Clone Name | rbart33h04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK099032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A13, full insert sequence Length = 1321 Score = 190 bits (96), Expect = 3e-45 Identities = 219/260 (84%) Strand = Plus / Minus Query: 258 gctcaggccttagggttgcgggatgacgaaactttttggtctaccgggttaccgcttcca 317 ||||| ||||| |||||| |||||| ||| |||| ||||||||||||| ||||||| Sbjct: 1115 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 1056 Query: 318 accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatga 377 |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||| |||| Sbjct: 1055 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtcagcatga 996 Query: 378 atcgccctcctgattccttttaccacaaaaaagtactgcacagcaaggatgagaggtatg 437 || ||||| | ||| |||||||| || |||||||||| ||| ||||||||| |||||| Sbjct: 995 atggcccttcggatgccttttacaaccaaaaagtactccaccataaggatgagcggtatg 936 Query: 438 tacttcttccagcgattgttcggatttggaccgtcgattaacttctgatcaacatgaatg 497 || |||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||| Sbjct: 935 aacatcttccagcgattgttgggatttggaccatctattagcttttgatcaacatgaatg 876 Query: 498 gacctgcttccatttgagac 517 || |||| || |||||||| Sbjct: 875 gatttgctcccgtttgagac 856
>dbj|AK058676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H08, full insert sequence Length = 1406 Score = 190 bits (96), Expect = 3e-45 Identities = 219/260 (84%) Strand = Plus / Minus Query: 258 gctcaggccttagggttgcgggatgacgaaactttttggtctaccgggttaccgcttcca 317 ||||| ||||| |||||| |||||| ||| |||| ||||||||||||| ||||||| Sbjct: 1192 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 1133 Query: 318 accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatga 377 |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||| |||| Sbjct: 1132 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtcagcatga 1073 Query: 378 atcgccctcctgattccttttaccacaaaaaagtactgcacagcaaggatgagaggtatg 437 || ||||| | ||| |||||||| || |||||||||| ||| ||||||||| |||||| Sbjct: 1072 atggcccttcggatgccttttacaaccaaaaagtactccaccataaggatgagcggtatg 1013 Query: 438 tacttcttccagcgattgttcggatttggaccgtcgattaacttctgatcaacatgaatg 497 || |||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||| Sbjct: 1012 aacatcttccagcgattgttgggatttggaccatctattagcttttgatcaacatgaatg 953 Query: 498 gacctgcttccatttgagac 517 || |||| || |||||||| Sbjct: 952 gatttgctcccgtttgagac 933
>emb|AJ245968.2|ZMA245968 Zea mays mRNA for Toc34-1 protein (toc34A gene) Length = 1233 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 330 taacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatgaatcgccctcctg 389 |||||||||||||||||||||| |||||| || | || || | ||| |||||||||| | Sbjct: 997 taacgctgctcccagtcatccaccttcccatttgcgatatctgcatggatcgccctccgg 938 Query: 390 attccttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtacttcttccag 449 ||||||||||| || || ||||||| ||||||||| || | |||||| || |||||||| Sbjct: 937 attccttttactaccaagaagtactccacagcaagtataattggtatgaacatcttccag 878 Query: 450 cgattgttcggatttggaccgtcgattaacttctgatcaacatgaatggacctgcttcca 509 |||||||| || |||||||| || ||||||||||||||||||||||||| | |||| || Sbjct: 877 cgattgttagggtttggaccatcaattaacttctgatcaacatgaatgggcttgctcccg 818 Query: 510 tttgaga 516 ||||||| Sbjct: 817 tttgaga 811
>emb|AJ271049.1|ZMA271049 Zea mays mRNA for Toc34-2 protein (toc34B gene) Length = 1313 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 330 taacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatgaatcgccctcctg 389 |||||||||||||||||||| | ||||||||| | || || | ||| |||||||||| | Sbjct: 1043 taacgctgctcccagtcatctaccttcccgtttgcgatatctgcatggatcgccctccgg 984 Query: 390 attccttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtacttcttccag 449 |||||||||||||| || ||||||| |||||||||||| || |||||| || ||| | | Sbjct: 983 attccttttaccaccaagaagtactccacagcaaggataagtggtatgaacaactttcgg 924 Query: 450 cgattgttcggatttggaccgtcgattaacttctgatcaacatgaatggacctgcttcca 509 |||||||| || |||||||| || ||||||||||||||||||||||||| ||||| || Sbjct: 923 cgattgttagggtttggaccatcaattaacttctgatcaacatgaatgggactgctcccg 864 Query: 510 tttgaga 516 ||||||| Sbjct: 863 tttgaga 857
>gb|AY107292.1| Zea mays PCO067487 mRNA sequence Length = 1391 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 330 taacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatgaatcgccctcctg 389 |||||||||||||||||||||| |||||| || | || || | ||| |||||||||| | Sbjct: 1086 taacgctgctcccagtcatccaccttcccatttgcgatatctgcatggatcgccctccgg 1027 Query: 390 attccttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtacttcttccag 449 ||||||||||| || || ||||||| ||||||||| || | |||||| || |||||||| Sbjct: 1026 attccttttactaccaagaagtactccacagcaagtataattggtatgaacatcttccag 967 Query: 450 cgattgttcggatttggaccgtcgattaacttctgatcaacatgaatggacctgcttcca 509 |||||||| || |||||||| || ||||||||||||||||||||||||| | |||| || Sbjct: 966 cgattgttagggtttggaccatcaattaacttctgatcaacatgaatgggcttgctcccg 907 Query: 510 tttgaga 516 ||||||| Sbjct: 906 tttgaga 900
