ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190023.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
2dbj|AK105048.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
3dbj|AK064797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
5dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
7gb|AY110846.1| Zea mays CL4703_1 mRNA sequence 64 4e-07
8gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
9gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
11dbj|AK108439.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
12gb|AC023886.7| Homo sapiens BAC clone RP11-402J6 from 4, complet... 46 0.085
13emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 i... 44 0.34
14gb|AC167137.7| Mus musculus chromosome 1, clone RP23-408P8, comp... 42 1.3
15gb|AC138399.18| Mus musculus chromosome 1, clone RP23-113N18, co... 42 1.3
16emb|BX321906.30| Zebrafish DNA sequence from clone DKEYP-45E9 in... 42 1.3
17emb|BX640592.10| Zebrafish DNA sequence from clone CH211-132E23 ... 42 1.3
18dbj|AB072276.1| Ipomoea nil transposon Tpn106 DNA, complete sequ... 42 1.3
19gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 5.3
20gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 5.3
21gb|AF550495.1| Crucibulum concamarata isolation-source Islas de ... 40 5.3
22gb|AC129202.3| Mus musculus BAC clone RP24-225J1 from chromosome... 40 5.3
23gb|AC122794.3| Mus musculus BAC clone RP24-202L5 from chromosome... 40 5.3
24ref|XM_949459.1| Theileria annulata strain Ankara seryl-tRNA syn... 40 5.3
25gb|AC116110.7| Mus musculus chromosome 6, clone RP23-19B12, comp... 40 5.3
26gb|AC146650.13| Medicago truncatula clone mth2-14j5, complete se... 40 5.3
27gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete s... 40 5.3
28emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049 40 5.3
29gb|AC110772.3| Homo sapiens BAC clone RP11-217E13 from 4, comple... 40 5.3
30gb|AC091821.3| Homo sapiens chromosome 5 clone CTC-325G23, compl... 40 5.3
31gb|AC007045.5| Arabidopsis thaliana chromosome 2 clone F23M2 map... 40 5.3
32ref|XM_227003.3| PREDICTED: Rattus norvegicus Hermansky-Pudlak s... 40 5.3
33emb|AL935034.18| Zebrafish DNA sequence from clone CH211-160A3 i... 40 5.3
34dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 5.3
35gb|AC129885.3| Didelphis virginiana clone LB3-35M17, complete se... 40 5.3
36emb|BX005161.6| Zebrafish DNA sequence from clone CH211-168N16 i... 40 5.3
37gb|AF124731.2|AF124731 Homo sapiens chromosome 21q22.1 PAC A2029... 40 5.3
38gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.55... 40 5.3
39gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 5.3 
>ref|NM_190023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
           ||||| || |||||||||||||||| ||||||||| ||||||| | | || || ||||| 
Sbjct: 770 ttccggagtgatattgtccaaatcagatcagaatctgaagtgatcctaactgtttcctct 711

                                                                       
Query: 330 tccacaatgtttgatgtgctcagcagtccgccaaaattcatgctagtgttatctaggttc 389
           ||||| ||||| |||||||| | |||||| ||  |  |||||||||| |||||||  |||
Sbjct: 710 tccacgatgttagatgtgcttatcagtccaccgtagctcatgctagtattatctaaattc 651

                
Query: 390 caccg 394
           |||||
Sbjct: 650 caccg 646
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>dbj|AK105048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H01, full
            insert sequence
          Length = 1277

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                        
Query: 270  ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
            ||||| || |||||||||||||||| ||||||||| ||||||| | | || || ||||| 
Sbjct: 1074 ttccggagtgatattgtccaaatcagatcagaatctgaagtgatcctaactgtttcctct 1015

                                                                        
Query: 330  tccacaatgtttgatgtgctcagcagtccgccaaaattcatgctagtgttatctaggttc 389
            ||||| ||||| |||||||| | |||||| ||  |  |||||||||| |||||||  |||
Sbjct: 1014 tccacgatgttagatgtgcttatcagtccaccgtagctcatgctagtattatctaaattc 955

