Clone Name | rbart33g03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full insert mRNA sequence Length = 1486 Score = 573 bits (289), Expect = e-160 Identities = 387/419 (92%), Gaps = 11/419 (2%) Strand = Plus / Minus Query: 16 ctaaatttattgaaatcctgccacagtggtcacagcaacaccatcaaactccaaaaggnn 75 ||||||||||| ||| ||| || |||||||||||||||||||||||||||||||| | Sbjct: 1425 ctaaatttattcgaattctgtcatagtggtcacagcaacaccatcaaactccaaaatgaa 1366 Query: 76 nnnnngaaatcgaatcacgtttctgagctaggaacta--ggaagcatcggcaggggaggg 133 |||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 1365 ------aaatcgaatcacacttctgagctaggaactataggaagcatcggcaggggaggg 1312 Query: 134 acaaacacaagatttacacgcgtagatagataatagaggaatcttcagatctttgtggcg 193 |||||||||| ||| |||||||| || ||||| |||||||||||||||||| |||||| Sbjct: 1311 acaaacacaacattaacacgcgtcgacagata---gaggaatcttcagatcttggtggcg 1255 Query: 194 aaatcaaggccttccttggcgagcgcctccacgtcggccaccggcggctgggccctggcg 253 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 aaatcaaggccttccttgccgagcgcctccacgtcggccaccggcggctgggccctggcg 1195 Query: 254 accttggcgatggcctgattctcgtcggcggagccgccctctaggaacacgccgatgacc 313 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1194 accttggcgatggcctgattctcgtcggcggagccgccctctaggaacacaccgatgacc 1135 Query: 314 ttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttgtcc 373 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 1134 ttgccgtccttgacccagtaggtgccgaacttgggcttggccaccgctgggtcgttgtcc 1075 Query: 374 ccgaacagcaccgtctcgccaacgttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1074 ccgaacagcaccgtctcgccaacgttctcgccgtagaactgccacgcgacatcgaacga 1016
>gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence Length = 933 Score = 537 bits (271), Expect = e-149 Identities = 310/321 (96%), Gaps = 4/321 (1%) Strand = Plus / Minus Query: 112 aggaagcatcggcaggggagggacaaacacaagatttacacgcgtagatagataatagag 171 ||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||| Sbjct: 789 aggaagcatcggcaggg-agggacaaacacaaaatttacacgcgtcgatagata---gag 734 Query: 172 gaatcttcagatctttgtggcgaaatcaaggccttccttggcgagcgcctccacgtcggc 231 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 733 gaatcttcagatcttggtggcgaaatcaaggccttccttgccgagcgcctccacgtcgtc 674 Query: 232 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 614 Query: 292 ctctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 351 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 ctctaggaacacaccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 554 Query: 352 ggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 411 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 ggccgccgctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 494 Query: 412 ctgccacgcgacgtcgaacga 432 ||||||||||||||||||||| Sbjct: 493 ctgccacgcgacgtcgaacga 473 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/95 (84%), Gaps = 6/95 (6%) Strand = Plus / Minus Query: 18 aaatttattgaaatcctgccacagtggtcacagcaacaccatcaaactccaaaaggnnnn 77 ||||||||| ||| |||||| |||||||||||||||||||||||||||||||| | Sbjct: 908 aaatttattcgaattctgccatagtggtcacagcaacaccatcaaactccaaaatgaa-- 851 Query: 78 nnngaaatcgaatcacgtttctgagctaggaacta 112 |||||||||||| ||||||||||||||||| Sbjct: 850 ----aaatcgaatcacacttctgagctaggaacta 820
>gb|AY107597.1| Zea mays PCO071961 mRNA sequence Length = 1745 Score = 244 bits (123), Expect = 2e-61 Identities = 197/219 (89%), Gaps = 2/219 (0%) Strand = Plus / Minus Query: 215 agcgcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattc 274 ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct: 1478 agcgcctggacgtcggccaccggcggctgcgccctggcgaccctggcgatggcctggttc 1419 Query: 275 tcgtcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtag 334 || ||||| || |||||||| || |||||||||| ||||||||||||||| ||||||||| Sbjct: 1418 tcctcggccgacccgccctcgagaaacacgccgacgaccttgccgtccttcacccagtag 1359 Query: 335 gtgccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtc-tcgcc 393 ||||||||||||||||||||| || ||||||||||| |||||||||| |||| ||||| Sbjct: 1358 ctgccgaacttgggcttggccgaggccgggtcgttgtcgccgaacagca-cgtcgtcgcc 1300 Query: 394 aacgttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||||||| | ||||||||| Sbjct: 1299 gacgttgtcgccgtagaactgccacgccaagtcgaacga 1261
