ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNF41_HUMAN (P51814) Zinc finger protein 41 30 3.2
2Z585A_PONPY (Q5RDX1) Zinc finger protein 585A 29 5.5
3Z585B_PONPY (Q5RB30) Zinc finger protein 585B 28 9.4
4Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger prote... 28 9.4
5PFA3_YARLI (Q6C4W5) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Prot... 28 9.4
6ZN200_HUMAN (P98182) Zinc finger protein 200 28 9.4

>ZNF41_HUMAN (P51814) Zinc finger protein 41|
          Length = 821

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 2   HGRITYG*HANRCTNQSKKVQGR*VQLVTTQRKSDGRTTKHCCYLGK--TNEANISKVGY 175
           H RI  G     CT   K    R   L T Q+   G     C   GK  T+++N+ K   
Sbjct: 527 HQRIHTGEKPYICTECGKVFTHR-TNLTTHQKTHTGEKPYMCAECGKAFTDQSNLIKHQK 585

Query: 176 SHTDTRRYSCS 208
           +HT  + Y C+
Sbjct: 586 THTGEKPYKCN 596



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>Z585A_PONPY (Q5RDX1) Zinc finger protein 585A|
          Length = 737

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 2   HGRITYG*HANRCTNQSKKVQGR*VQLVTTQRKSDGRTTKHCCYLGK--TNEANISKVGY 175
           H RI  G     C++  K    +  QL   QR   G     C   GK  T+ +N++K   
Sbjct: 648 HHRIHTGEKPYECSDCGKSFTKK-SQLQVHQRIHTGEKPYVCAECGKAFTDRSNLNKHQT 706

Query: 176 SHTDTRRYSC 205
           +HT  R Y C
Sbjct: 707 THTGDRPYKC 716



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>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 2   HGRITYG*HANRCTNQSKKVQGR*VQLVTTQRKSDGRTTKHCCYLGK--TNEANISKVGY 175
           H RI  G     C++  K    +  QL   QR   G     C   GK  +N +N++K   
Sbjct: 680 HHRIHTGEKPYECSDCGKSFTKK-SQLQVHQRIHTGEKPYVCAECGKAFSNRSNLNKHQT 738

Query: 176 SHTDTRRYSC 205
           +HT  + Y C
Sbjct: 739 THTGDKPYKC 748



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>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 2   HGRITYG*HANRCTNQSKKVQGR*VQLVTTQRKSDGRTTKHCCYLGK--TNEANISKVGY 175
           H RI  G     C++  K    +  QL   QR   G     C   GK  +N +N++K   
Sbjct: 680 HHRIHTGEKPYECSDCGKSFTKK-SQLQVHQRIHTGEKPYVCAECGKAFSNRSNLNKHQT 738

Query: 176 SHTDTRRYSC 205
           +HT  + Y C
Sbjct: 739 THTGDKPYKC 748



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>PFA3_YARLI (Q6C4W5) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 3)
          Length = 401

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 224 RWFFWGCRSIF*CLYDCILPWRCWLHLSSLGSSNAWWFC-HPISFELSLT 78
           +W F G ++    + + ++ W CW+H        AW  C  P  FE   T
Sbjct: 12  KWCFIGAKAFLPLVVNFLIIWACWVH--------AWLVCWEPQLFESDTT 53



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>ZN200_HUMAN (P98182) Zinc finger protein 200|
          Length = 394

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 80  LVTTQRKSDGRTTKHCCYLGKT--NEANISKVGYSHTDTRRYSCS 208
           L++ QR   G     C + GK+  ++ N++K    HT  + YSCS
Sbjct: 266 LISHQRTHTGEKPYDCNHCGKSFNHKTNLNKHERIHTGEKPYSCS 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,078,452
Number of Sequences: 219361
Number of extensions: 1306393
Number of successful extensions: 2725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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