                 
Query: 390  caccg 394
            |||||
Sbjct: 954  caccg 950
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>dbj|AK064797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D02, full
            insert sequence
          Length = 2136

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                        
Query: 270  ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
            ||||| || |||||||||||||||| ||||||||| ||||||| | | || || ||||| 
Sbjct: 1935 ttccggagtgatattgtccaaatcagatcagaatctgaagtgatcctaactgtttcctct 1876

                                                                        
Query: 330  tccacaatgtttgatgtgctcagcagtccgccaaaattcatgctagtgttatctaggttc 389
            ||||| ||||| |||||||| | |||||| ||  |  |||||||||| |||||||  |||
Sbjct: 1875 tccacgatgttagatgtgcttatcagtccaccgtagctcatgctagtattatctaaattc 1816

                 
Query: 390  caccg 394
            |||||
Sbjct: 1815 caccg 1811
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 94/114 (82%)
 Strand = Plus / Plus

                                                                            
Query: 270      ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
                ||||| || |||||||||||||||| ||||||||| ||||||| | | || || ||||| 
Sbjct: 40861270 ttccggagtgatattgtccaaatcagatcagaatctgaagtgatcctaactgtttcctct 40861329

                                                                      
Query: 330      tccacaatgtttgatgtgctcagcagtccgccaaaattcatgctagtgttatct 383
                ||||| ||||| |||||||| | |||||| ||  |  |||||||||| ||||||
Sbjct: 40861330 tccacgatgttagatgtgcttatcagtccaccgtagctcatgctagtattatct 40861383
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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 94/114 (82%)
 Strand = Plus / Plus

                                                                          
Query: 270    ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
              ||||| || |||||||||||||||| ||||||||| ||||||| | | || || ||||| 
Sbjct: 163916 ttccggagtgatattgtccaaatcagatcagaatctgaagtgatcctaactgtttcctct 163975

                                                                    
Query: 330    tccacaatgtttgatgtgctcagcagtccgccaaaattcatgctagtgttatct 383
              ||||| ||||| |||||||| | |||||| ||  |  |||||||||| ||||||
Sbjct: 163976 tccacgatgttagatgtgcttatcagtccaccgtagctcatgctagtattatct 164029
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>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 94/114 (82%)
 Strand = Plus / Plus

                                                                         
Query: 270   ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
             ||||| || |||||||||||||||| ||||||||| ||||||| | | || || ||||| 
Sbjct: 73376 ttccggagtgatattgtccaaatcagatcagaatctgaagtgatcctaactgtttcctct 73435

                                                                   
Query: 330   tccacaatgtttgatgtgctcagcagtccgccaaaattcatgctagtgttatct 383
             ||||| ||||| |||||||| | |||||| ||  |  |||||||||| ||||||
Sbjct: 73436 tccacgatgttagatgtgcttatcagtccaccgtagctcatgctagtattatct 73489
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>gb|AY110846.1| Zea mays CL4703_1 mRNA sequence
          Length = 589

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttccgaagcgatattgtccaaatcaaatcagaatccgaagtgaccgttacagtctcctcc 329
           |||||||||||||| ||||||| || ||||||||| ||||| ||||||||  | || || 
Sbjct: 478 ttccgaagcgatatggtccaaaccagatcagaatctgaagtcaccgttactttatcgtca 419

                               
Query: 330 tccacaatgtttgatgtgct 349
           ||||| ||||| ||||||||
Sbjct: 418 tccacgatgttagatgtgct 399
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>gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02,
              complete sequence
          Length = 135231

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 276    agcgatattgtccaaatcaaatcagaatccgaagtga 312
              |||||||||||||||||||  |||||||| |||||||
Sbjct: 128235 agcgatattgtccaaatcaggtcagaatctgaagtga 128271
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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
             complete sequence
          Length = 159932