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 1e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 258 gctcaggccttagggttgcgggatgacgaaactttttggtctaccgggttaccgcttcca 317 ||||| ||||| |||||| |||||| ||| |||| ||||||||||||| ||||||| Sbjct: 7403871 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 7403930 Query: 318 accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatga 377 |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||| |||| Sbjct: 7403931 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtcagcatga 7403990 Query: 378 atcgccctcctgattccttttaccacaaaaaagtactg 415 || ||||| | ||| |||||||| || ||||||||||| Sbjct: 7403991 atggcccttcggatgccttttacaaccaaaaagtactg 7404028 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 422 aaggatgagaggtatgtacttcttccagcgattgttcggatttggaccgtcgattaactt 481 ||||||||| |||||| || |||||||||||||||| ||||||||||| || |||| ||| Sbjct: 7404136 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 7404195 Query: 482 ctgatcaacatgaatggacctgcttccatttgagac 517 ||||||||||||||||| |||| || |||||||| Sbjct: 7404196 ttgatcaacatgaatggatttgctcccgtttgagac 7404231
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 115 bits (58), Expect = 1e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 258 gctcaggccttagggttgcgggatgacgaaactttttggtctaccgggttaccgcttcca 317 ||||| ||||| |||||| |||||| ||| |||| ||||||||||||| ||||||| Sbjct: 42426 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 42485 Query: 318 accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatga 377 |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||| |||| Sbjct: 42486 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtcagcatga 42545 Query: 378 atcgccctcctgattccttttaccacaaaaaagtactg 415 || ||||| | ||| |||||||| || ||||||||||| Sbjct: 42546 atggcccttcggatgccttttacaaccaaaaagtactg 42583 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 422 aaggatgagaggtatgtacttcttccagcgattgttcggatttggaccgtcgattaactt 481 ||||||||| |||||| || |||||||||||||||| ||||||||||| || |||| ||| Sbjct: 42691 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 42750 Query: 482 ctgatcaacatgaatggacctgcttccatttgagac 517 ||||||||||||||||| |||| || |||||||| Sbjct: 42751 ttgatcaacatgaatggatttgctcccgtttgagac 42786
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 1e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 258 gctcaggccttagggttgcgggatgacgaaactttttggtctaccgggttaccgcttcca 317 ||||| ||||| |||||| |||||| ||| |||| ||||||||||||| ||||||| Sbjct: 7401706 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 7401765 Query: 318 accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatga 377 |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||| |||| Sbjct: 7401766 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtcagcatga 7401825 Query: 378 atcgccctcctgattccttttaccacaaaaaagtactg 415 || ||||| | ||| |||||||| || ||||||||||| Sbjct: 7401826 atggcccttcggatgccttttacaaccaaaaagtactg 7401863 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 422 aaggatgagaggtatgtacttcttccagcgattgttcggatttggaccgtcgattaactt 481 ||||||||| |||||| || |||||||||||||||| ||||||||||| || |||| ||| Sbjct: 7401971 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 7402030 Query: 482 ctgatcaacatgaatggacctgcttccatttgagac 517 ||||||||||||||||| |||| || |||||||| Sbjct: 7402031 ttgatcaacatgaatggatttgctcccgtttgagac 7402066
>gb|AC091602.6| Homo sapiens BAC clone RP11-655M19 from 4, complete sequence Length = 189458 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 acaataacatttgcaaaattgc 74 |||||||||||||||||||||| Sbjct: 71550 acaataacatttgcaaaattgc 71571
>emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 in linkage group 1, complete sequence Length = 160094 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 366 atgtcagaatgaatcgccctcctga 390 |||||||||||||| |||||||||| Sbjct: 120806 atgtcagaatgaatagccctcctga 120782
>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete sequence Length = 167444 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 aacaaaagaacagcacaggaa 210 ||||||||||||||||||||| Sbjct: 37484 aacaaaagaacagcacaggaa 37464
>gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete sequence Length = 192157 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 158630 ttccagcgattgttcggatt 158649
>gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence Length = 155300 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 atcgccctcctgattccttt 397 |||||||||||||||||||| Sbjct: 47892 atcgccctcctgattccttt 47873
