>LPE10_CANAL (Q59S85) Inner membrane magnesium transporter LPE10, mitochondrial|
           precursor
          Length = 453

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +1

Query: 22  DFMRCFAHRGPEHLLNIKHSITKPSSV----LNPQDFTSWTWRDAGCRDASASTTSSSGC 189
           D++RC        ++     I K   +    L P+DF  + W+ +     ++S++SSS  
Sbjct: 62  DYVRCSIFNANGDMIQHGKEILKSQFIKRYNLTPRDFRKFNWQRSATGTTTSSSSSSSSA 121

Query: 190 L*GDRSIGSARLPCPSSS 243
             G  S G+++    SSS
Sbjct: 122 --GQTSSGTSKSSSLSSS 137

>CF075_MOUSE (Q9CWH5) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)|
          Length = 460

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -1

Query: 364 YIPNHPDESVQWTVGRDMGGGFGCIRMATNIRLKFNALNGK----MKKGKATEHSQCYGH 197
           Y P + +E V W           C+R+ +N   K ++   +    M+K K  E+   Y H
Sbjct: 374 YTPEYTEEMVPW---------HPCLRLISNCEQKLSSHTARRLITMEKVKEFENRDKYSH 424

Query: 196 PISNHY 179
            +S+H+
Sbjct: 425 LLSDHF 430

>AN36_HELPY (P94851) 36 kDa antigen|
          Length = 329

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = -1

Query: 334 QWTVGRDMGGGFGCIRMATNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKR 155
           ++ VG++  G    ++ +T  R+K+ ++ G     KAT +S  Y   + ++   +   + 
Sbjct: 256 EFKVGKEFEGYIPALKKSTKFRVKYLSVMGDFATWKATNNSNTY--DMKSYEVEAIPLEE 313

Query: 154 LCNLRLAMS 128
           L N R+ MS
Sbjct: 314 LENFRVGMS 322

>LOLB_NEIMA (P57023) Outer-membrane lipoprotein lolB precursor|
          Length = 193

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 397 EGYPVELVKYKYIPNHPDESVQWTVGR--DMGGGFGCIRMAT---NIRLKFNAL 251
           +G PV    Y+ +P+   E   WTVGR  D GG    +++     NIRL F  +
Sbjct: 123 DGRPVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTLQLNNGNLNIRLVFTEI 176

>MSH4_HUMAN (O15457) MutS protein homolog 4|
          Length = 936

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 160 SASTTSSSGCL*GDRSIGSARLPCPSSSCR 249
           SAST   +    GDRS  S+ LPCP+ + R
Sbjct: 49  SASTCPGTSGAAGDRSSSSSSLPCPAPNSR 78

>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)|
          Length = 467

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 211 QCYGHPISNHYCSSCLQ 161
           +C  H + +HYC SCL+
Sbjct: 40  ECVSHEVDSHYCPSCLE 56

>DCTN4_PONPY (Q5R7U7) Dynactin subunit 4 (Dynactin subunit p62)|
          Length = 460

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 211 QCYGHPISNHYCSSCLQ 161
           +C  H + +HYC SCL+
Sbjct: 40  ECVSHEVDSHYCPSCLE 56

>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)|
          Length = 467

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 211 QCYGHPISNHYCSSCLQ 161
           +C  H + +HYC SCL+
Sbjct: 40  ECVSHEVDSHYCPSCLE 56

>DCTN4_HUMAN (Q9UJW0) Dynactin subunit 4 (Dynactin subunit p62)|
          Length = 460

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 211 QCYGHPISNHYCSSCLQ 161
           +C  H + +HYC SCL+
Sbjct: 40  ECVSHEVDSHYCPSCLE 56

>APAF_HUMAN (O14727) Apoptotic protease-activating factor 1 (Apaf-1)|
          Length = 1248