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 276   agcgatattgtccaaatcaaatcagaatccgaagtga 312
             |||||||||||||||||||  |||||||| |||||||
Sbjct: 30690 agcgatattgtccaaatcaggtcagaatctgaagtga 30726
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 276      agcgatattgtccaaatcaaatcagaatccgaagtga 312
                |||||||||||||||||||  |||||||| |||||||
Sbjct: 17500885 agcgatattgtccaaatcaggtcagaatctgaagtga 17500921
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>dbj|AK108439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B09, full
           insert sequence
          Length = 1202

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 276 agcgatattgtccaaatcaaatcagaatccgaagtga 312
           |||||||||||||||||||  |||||||| |||||||
Sbjct: 912 agcgatattgtccaaatcaggtcagaatctgaagtga 876
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>gb|AC023886.7| Homo sapiens BAC clone RP11-402J6 from 4, complete sequence
          Length = 179697

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 150   tgtccaatgaaatgaactatatc 172
             |||||||||||||||||||||||
Sbjct: 74945 tgtccaatgaaatgaactatatc 74967
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>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
             complete sequence
          Length = 183357

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                           
Query: 47    tagtaaaacagca-ctttgcactttgacaa 75
             ||||||||||||| ||||||||||||||||
Sbjct: 60530 tagtaaaacagcatctttgcactttgacaa 60559
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>gb|AC167137.7| Mus musculus chromosome 1, clone RP23-408P8, complete sequence
          Length = 184702

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    aacatgaaatgcacaaataaggaaa 98
             |||||||||||||||||||| ||||
Sbjct: 88866 aacatgaaatgcacaaataaagaaa 88842
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>gb|AC138399.18| Mus musculus chromosome 1, clone RP23-113N18, complete sequence
          Length = 219810

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    aacatgaaatgcacaaataaggaaa 98
             |||||||||||||||||||| ||||
Sbjct: 39691 aacatgaaatgcacaaataaagaaa 39715
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>emb|BX321906.30| Zebrafish DNA sequence from clone DKEYP-45E9 in linkage group 10,
             complete sequence
          Length = 164266

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 241   ctactgtacaatacacaatttaagt 265
             ||||||||||| |||||||||||||
Sbjct: 31676 ctactgtacaagacacaatttaagt 31652
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>emb|BX640592.10| Zebrafish DNA sequence from clone CH211-132E23 in linkage group 4,
              complete sequence
          Length = 186123

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 241    ctactgtacaatacacaatttaagt 265
              ||||||||||| |||||||||||||
Sbjct: 177513 ctactgtacaagacacaatttaagt 177537
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>dbj|AB072276.1| Ipomoea nil transposon Tpn106 DNA, complete sequence
          Length = 7090

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 55   cagcactttgcactttgacaa 75
            |||||||||||||||||||||
Sbjct: 4451 cagcactttgcactttgacaa 4431
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     gctcagcagtccgccaaaat 366
               ||||||||||||||||||||
Sbjct: 2488597 gctcagcagtccgccaaaat 2488616
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     gctcagcagtccgccaaaat 366
               ||||||||||||||||||||
Sbjct: 2489458 gctcagcagtccgccaaaat 2489477
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>gb|AF550495.1| Crucibulum concamarata isolation-source Islas de las Perlas, Panama
           cytochrome oxidase subunit I gene, partial cds;
           mitochondrial
          Length = 647

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  ataatagtagtaaaacagca 59
           ||||||||||||||||||||
Sbjct: 541 ataatagtagtaaaacagca 522
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>gb|AC129202.3| Mus musculus BAC clone RP24-225J1 from chromosome 13, complete sequence
          Length = 168558

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ataataatagtagtaaaaca 56
             ||||||||||||||||||||
Sbjct: 52203 ataataatagtagtaaaaca 52222
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>gb|AC122794.3| Mus musculus BAC clone RP24-202L5 from chromosome 8, complete sequence
          Length = 157120

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   ctcctcctccacaatgtttg 342
             ||||||||||||||||||||
Sbjct: 39284 ctcctcctccacaatgtttg 39303
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>ref|XM_949459.1| Theileria annulata strain Ankara seryl-tRNA synthetase (TA19195)
           partial mRNA
          Length = 1755

