Clone Name | rbart33g06 |
---|---|
Clone Library Name | barley_pub |
>LPE10_CANAL (Q59S85) Inner membrane magnesium transporter LPE10, mitochondrial| precursor Length = 453 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +1 Query: 22 DFMRCFAHRGPEHLLNIKHSITKPSSV----LNPQDFTSWTWRDAGCRDASASTTSSSGC 189 D++RC ++ I K + L P+DF + W+ + ++S++SSS Sbjct: 62 DYVRCSIFNANGDMIQHGKEILKSQFIKRYNLTPRDFRKFNWQRSATGTTTSSSSSSSSA 121 Query: 190 L*GDRSIGSARLPCPSSS 243 G S G+++ SSS Sbjct: 122 --GQTSSGTSKSSSLSSS 137
>CF075_MOUSE (Q9CWH5) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)| Length = 460 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = -1 Query: 364 YIPNHPDESVQWTVGRDMGGGFGCIRMATNIRLKFNALNGK----MKKGKATEHSQCYGH 197 Y P + +E V W C+R+ +N K ++ + M+K K E+ Y H Sbjct: 374 YTPEYTEEMVPW---------HPCLRLISNCEQKLSSHTARRLITMEKVKEFENRDKYSH 424 Query: 196 PISNHY 179 +S+H+ Sbjct: 425 LLSDHF 430
>AN36_HELPY (P94851) 36 kDa antigen| Length = 329 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = -1 Query: 334 QWTVGRDMGGGFGCIRMATNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKR 155 ++ VG++ G ++ +T R+K+ ++ G KAT +S Y + ++ + + Sbjct: 256 EFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTY--DMKSYEVEAIPLEE 313 Query: 154 LCNLRLAMS 128 L N R+ MS Sbjct: 314 LENFRVGMS 322
>LOLB_NEIMA (P57023) Outer-membrane lipoprotein lolB precursor| Length = 193 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -1 Query: 397 EGYPVELVKYKYIPNHPDESVQWTVGR--DMGGGFGCIRMAT---NIRLKFNAL 251 +G PV Y+ +P+ E WTVGR D GG +++ NIRL F + Sbjct: 123 DGRPVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTLQLNNGNLNIRLVFTEI 176
>MSH4_HUMAN (O15457) MutS protein homolog 4| Length = 936 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 160 SASTTSSSGCL*GDRSIGSARLPCPSSSCR 249 SAST + GDRS S+ LPCP+ + R Sbjct: 49 SASTCPGTSGAAGDRSSSSSSLPCPAPNSR 78
>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 28.9 bits (63), Expect = 3.1 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -1 Query: 211 QCYGHPISNHYCSSCLQ 161 +C H + +HYC SCL+ Sbjct: 40 ECVSHEVDSHYCPSCLE 56
>DCTN4_PONPY (Q5R7U7) Dynactin subunit 4 (Dynactin subunit p62)| Length = 460 Score = 28.9 bits (63), Expect = 3.1 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -1 Query: 211 QCYGHPISNHYCSSCLQ 161 +C H + +HYC SCL+ Sbjct: 40 ECVSHEVDSHYCPSCLE 56
>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 28.9 bits (63), Expect = 3.1 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -1 Query: 211 QCYGHPISNHYCSSCLQ 161 +C H + +HYC SCL+ Sbjct: 40 ECVSHEVDSHYCPSCLE 56
>DCTN4_HUMAN (Q9UJW0) Dynactin subunit 4 (Dynactin subunit p62)| Length = 460 Score = 28.9 bits (63), Expect = 3.1 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -1 Query: 211 QCYGHPISNHYCSSCLQ 161 +C H + +HYC SCL+ Sbjct: 40 ECVSHEVDSHYCPSCLE 56
>APAF_HUMAN (O14727) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1248 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 134 HVQEVKSCGFSTDDGFVILCLMFNK 60 H EV C FSTDD F+ C + K Sbjct: 656 HEDEVLCCAFSTDDRFIATCSVDKK 680
>CEZ1_HUMAN (Q6GQQ9) Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-)| (Cellular zinc finger anti-NF-kappa B protein) (Zinc finger protein Cezanne) Length = 843 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = -1 Query: 205 YGHPISNHYCSSCLQKRL 152 YGHP +N++CS C ++ L Sbjct: 810 YGHPETNNFCSCCYREEL 827
>CF075_HUMAN (Q7Z4G4) Putative RNA methylase C6orf75 (EC 2.1.1.-)| Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = -1 Query: 364 YIPNHPDESVQWTVGRDMGGGFGCIRMATNIRLKFNALNGK----MKKGKATEHSQCYGH 197 Y P + +E V W C+ + +N K ++ + M+K K E+ Y H Sbjct: 377 YTPEYTEEMVPW---------HPCLELVSNCEQKLSSHTSRRLITMEKVKKFENRDQYSH 427 Query: 196 PISNHY 179 +S+H+ Sbjct: 428 LLSDHF 433
>YX21_CAUCR (Q9A3I3) Hypothetical protein CC3221| Length = 275 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 404 PRRGLPCGAGEVQVHPQSPGRVGAVDCRPRHGRRL 300 P G GAG ++ H PGR G ++C R R L Sbjct: 221 PLFGDKLGAGRLKFHQAYPGRGGDLECENRGARVL 255
>CF075_PONPY (Q5R962) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)| Length = 463 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = -1 Query: 364 YIPNHPDESVQWTVGRDMGGGFGCIRMATNIRLKFNALNGK----MKKGKATEHSQCYGH 197 Y P + +E V W C+ + +N K ++ + M+K K E+ Y H Sbjct: 377 YTPEYTEEMVPW---------HPCLELISNCEQKLSSHTSRRLITMEKVKKFENRDQYSH 427 Query: 196 PISNHY 179 +S+H+ Sbjct: 428 LLSDHF 433
