ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33h04 |
|---|---|
| Clone Library Name | barley_pub |
>TOC34_ARATH (Q38906) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa| chloroplast outer envelope protein) (GTP-binding protein OEP34) (AtToc34) Length = 313 Score = 71.2 bits (173), Expect = 2e-12 Identities = 33/60 (55%), Positives = 43/60 (71%) Frame = -1 Query: 511 NGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFVVKGIRRAIHSDISNGKLDDWEQR 332 NG+++IHVD+KL++GPNPN R KK IPL+ A QY V+K + RAI SD+S WE R Sbjct: 245 NGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKLAWELR 304
>TOC34_PEA (Q41009) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa| chloroplast outer envelope protein) (GTP-binding protein OEP34) (GTP-binding protein IAP34) Length = 310 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/60 (53%), Positives = 37/60 (61%) Frame = -1 Query: 511 NGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFVVKGIRRAIHSDISNGKLDDWEQR 332 N S SI VD+ LIDGPNPN R K +IPLI A+QY F+ K I I DI+ WE R Sbjct: 245 NKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKPAWETR 304
>QUEA_AZOSE (Q5P721) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 345 Score = 30.8 bits (68), Expect = 2.3 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +1 Query: 136 VVPESSIDSPKQTTGIRSNKRTAQEVEWTTIKRL-ACTLIGPLRP*GCGMTKLFGLPGYR 312 V+P+ ++ + T R+ R V T+++ L GPL G G T+LF LPGYR Sbjct: 229 VIPQETVAAIAAT---RAAGRRVIAVGTTSLRALEGAAQDGPLEA-GTGETELFILPGYR 284 Query: 313 FQ 318 FQ Sbjct: 285 FQ 286
>UVRA_CHLPN (Q9Z985) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1826 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -2 Query: 204 CCSFVAPNSSGLFRGIYRALRDNLN 130 CCSF SS L+ IY+AL D LN Sbjct: 297 CCSFAGNCSSYLYHTIYQALADALN 321
>RL4_BIFLO (Q8G416) 50S ribosomal protein L4| Length = 218 Score = 30.0 bits (66), Expect = 3.9 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Frame = -2 Query: 369 TFRTGSWMTGSSVIEIWLEAVTR*TKKFRHPATLR---PERANESACESLDRG---PFNF 208 + R W G +V ++ T K A LR +RAN ++ G P Sbjct: 84 SIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYALSDRANAGRVAVVEFGITEPSTK 143 Query: 207 LCCSFVAPNSSGLFRGIYRALRDNLNKVASVLGVKIMYPISLRSRNFANVIVVNYI 40 + +AP ++ F + RDN+N+ SV + ++PI + N +VI Y+ Sbjct: 144 AAVAALAPITADKFTTVVFT-RDNINEWLSVRNIPTVHPIFVDQLNTYDVITSQYV 198
>MYO1C_MOUSE (Q9WTI7) Myosin Ic (Myosin I beta) (MMIb)| Length = 1028 Score = 30.0 bits (66), Expect = 3.9 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%) Frame = -2 Query: 282 HPATLRPERANESACESLDRGPFNFL---------CCSFVAPNSSGLFRGIYRALRDNLN 130 HP L + A++ +SLDRG F L F+ N+ LFR + + ++N Sbjct: 485 HPHFLTHKLADQKTRKSLDRGEFRLLHYAGEVTYSVTGFLDKNNDLLFRNLKETMCSSMN 544 Query: 129 KVASVLGVKIMYPISLRSRNFANVIVVNYIQLFEFI 22 + + K R A ++ +QL E + Sbjct: 545 PIMAQCFDKSELSDKKRPETVATQFKMSLLQLVEIL 580
>ENK17_HUMAN (P61570) HERV-K_11q22.1 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 661 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S SIH+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 446 SPSIHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATGAVAGV--ALHSSVQSVNFV 501 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW++ L S + +DQK+++ N Sbjct: 502 NDWQKNSTRLWNSQSSIDQKLANQIN 527
>ENK12_HUMAN (P61567) HERV-K_1q22 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K102 envelope protein) (HERV-K(III) envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 588 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S S+H+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 335 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 390 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW++ L S + +DQK+++ N Sbjct: 391 NDWQKNSTRLWNSQSSIDQKLANQIN 416
>ENK11_HUMAN (P61566) HERV-K_22q11.21 provirus ancestral Env polyprotein| (Envelope polyprotein) (HERV-K101 envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 588 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S S+H+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 335 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATGAVAGV--ALHSSVQSVNFV 390 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW++ L S + +DQK+++ N Sbjct: 391 NDWQKNSTRLWNSQSSIDQKLANQIN 416
>ENK2_HUMAN (Q69384) HERV-K_7p22.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K(HML-2.HOM) envelope protein) (HERV-K108 envelope protein) (HERV-K(C7) envelope protein) (EnvK2 protein) [Contains: Surface protein (SU); Transme Length = 699 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S S+H+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 446 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 501 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW++ L S + +DQK+++ N Sbjct: 502 NDWQKNSTRLWNSQSSIDQKLANQIN 527
>YROS_RHIET (Q52742) Hypothetical sufE-like protein in rosR 3'region| Length = 151 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 352 LDDWEQRYRDLVGSGNPVDQKVSSSRNPK 266 LDDWE RYR ++ G + + R P+ Sbjct: 22 LDDWEDRYRYVIELGKALPELAEEKRTPE 50
>POK12_HUMAN (P63135) HERV-K_1q22 provirus ancestral Pol protein (HERV-K102 Pol| protein) (HERV-K(III) Pol protein) [Includes: Reverse transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4) (RNase H); Integrase (IN)] Length = 1459 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S S+H+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 1206 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 1261 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW++ L S + +DQK+++ N Sbjct: 1262 NDWQKNSTRLWNSQSSIDQKLANQIN 1287
>ENK10_HUMAN (P10267) HERV-K_5q33.3 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K10 envelope protein) (HERV-K107 envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 587 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S S+H+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 334 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 389 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW++ L S + +DQK+++ N Sbjct: 390 NDWQKNSTRLWNSQSSIDQKLANQIN 415
>ENK5_HUMAN (Q902F9) HERV-K_19p13.11 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (HERV-K113 envelope protein) (EnvK5 protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 699 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Frame = -1 Query: 505 SRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 350 S S+H+ +++ G NR K++I ++AV + V G+ A+HS + + + Sbjct: 446 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 501 Query: 349 DDWEQRYRDLVGSGNPVDQKVSSSRN 272 +DW+ L S + +DQK+++ N Sbjct: 502 NDWQNNSTRLWNSQSSIDQKLANQIN 527
>HMDH1_GOSHI (O64966) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) Length = 585 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 240 MHSHWPAQALGLRDDETFWSTGLPLP 317 + SH PA+ + L DD T S LPLP Sbjct: 12 IRSHKPARPIALEDDSTKASDALPLP 37
>LAML3_XENLA (P10999) Lamin-L(III) (Lamin-B3)| Length = 583 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +2 Query: 176 LELGATKEQHRKLNGPRSRDSHALSLARSGLR 271 +ELG +E++R+L S+ + LSLA++ LR Sbjct: 103 VELGKVREEYRQLQARNSKKENDLSLAQNQLR 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,725,032 Number of Sequences: 219361 Number of extensions: 1488621 Number of successful extensions: 3993 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3915 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3993 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