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 134 HVQEVKSCGFSTDDGFVILCLMFNK 60
           H  EV  C FSTDD F+  C +  K
Sbjct: 656 HEDEVLCCAFSTDDRFIATCSVDKK 680

>CEZ1_HUMAN (Q6GQQ9) Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-)|
           (Cellular zinc finger anti-NF-kappa B protein) (Zinc
           finger protein Cezanne)
          Length = 843

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 205 YGHPISNHYCSSCLQKRL 152
           YGHP +N++CS C ++ L
Sbjct: 810 YGHPETNNFCSCCYREEL 827

>CF075_HUMAN (Q7Z4G4) Putative RNA methylase C6orf75 (EC 2.1.1.-)|
          Length = 463

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -1

Query: 364 YIPNHPDESVQWTVGRDMGGGFGCIRMATNIRLKFNALNGK----MKKGKATEHSQCYGH 197
           Y P + +E V W           C+ + +N   K ++   +    M+K K  E+   Y H
Sbjct: 377 YTPEYTEEMVPW---------HPCLELVSNCEQKLSSHTSRRLITMEKVKKFENRDQYSH 427

Query: 196 PISNHY 179
            +S+H+
Sbjct: 428 LLSDHF 433

>YX21_CAUCR (Q9A3I3) Hypothetical protein CC3221|
          Length = 275

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 404 PRRGLPCGAGEVQVHPQSPGRVGAVDCRPRHGRRL 300
           P  G   GAG ++ H   PGR G ++C  R  R L
Sbjct: 221 PLFGDKLGAGRLKFHQAYPGRGGDLECENRGARVL 255

>CF075_PONPY (Q5R962) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)|
          Length = 463

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -1

Query: 364 YIPNHPDESVQWTVGRDMGGGFGCIRMATNIRLKFNALNGK----MKKGKATEHSQCYGH 197
           Y P + +E V W           C+ + +N   K ++   +    M+K K  E+   Y H
Sbjct: 377 YTPEYTEEMVPW---------HPCLELISNCEQKLSSHTSRRLITMEKVKKFENRDQYSH 427

Query: 196 PISNHY 179
            +S+H+
Sbjct: 428 LLSDHF 433

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle|
            attachment abnormal protein 3)
          Length = 3767

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 386  CGAGEVQVHPQSPGRVGAVDCRPRHG 309
            CG G   ++PQSPG+     C P HG
Sbjct: 3203 CGVGYRDINPQSPGK----KCLPVHG 3224

>OXAA_BORPE (P65622) Inner membrane protein oxaA|
          Length = 563

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 213 ECSVALPFFILPLRALNLRRMLVAMRMHPKPP 308
           + SV  PFFILP  A+ +  M + ++++P PP
Sbjct: 476 DLSVRDPFFILP--AIMMATMFLQIKLNPTPP 505

>OXAA_BORPA (Q7W2K1) Inner membrane protein oxaA|
          Length = 563

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 213 ECSVALPFFILPLRALNLRRMLVAMRMHPKPP 308
           + SV  PFFILP  A+ +  M + ++++P PP
Sbjct: 476 DLSVRDPFFILP--AIMMATMFLQIKLNPTPP 505

>OXAA_BORBR (P65623) Inner membrane protein oxaA|
          Length = 563

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 213 ECSVALPFFILPLRALNLRRMLVAMRMHPKPP 308
           + SV  PFFILP  A+ +  M + ++++P PP
Sbjct: 476 DLSVRDPFFILP--AIMMATMFLQIKLNPTPP 505

>SYE_PARUW (Q6MEN1) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 502

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 340 SVQWTVGRDMGGGFGCIRMATNIRLKFNALNGKMKKGKA 224
           ++QW  G D+GG +G  R +    +        + KGKA
Sbjct: 65  NIQWDEGPDIGGAYGPYRQSERFDIYKQYAEELLSKGKA 103