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 386 CGAGEVQVHPQSPGRVGAVDCRPRHG 309 CG G ++PQSPG+ C P HG Sbjct: 3203 CGVGYRDINPQSPGK----KCLPVHG 3224
>OXAA_BORPE (P65622) Inner membrane protein oxaA| Length = 563 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 213 ECSVALPFFILPLRALNLRRMLVAMRMHPKPP 308 + SV PFFILP A+ + M + ++++P PP Sbjct: 476 DLSVRDPFFILP--AIMMATMFLQIKLNPTPP 505
>OXAA_BORPA (Q7W2K1) Inner membrane protein oxaA| Length = 563 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 213 ECSVALPFFILPLRALNLRRMLVAMRMHPKPP 308 + SV PFFILP A+ + M + ++++P PP Sbjct: 476 DLSVRDPFFILP--AIMMATMFLQIKLNPTPP 505
>OXAA_BORBR (P65623) Inner membrane protein oxaA| Length = 563 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 213 ECSVALPFFILPLRALNLRRMLVAMRMHPKPP 308 + SV PFFILP A+ + M + ++++P PP Sbjct: 476 DLSVRDPFFILP--AIMMATMFLQIKLNPTPP 505
>SYE_PARUW (Q6MEN1) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 502 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -1 Query: 340 SVQWTVGRDMGGGFGCIRMATNIRLKFNALNGKMKKGKA 224 ++QW G D+GG +G R + + + KGKA Sbjct: 65 NIQWDEGPDIGGAYGPYRQSERFDIYKQYAEELLSKGKA 103
>AN36_HELPJ (Q9ZJD1) 36 kDa antigen| Length = 329 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/69 (23%), Positives = 34/69 (49%) Frame = -1 Query: 334 QWTVGRDMGGGFGCIRMATNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKR 155 ++ VG++ G ++ + R+K+ ++ G KAT +S Y + ++ + + Sbjct: 256 EFKVGKEFEGYIPALKRSAKFRVKYLSVMGDFATWKATNNSNTY--DMKSYEVEAIPLEE 313 Query: 154 LCNLRLAMS 128 L N R+ MS Sbjct: 314 LENFRVGMS 322
>FA47A_HUMAN (Q5JRC9) Protein FAM47A| Length = 778 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +1 Query: 301 SRRPCRGLQSTA--PTRPGDWGCTCTSPAPQGNP 396 +R PC G + T PT PG + C P P P Sbjct: 276 ARAPCEGREKTTDEPTEPGKYPCGKFCPRPFETP 309
>KIFC2_HUMAN (Q96AC6) Kinesin-like protein KIFC2| Length = 838 Score = 27.3 bits (59), Expect = 8.9 Identities = 24/90 (26%), Positives = 36/90 (40%) Frame = +1 Query: 91 PSSVLNPQDFTSWTWRDAGCRDASASTTSSSGCL*GDRSIGSARLPCPSSSCR*ER*IXX 270 PSS +P ++ W+W G +A + + G L S + R P P + R + Sbjct: 747 PSS--SPTEWVKWSWGQPG----AAGSRAPPGRLLP--SAPTLRSPGPPAPLRRPLAVLH 798 Query: 271 XXXXXXXXTRSRRPCRGLQSTAPTRPGDWG 360 R RP R S+ +RP WG Sbjct: 799 APVPTTARARLSRPQRACPSSPGSRPCPWG 828
>SYH_LISMO (Q8Y708) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -1 Query: 280 TNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKRLCN--LRLAMSKK*NPVG 107 TNI+L N+L K + K E + P + +C+ C Q RL LR+ KK + Sbjct: 158 TNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAEC-QVRLHKNPLRILDCKKDHDNP 216 Query: 106 LVQMMAS 86 L+Q S Sbjct: 217 LIQSAPS 223
>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -1 Query: 280 TNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKRLCN--LRLAMSKK*NPVG 107 TNI+L N+L K + K E + P + +C+ C Q RL LR+ KK + Sbjct: 158 TNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAEC-QVRLHKNPLRILDCKKDHDNP 216 Query: 106 LVQMMAS 86 L+Q S Sbjct: 217 LIQSAPS 223
>NIR_SYNP7 (P39661) Ferredoxin--nitrite reductase (EC 1.7.7.1)| Length = 512 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 288 RMHPKPPPMSRPTVHCTDS 344 R P+P P+SR TV CT S Sbjct: 381 RFSPQPAPLSRGTVSCTGS 399
>HTPG_WIGBR (Q8D228) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 638 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +1 Query: 64 LNIKHSITKPSSVLNPQDFTSWTWR 138 + +K ITK + +L P++ S+TW+ Sbjct: 209 IKLKTKITKDNKILTPEEKKSYTWK 233
>ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2967 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -3 Query: 122 VKSCGFSTDDGFVILCLMFNKCSGP 48 + S G++ D+ + LCL F KCS P Sbjct: 1031 LNSYGYARDERLLQLCLEFLKCSAP 1055
>YNT6_YEAST (P40167) Hypothetical 34.3 kDa protein in WHI3-CHS1 intergenic| region Length = 298 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 100 VLNPQDFTSWTWRDAGCRDASASTTSSS 183 VL +FTSW R + C S +TT SS Sbjct: 176 VLQDMEFTSWERRWSNCSTTSNATTVSS 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,435,255 Number of Sequences: 219361 Number of extensions: 1093408 Number of successful extensions: 3259 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3258 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)