             novel gene and a CpG island, complete sequence
          Length = 154338

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   gtaaaagcaaacaaaatcta 201
             ||||||||||||||||||||
Sbjct: 87211 gtaaaagcaaacaaaatcta 87230
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>gb|L23077.1|RATZFP15A Rattus sp. zinc-finger protein mRNA, complete cds
          Length = 6654

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   atttcctcaggtgtcatttc 30
            ||||||||||||||||||||
Sbjct: 4989 atttcctcaggtgtcatttc 4970
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>gb|AC117463.5| Homo sapiens 3 BAC RP11-452B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78261

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   aataaacccggcctctcagc 156
             ||||||||||||||||||||
Sbjct: 57713 aataaacccggcctctcagc 57732
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       ctcaggggtcatttcctcag 20
               ||||||||||||||||||||
Sbjct: 3359058 ctcaggggtcatttcctcag 3359077
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>gb|AC182430.2| Pan troglodytes BAC clone CH251-398I16 from chromosome 4, complete
             sequence
          Length = 145600

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 250   ccattttgtggccactataacaag 273
             ||||| ||||||||||||||||||
Sbjct: 77253 ccattctgtggccactataacaag 77276
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    tgacttatgtaaaagcaaac 193
              ||||||||||||||||||||
Sbjct: 515158 tgacttatgtaaaagcaaac 515139
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>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197909

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 1      ctcaggggtcatttcctcaggtgtcatt 28
              ||||||||||||| ||||||| ||||||
Sbjct: 183549 ctcaggggtcattacctcaggggtcatt 183576
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 210     aattttagcaagatagatgaatat 233
               |||||| |||||||||||||||||
Sbjct: 1530395 aattttggcaagatagatgaatat 1530418
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>gb|AC108021.3| Homo sapiens BAC clone RP11-8N8 from 4, complete sequence
          Length = 185972

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    ccattttgtggccactataacaag 273
              ||||| ||||||||||||||||||
Sbjct: 146020 ccattctgtggccactataacaag 146043
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>gb|AC016759.11| Homo sapiens BAC clone RP11-535J8 from 2, complete sequence
          Length = 219574

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    cagccccccaaaagtttata 172
              ||||||||||||||||||||
Sbjct: 100040 cagccccccaaaagtttata 100059
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>ref|NM_001008879.1| Rattus norvegicus zinc finger protein 292 (Znf292), mRNA
          Length = 6654

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   atttcctcaggtgtcatttc 30
            ||||||||||||||||||||
Sbjct: 4989 atttcctcaggtgtcatttc 4970
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>gb|AC138627.1| Homo sapiens chromosome 16 clone RP11-42H13, complete sequence
          Length = 170920

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tatgtaaaagcaaacaaaat 198
             ||||||||||||||||||||
Sbjct: 84555 tatgtaaaagcaaacaaaat 84536
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>gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13
          Length = 100592

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 483   tgcttgaattgtcattttggttag 506
             |||||||| |||||||||||||||
Sbjct: 96550 tgcttgaaatgtcattttggttag 96573
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>emb|BX119315.5| Zebrafish DNA sequence from clone CH211-215F22 in linkage group 9,
              complete sequence
          Length = 210930

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    taaaatagcattgtgaactc 357
              ||||||||||||||||||||
Sbjct: 186550 taaaatagcattgtgaactc 186569
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>dbj|AP006451.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1249D05
          Length = 132526

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 210    aattttagcaagatagatgaatat 233
              |||||| |||||||||||||||||
Sbjct: 115984 aattttggcaagatagatgaatat 116007
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>emb|AJ338759.1|HSA338759 Homo sapiens genomic sequence surrounding NotI site, clone NB1-077C
          Length = 925

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 424 gaaagagaacggattccttcttct 447
           ||||||||| ||||||||||||||
Sbjct: 213 gaaagagaagggattccttcttct 236
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>emb|BX005039.11| Mouse DNA sequence from clone RP23-391M18 on chromosome 2, complete
             sequence
          Length = 145263

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   cactgctacttgagctgctt 487
             ||||||||||||||||||||
Sbjct: 66070 cactgctacttgagctgctt 66051
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>gb|AC102383.7| Mus musculus chromosome 1, clone RP24-312K8, complete sequence
          Length = 142805

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   caatacaacacaaaataaac 143
             ||||||||||||||||||||
Sbjct: 40905 caatacaacacaaaataaac 40886
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>gb|AC102405.8| Mus musculus chromosome 3, clone RP24-318I21, complete sequence
          Length = 181425

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ttatgtaaaagcaaacaaaa 197
              ||||||||||||||||||||
Sbjct: 111789 ttatgtaaaagcaaacaaaa 111770
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>gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, complete sequence
          Length = 187465

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 1     ctcaggggtcatttcctcaggtgtcatt 28
             ||||||||||||| ||||||| ||||||
Sbjct: 85575 ctcaggggtcattacctcaggggtcatt 85548
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     tgtaaaagcaaacaaaatct 200
               ||||||||||||||||||||
Sbjct: 2219165 tgtaaaagcaaacaaaatct 2219146
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>emb|AL669895.9| Mouse DNA sequence from clone RP23-31N7 on chromosome X, complete
              sequence
          Length = 197638

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    gtaaaagcaaacaaaatcta 201
              ||||||||||||||||||||
Sbjct: 156866 gtaaaagcaaacaaaatcta 156847
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>gb|AC161768.25| Mus musculus 6 BAC RP23-37C14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196068

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     tctagcaacaaatgcacaaa 85
              ||||||||||||||||||||
Sbjct: 175715 tctagcaacaaatgcacaaa 175696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,692,358
Number of Sequences: 3902068
Number of extensions: 5692358
Number of successful extensions: 118577
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118237
Number of HSP's gapped (non-prelim): 340
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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