>gb|AC164296.2| Mus musculus BAC clone RP24-342N6 from chromosome 16, complete sequence Length = 206816 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 tcacaacaataacatttgcaaaat 71 ||||| |||||||||||||||||| Sbjct: 42244 tcacaccaataacatttgcaaaat 42267
>gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete sequence Length = 189774 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 aggtatgtacttcttccagc 450 |||||||||||||||||||| Sbjct: 45323 aggtatgtacttcttccagc 45342
>emb|BX004827.18| Human DNA sequence from clone RP13-391G2 on chromosome X Contains the SHOX gene for short stature homeobox and seven CpG islands, complete sequence Length = 119555 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aataacatttgcaaaattgc 74 |||||||||||||||||||| Sbjct: 47868 aataacatttgcaaaattgc 47849
>emb|AL732314.18| Human DNA sequence from clone RP13-465B17 on chromosome X Contains the 5' end of the gene for protein phosphatase 2A 48 kDa regulatory subunit (PR48), a fatty acid binding protein 5 (psoriasis-associated) (FABP5) pseudogene, a pseudogene similar to part of keratin 18 (KRT18) and nine CpG islands, complete sequence Length = 218723 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aataacatttgcaaaattgc 74 |||||||||||||||||||| Sbjct: 213413 aataacatttgcaaaattgc 213394
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aacacaataaattcaaataa 36 |||||||||||||||||||| Sbjct: 92157 aacacaataaattcaaataa 92176
>ref|NM_166403.1| Drosophila melanogaster CG9945-RB, transcript variant B (CG9945), mRNA Length = 2075 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 454 ttccagcgattgttcggatt 435
>ref|NM_137650.2| Drosophila melanogaster CG9945-RA, transcript variant A (CG9945), mRNA Length = 1996 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 454 ttccagcgattgttcggatt 435
>gb|AY075228.1| Drosophila melanogaster AT18160 full length cDNA Length = 1949 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 454 ttccagcgattgttcggatt 435
>gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete sequence Length = 94665 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ggagcaacaaaagaacagca 204 |||||||||||||||||||| Sbjct: 5473 ggagcaacaaaagaacagca 5454
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cacaataaattcaaataact 38 |||||||||||||||||||| Sbjct: 1808830 cacaataaattcaaataact 1808849
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aacacaataaattcaaataa 36 |||||||||||||||||||| Sbjct: 25874747 aacacaataaattcaaataa 25874766
>gb|AC009218.7|AC009218 Drosophila melanogaster, chromosome 2R, region 57B-57B, BAC clone BACR33D17, complete sequence Length = 156753 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 62064 ttccagcgattgttcggatt 62045
>gb|AC007837.4|AC007837 Drosophila melanogaster, chromosome 2R, region 57B2-B3, BAC clone BACR04I07, complete sequence Length = 123647 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 28958 ttccagcgattgttcggatt 28939
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 aggcaacacaataaattcaaataactgt 40 ||||||||||| |||| ||||||||||| Sbjct: 1699079 aggcaacacaacaaatgcaaataactgt 1699106
>gb|AC137591.1| Homo sapiens chromosome X clone XX-B6cos map Xp22-PAR, complete sequence Length = 32799 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aataacatttgcaaaattgc 74 |||||||||||||||||||| Sbjct: 1150 aataacatttgcaaaattgc 1131
>gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59 of 73 of the complete sequence Length = 263535 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttccagcgattgttcggatt 463 |||||||||||||||||||| Sbjct: 104906 ttccagcgattgttcggatt 104887
>gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosome 6, complete sequence Length = 187643 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 acaataacatttgcaaaatt 72 |||||||||||||||||||| Sbjct: 60437 acaataacatttgcaaaatt 60456
>gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, complete sequence Length = 196059 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 aggtatgtacttcttccagc 450 |||||||||||||||||||| Sbjct: 46662 aggtatgtacttcttccagc 46643
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence Length = 139226 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aacacaataaattcaaataa 36 |||||||||||||||||||| Sbjct: 1009 aacacaataaattcaaataa 1028
>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete sequence Length = 165700 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ttgtccctgagagctctata 156 |||||||||||||||||||| Sbjct: 20041 ttgtccctgagagctctata 20060 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,367,574 Number of Sequences: 3902068 Number of extensions: 4367574 Number of successful extensions: 91190 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91040 Number of HSP's gapped (non-prelim): 142 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)