ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33g12 |
|---|---|
| Clone Library Name | barley_pub |
>TNR3_SCHPO (P41888) Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK) (Thiamine| kinase) Length = 569 Score = 41.6 bits (96), Expect = 5e-04 Identities = 15/40 (37%), Positives = 28/40 (70%) Frame = -1 Query: 391 WNLDNTSMNFGGLLSTSNIVEEETVTVTSDSDLIWTISLR 272 WN+++ FGGL+S+ N+V + TVT+ ++ ++WT+ R Sbjct: 529 WNIEDRICQFGGLVSSCNVVTKATVTIEVNNFIVWTMETR 568
>TPK1_MOUSE (Q9R0M5) Thiamin pyrophosphokinase 1 (EC 2.7.6.2) (Thiamine| pyrophosphokinase 1) (mTPK1) Length = 243 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = -1 Query: 394 RWNLDNTSMNFGGLLSTSNIVE-EETVTVTSDSDLIWTISLR 272 +WNL N + FG L+STSN + VTV +D L+WT++++ Sbjct: 201 KWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLWTMAIK 242
>TPK1_HUMAN (Q9H3S4) Thiamin pyrophosphokinase 1 (EC 2.7.6.2) (Thiamine| pyrophosphokinase 1) (hTPK1) (Placental protein 20) (PP20) Length = 243 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = -1 Query: 394 RWNLDNTSMNFGGLLSTSNIVE-EETVTVTSDSDLIWTISLR 272 +WNL N + FG L+STSN + VTV +D L+WT++++ Sbjct: 201 KWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMAIK 242
>TPK1_CAEEL (P30636) Thiamin pyrophosphokinase 1 (EC 2.7.6.2) (Thiamine| pyrophosphokinase 1) (TPK1) Length = 243 Score = 34.3 bits (77), Expect = 0.074 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -1 Query: 394 RWNLDNTSMNFGGLLSTSNIVEEETVTVTSDSDLIWTISL 275 ++ ++N ++ FG L+STSN V V + S S LI++I L Sbjct: 194 KYEMENLALEFGKLISTSNEVTTSQVFLKSSSSLIFSIEL 233
>AL2S4_MOUSE (Q3V0J1) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 4 protein homolog Length = 427 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = -2 Query: 222 ARRFYVAGFDNLL*CVLI*FISLDIRPQWTGE---AGVHVFQHLISLFVHFMLSKCKV 58 +RRF A L+ +S+D++P WT VH ++ LF H L+ C V Sbjct: 206 SRRFQAADRSELIKTTENIDVSMDVKPSWTTRDVALSVHRAFRMVGLFSHGFLAGCAV 263
>AL2S4_HUMAN (Q96Q45) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 4 protein Length = 432 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = -2 Query: 222 ARRFYVAGFDNLL*CVLI*FISLDIRPQWTGE---AGVHVFQHLISLFVHFMLSKCKV 58 +RRF A L+ +S+D++P WT VH +I LF H L+ C V Sbjct: 208 SRRFQAADRSELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAV 265
>EFC1_HUMAN (P60507) HERV-F(c)1_Xq21.33 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (Fc1env) (HERV-Fc1env) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 584 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Frame = -1 Query: 250 CTVDYG*NFGS--SILRGWFRQFTVMCFDIVHFIGHSAAMDRRGRCPCISASYFLICAFH 77 C NF S S+LRGW +D H +D G CP + C H Sbjct: 62 CQAQVTFNFTSFKSVLRGWSNPTICFVYDQTHSNCRDYWVDTNGGCP------YAYCRMH 115 Query: 76 VVKVQSA 56 V ++ +A Sbjct: 116 VTQLHTA 122
>NUT1_MAGGR (Q01168) Nitrogen regulatory protein NUT1| Length = 956 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 143 GRMSNEMNYIKTHHSKLS 196 GRM NE Y+K HH K S Sbjct: 225 GRMDNEFGYLKRHHRKTS 242
>EFC1_PANTR (Q8MIB6) ERV-F(c)1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (CpzERV-Fc1env envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 584 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Frame = -1 Query: 250 CTVDYG*NFGS--SILRGWFRQFTVMCFDIVHFIGHSAAMDRRGRCPCISASYFLICAFH 77 C NF S S+LRGW +D H +D G CP + C H Sbjct: 62 CQAQVTFNFTSFKSVLRGWSNPTIGFVYDQTHSNCRDYWVDTNGGCP------YAYCRMH 115 Query: 76 VVKVQSA 56 V ++ +A Sbjct: 116 VTQLDTA 122
>EFC1_GORGO (P61551) ERV-F(c)1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (GorERV-Fc1env envelope protein) [Includes: Truncated surface protein (SU)] Length = 179 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Frame = -1 Query: 250 CTVDYG*NFGS--SILRGWFRQFTVMCFDIVHFIGHSAAMDRRGRCPCISASYFLICAFH 77 C NF S S+LRGW +D H D G CP + C H Sbjct: 62 CQAQVTFNFTSFKSVLRGWSNPTICFVYDQTHSNCRDYWADTNGGCP------YAYCHMH 115 Query: 76 VVKVQSA 56 V ++ +A Sbjct: 116 VTQLDTA 122
>PKDRE_MOUSE (Q9Z0T6) Polycystic kidney disease and receptor for egg| jelly-related protein precursor (PKD and REJ homolog) Length = 2126 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = -2 Query: 162 ISLDIRPQWTGEAGVHVFQHLISLFVHFMLSKCKV 58 IS ++ +WTGE +H+ ++ LF + C++ Sbjct: 869 ISFEVDSRWTGELLIHIVTNVTVLFEALVYEGCQL 903 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,762,511 Number of Sequences: 219361 Number of extensions: 1131163 Number of successful extensions: 2599 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2597 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
