ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POMT1_MOUSE (Q8R2R1) Protein O-mannosyl-transferase 1 (EC 2.4.1.... 31 3.1
2PYGO1_HUMAN (Q9Y3Y4) Pygopus homolog 1 30 6.9
3Y1528_MYCBO (P67118) Hypothetical UPF0043 protein Mb1528c 29 9.0
4Y1491_MYCTU (P67117) Hypothetical UPF0043 protein Rv1491c/MT1538 29 9.0
5ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V... 29 9.0

>POMT1_MOUSE (Q8R2R1) Protein O-mannosyl-transferase 1 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           1)
          Length = 746

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 589 LVWTSDSLNASTANSSISSWLLL-YTRSLCTL-ETAWTRW 476
           ++WTS SL A+   + +  W LL   RS+C L E AW+RW
Sbjct: 598 VIWTSASL-ATVVYTLLFFWYLLRRRRSICDLPEDAWSRW 636



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>PYGO1_HUMAN (Q9Y3Y4) Pygopus homolog 1|
          Length = 419

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  NRASTKPRQPAGRANAITTSQHK*IYSYPNIYHH 120
           N    KPRQP G A+A TT +      +PN + H
Sbjct: 301 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGH 334



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>Y1528_MYCBO (P67118) Hypothetical UPF0043 protein Mb1528c|
          Length = 252

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QAMETVEEDVEEYSWREVVLPRLIPVVPHAA 344
           +A+  ++E + E  W  ++  RLIPVVP AA
Sbjct: 135 RAINRLDERLRERGWLAILSLRLIPVVPFAA 165



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>Y1491_MYCTU (P67117) Hypothetical UPF0043 protein Rv1491c/MT1538|
          Length = 252

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QAMETVEEDVEEYSWREVVLPRLIPVVPHAA 344
           +A+  ++E + E  W  ++  RLIPVVP AA
Sbjct: 135 RAINRLDERLRERGWLAILSLRLIPVVPFAA 165



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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   GLVGEGTAPARNPGSRQAEPTPS 70
           GL+   T PAR P  RQ  PTP+
Sbjct: 79  GLMDAATPPARPPAERQGSPTPA 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,528,927
Number of Sequences: 219361
Number of extensions: 983990
Number of successful extensions: 5725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5716
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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