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  ataataatagtagtaaaaca 56
           ||||||||||||||||||||
Sbjct: 284 ataataatagtagtaaaaca 303
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>gb|AC116110.7| Mus musculus chromosome 6, clone RP23-19B12, complete sequence
          Length = 182667

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    agccaaaatttcaaccataa 239
              ||||||||||||||||||||
Sbjct: 104101 agccaaaatttcaaccataa 104082
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>gb|AC146650.13| Medicago truncatula clone mth2-14j5, complete sequence
          Length = 95379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   cacaatgtttgatgtgctca 351
             ||||||||||||||||||||
Sbjct: 61781 cacaatgtttgatgtgctca 61762
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>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence
          Length = 135139

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   cacaatgtttgatgtgctca 351
             ||||||||||||||||||||
Sbjct: 37524 cacaatgtttgatgtgctca 37505
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>emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     acaaataaggaaataagatg 105
              ||||||||||||||||||||
Sbjct: 283960 acaaataaggaaataagatg 283979
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>gb|AC110772.3| Homo sapiens BAC clone RP11-217E13 from 4, complete sequence
          Length = 192046

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     aggaaataagatgctgaaatacat 116
              |||||||||||||||| |||||||
Sbjct: 117263 aggaaataagatgctgtaatacat 117286
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>gb|AC091821.3| Homo sapiens chromosome 5 clone CTC-325G23, complete sequence
          Length = 141771

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     cagcactttgcactttgaca 74
              ||||||||||||||||||||
Sbjct: 126685 cagcactttgcactttgaca 126666
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>gb|AC007045.5| Arabidopsis thaliana chromosome 2 clone F23M2 map mi421, complete
             sequence
          Length = 117945

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 171   tcaaaacacatcacagtaaattgt 194
             |||| |||||||||||||||||||
Sbjct: 23975 tcaatacacatcacagtaaattgt 23952
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>ref|XM_227003.3| PREDICTED: Rattus norvegicus Hermansky-Pudlak syndrome 3
           (predicted) (Hps3_predicted), mRNA
          Length = 2550

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  gacaacatgaaatgcacaaa 90
           ||||||||||||||||||||
Sbjct: 427 gacaacatgaaatgcacaaa 408
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>emb|AL935034.18| Zebrafish DNA sequence from clone CH211-160A3 in linkage group 12,
             complete sequence
          Length = 171213

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   aatttcaaccataatctact 245
             ||||||||||||||||||||
Sbjct: 88093 aatttcaaccataatctact 88112
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 79      gaaatgcacaaataaggaaa 98
               ||||||||||||||||||||
Sbjct: 1326171 gaaatgcacaaataaggaaa 1326190
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>gb|AC129885.3| Didelphis virginiana clone LB3-35M17, complete sequence
          Length = 164861

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    catgaaatgcacaaataaggaaat 99
             |||| |||||||||||||||||||
Sbjct: 18004 catgtaatgcacaaataaggaaat 18027
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>emb|BX005161.6| Zebrafish DNA sequence from clone CH211-168N16 in linkage group 20,
             complete sequence
          Length = 150884

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tatcaaaacacatcacagta 188
             ||||||||||||||||||||
Sbjct: 84952 tatcaaaacacatcacagta 84933
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>gb|AF124731.2|AF124731 Homo sapiens chromosome 21q22.1 PAC A20292 containing BACH-1 gene,
             complete sequence
          Length = 107898

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    acaaataaggaaataagatg 105
             ||||||||||||||||||||
Sbjct: 25273 acaaataaggaaataagatg 25292
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>gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.556_O_9, complete sequence
          Length = 179929

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   caaaacacatcacagtaaat 191
             ||||||||||||||||||||
Sbjct: 49246 caaaacacatcacagtaaat 49227
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     catgaaatgcacaaataaggaaat 99
              |||| |||||||||||||||||||
Sbjct: 645283 catgtaatgcacaaataaggaaat 645306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,913,972
Number of Sequences: 3902068
Number of extensions: 3913972
Number of successful extensions: 80563
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80399
Number of HSP's gapped (non-prelim): 165
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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