>AN36_HELPJ (Q9ZJD1) 36 kDa antigen|
          Length = 329

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -1

Query: 334 QWTVGRDMGGGFGCIRMATNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKR 155
           ++ VG++  G    ++ +   R+K+ ++ G     KAT +S  Y   + ++   +   + 
Sbjct: 256 EFKVGKEFEGYIPALKRSAKFRVKYLSVMGDFATWKATNNSNTY--DMKSYEVEAIPLEE 313

Query: 154 LCNLRLAMS 128
           L N R+ MS
Sbjct: 314 LENFRVGMS 322

>FA47A_HUMAN (Q5JRC9) Protein FAM47A|
          Length = 778

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 301 SRRPCRGLQSTA--PTRPGDWGCTCTSPAPQGNP 396
           +R PC G + T   PT PG + C    P P   P
Sbjct: 276 ARAPCEGREKTTDEPTEPGKYPCGKFCPRPFETP 309

>KIFC2_HUMAN (Q96AC6) Kinesin-like protein KIFC2|
          Length = 838

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 24/90 (26%), Positives = 36/90 (40%)
 Frame = +1

Query: 91  PSSVLNPQDFTSWTWRDAGCRDASASTTSSSGCL*GDRSIGSARLPCPSSSCR*ER*IXX 270
           PSS  +P ++  W+W   G    +A + +  G L    S  + R P P +  R    +  
Sbjct: 747 PSS--SPTEWVKWSWGQPG----AAGSRAPPGRLLP--SAPTLRSPGPPAPLRRPLAVLH 798

Query: 271 XXXXXXXXTRSRRPCRGLQSTAPTRPGDWG 360
                    R  RP R   S+  +RP  WG
Sbjct: 799 APVPTTARARLSRPQRACPSSPGSRPCPWG 828

>SYH_LISMO (Q8Y708) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 280 TNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKRLCN--LRLAMSKK*NPVG 107
           TNI+L  N+L  K  + K  E    +  P  + +C+ C Q RL    LR+   KK +   
Sbjct: 158 TNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAEC-QVRLHKNPLRILDCKKDHDNP 216

Query: 106 LVQMMAS 86
           L+Q   S
Sbjct: 217 LIQSAPS 223

>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 280 TNIRLKFNALNGKMKKGKATEHSQCYGHPISNHYCSSCLQKRLCN--LRLAMSKK*NPVG 107
           TNI+L  N+L  K  + K  E    +  P  + +C+ C Q RL    LR+   KK +   
Sbjct: 158 TNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAEC-QVRLHKNPLRILDCKKDHDNP 216

Query: 106 LVQMMAS 86
           L+Q   S
Sbjct: 217 LIQSAPS 223

>NIR_SYNP7 (P39661) Ferredoxin--nitrite reductase (EC 1.7.7.1)|
          Length = 512

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 288 RMHPKPPPMSRPTVHCTDS 344
           R  P+P P+SR TV CT S
Sbjct: 381 RFSPQPAPLSRGTVSCTGS 399

>HTPG_WIGBR (Q8D228) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 638

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 64  LNIKHSITKPSSVLNPQDFTSWTWR 138
           + +K  ITK + +L P++  S+TW+
Sbjct: 209 IKLKTKITKDNKILTPEEKKSYTWK 233

>ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2967

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 122  VKSCGFSTDDGFVILCLMFNKCSGP 48
            + S G++ D+  + LCL F KCS P
Sbjct: 1031 LNSYGYARDERLLQLCLEFLKCSAP 1055

>YNT6_YEAST (P40167) Hypothetical 34.3 kDa protein in WHI3-CHS1 intergenic|
           region
          Length = 298

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 100 VLNPQDFTSWTWRDAGCRDASASTTSSS 183
           VL   +FTSW  R + C   S +TT SS
Sbjct: 176 VLQDMEFTSWERRWSNCSTTSNATTVSS 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,435,255
Number of Sequences: 219361
Number of extensions: 1093408
Number of successful extensions: 3259
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)