>ref|XM_483751.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1721 Score = 236 bits (119), Expect = 5e-59 Identities = 191/215 (88%) Strand = Plus / Minus Query: 218 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 277 ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306 Query: 278 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 337 || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | | Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246 Query: 338 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 397 |||||||||||||||||||| | ||||||||||| ||||||||||| |||||| ||| Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186 Query: 398 ttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||| || ||||||||| Sbjct: 1185 ttgtcgccgtagaactgccacgagaggtcgaacga 1151
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 236 bits (119), Expect = 5e-59 Identities = 191/215 (88%) Strand = Plus / Minus Query: 218 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 277 ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| Sbjct: 27895523 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 27895464 Query: 278 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 337 || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | | Sbjct: 27895463 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 27895404 Query: 338 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 397 |||||||||||||||||||| | ||||||||||| ||||||||||| |||||| ||| Sbjct: 27895403 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 27895344 Query: 398 ttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||| || ||||||||| Sbjct: 27895343 ttgtcgccgtagaactgccacgagaggtcgaacga 27895309
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 236 bits (119), Expect = 5e-59 Identities = 191/215 (88%) Strand = Plus / Minus Query: 218 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 277 ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| Sbjct: 103601 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 103542 Query: 278 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 337 || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | | Sbjct: 103541 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 103482 Query: 338 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 397 |||||||||||||||||||| | ||||||||||| ||||||||||| |||||| ||| Sbjct: 103481 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 103422 Query: 398 ttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||| || ||||||||| Sbjct: 103421 ttgtcgccgtagaactgccacgagaggtcgaacga 103387
>dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094C01, full insert sequence Length = 1720 Score = 236 bits (119), Expect = 5e-59 Identities = 191/215 (88%) Strand = Plus / Minus Query: 218 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 277 ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306 Query: 278 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 337 || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | | Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246 Query: 338 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 397 |||||||||||||||||||| | ||||||||||| ||||||||||| |||||| ||| Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186 Query: 398 ttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||| || ||||||||| Sbjct: 1185 ttgtcgccgtagaactgccacgagaggtcgaacga 1151
>dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C10, full insert sequence Length = 694 Score = 236 bits (119), Expect = 5e-59 Identities = 191/215 (88%) Strand = Plus / Minus Query: 218 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 277 ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| Sbjct: 338 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 279 Query: 278 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 337 || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | | Sbjct: 278 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 219 Query: 338 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 397 |||||||||||||||||||| | ||||||||||| ||||||||||| |||||| ||| Sbjct: 218 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 159 Query: 398 ttgtcgccgtagaactgccacgcgacgtcgaacga 432 |||||||||||||||||||||| || ||||||||| Sbjct: 158 ttgtcgccgtagaactgccacgagaggtcgaacga 124
>dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for monodehydroascorbate reductase, partial cds Length = 1339 Score = 153 bits (77), Expect = 6e-34 Identities = 122/137 (89%) Strand = Plus / Minus Query: 296 aggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttggcc 355 ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||||||||| Sbjct: 1335 aggaagacgccgacgaccttgccgtccttgatccagtacgagccgaacttgggcttggcc 1276 Query: 356 gcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgc 415 || | ||||||||||| ||||||||||| |||||| ||||||||||||||||||||| Sbjct: 1275 gccgtggggtcgttgtcgccgaacagcacatcctcgccgacgttgtcgccgtagaactgc 1216 Query: 416 cacgcgacgtcgaacga 432 |||| || ||||||||| Sbjct: 1215 cacgagaggtcgaacga 1199
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 311 accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 370 |||||||||||||||| |||||||| ||||||||||||||||| | | ||||| || Sbjct: 22346963 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 22346904 Query: 371 tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 417 || |||||||| | || ||||||||||||||||||||||| ||||| Sbjct: 22346903 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 22346857
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1155_H10 Length = 140475 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 311 accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 370 |||||||||||||||| |||||||| ||||||||||||||||| | | ||||| || Sbjct: 108971 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 108912 Query: 371 tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 417 || |||||||| | || ||||||||||||||||||||||| ||||| Sbjct: 108911 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 108865
>dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100J06, full insert sequence Length = 1668 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 311 accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 370 |||||||||||||||| |||||||| ||||||||||||||||| | | ||||| || Sbjct: 1394 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1335 Query: 371 tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 417 || |||||||| | || ||||||||||||||||||||||| ||||| Sbjct: 1334 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 1288
>dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cytosolic monodehydroascorbate reductase, complete cds Length = 1570 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 311 accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 370 |||||||||||||||| |||||||| ||||||||||||||||| | | ||||| || Sbjct: 1272 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1213 Query: 371 tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 417 || |||||||| | || ||||||||||||||||||||||| ||||| Sbjct: 1212 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 1166
>gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site flanking region genomic sequence Length = 887 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 236 ggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccctct 295 ||||||||| |||| |||| |||||||||||| |||||||| | || |||||||| Sbjct: 654 ggcggctggtccctcgcgagcttggcgatggcgccgttctcgtccggcgacccgccctcc 595 Query: 296 aggaacacgccgatgaccttgccgtccttgacccagta 333 ||||||||||| | | ||||||||||||||||||||| Sbjct: 594 aggaacacgcccacgcacttgccgtccttgacccagta 557
>gb|AY103967.1| Zea mays PCO066827 mRNA sequence Length = 1675 Score = 67.9 bits (34), Expect = 3e-08 Identities = 159/198 (80%), Gaps = 2/198 (1%) Strand = Plus / Minus Query: 233 accggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccc 292 ||||||||||||| | || |||||||| ||| ||| |||||||| | || |||||| Sbjct: 1386 accggcggctgggttttcgccaccttggcaatgaccttgttctcgtccggtgacccgccc 1327 Query: 293 tctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttg 352 || ||||| |||| | ||||||||||||||| | |||||| | ||||||||||||||| Sbjct: 1326 tccaggaaggcgcccaagaccttgccgtccttaatccagtacgagccgaacttgggctt- 1268 Query: 353 gccgcagct-gggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 411 || | || | ||||| |||| || ||||| | || ||||| ||||||||||||||||| Sbjct: 1267 gctggaggtggggtcactgtcgccaaacaggatggtttcgcccacgttgtcgccgtagaa 1208 Query: 412 ctgccacgcgacgtcgaa 429 |||||||| | |||||| Sbjct: 1207 ttgccacgccaggtcgaa 1190
>gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene, promoter region and complete cds Length = 6026 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 380 agcaccgtctcgccaacgttgtcgccgtagaactgccacg 419 ||||| |||||||| || |||||||||||||||||||||| Sbjct: 5562 agcacagtctcgcccacattgtcgccgtagaactgccacg 5523
>ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 396 cgttgtcgccgtagaactgccacg 419 |||||||||||||||||||||||| Sbjct: 1084 cgttgtcgccgtagaactgccacg 1061
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence Length = 158050 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 396 cgttgtcgccgtagaactgccacg 419 |||||||||||||||||||||||| Sbjct: 116968 cgttgtcgccgtagaactgccacg 116945
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 396 cgttgtcgccgtagaactgccacg 419 |||||||||||||||||||||||| Sbjct: 29245663 cgttgtcgccgtagaactgccacg 29245686
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16 Length = 164373 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 396 cgttgtcgccgtagaactgccacg 419 |||||||||||||||||||||||| Sbjct: 43008 cgttgtcgccgtagaactgccacg 43031
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0680A05 Length = 168092 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 396 cgttgtcgccgtagaactgccacg 419 |||||||||||||||||||||||| Sbjct: 135631 cgttgtcgccgtagaactgccacg 135654
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 207 ccttggcgagcgcctccacgtcggcc 232 ||||||||| |||||||||||||||| Sbjct: 292100 ccttggcgaccgcctccacgtcggcc 292075
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 301 cacgccgatgaccttgccgtccttga 326 ||||||| |||||||||||||||||| Sbjct: 2805150 cacgccggtgaccttgccgtccttga 2805125 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgaccttgccgtccttgacc 328 |||||||||||||||||||| Sbjct: 4337179 tgaccttgccgtccttgacc 4337198
>gb|AY969674.1| Uncultured basidiomycete isolate dfmo0690_245 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 596 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 48 cagcaacaccatcaaactccaaaag 72 |||||||||| |||||||||||||| Sbjct: 419 cagcaacaccctcaaactccaaaag 395
>gb|AY969639.1| Uncultured basidiomycete isolate dfmo0690_209 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 596 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 48 cagcaacaccatcaaactccaaaag 72 |||||||||| |||||||||||||| Sbjct: 419 cagcaacaccctcaaactccaaaag 395
>gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequence Length = 537 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 caggggagggacaaacacaag 144 ||||||||||||||||||||| Sbjct: 194 caggggagggacaaacacaag 214
>gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 of the complete genome Length = 11021 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 228 cggccaccggcggctgggccctggcgacc 256 |||||||||||||||||||| || ||||| Sbjct: 9935 cggccaccggcggctgggccatgccgacc 9963
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 241 ctgggccctggcgaccttggcgatggcct 269 ||||||| |||| |||||||||||||||| Sbjct: 792531 ctgggccttggccaccttggcgatggcct 792559
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 gccgatgaccttgccgtcctt 324 ||||||||||||||||||||| Sbjct: 2512009 gccgatgaccttgccgtcctt 2512029
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 acccagtaggtgccgaacttg 346 ||||||||||||||||||||| Sbjct: 464124 acccagtaggtgccgaacttg 464144
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 241 ctgggccctggcgaccttggcgatggcct 269 ||||||| |||| |||||||||||||||| Sbjct: 463611 ctgggccttggccaccttggcgatggcct 463639
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 cacgccgatgaccttgccgtc 321 ||||||||||||||||||||| Sbjct: 532004 cacgccgatgaccttgccgtc 532024
>emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chromosome 2, complete sequence Length = 140953 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 ggcaggggagggacaaacaca 142 ||||||||||||||||||||| Sbjct: 127280 ggcaggggagggacaaacaca 127260
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tccacgtcggccaccggcgg 240 |||||||||||||||||||| Sbjct: 134504 tccacgtcggccaccggcgg 134485
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aacaccatcaaactccaaaa 71 |||||||||||||||||||| Sbjct: 2115717 aacaccatcaaactccaaaa 2115698
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acagcaacaccatcaaactc 66 |||||||||||||||||||| Sbjct: 6210867 acagcaacaccatcaaactc 6210848
>emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on chromosome 1 Contains a novel gene, the gene for tetraspan 1 (TSPAN-1), gene FLJ20277 (FLJ31624) and the gene for a novel protein (FLJ25163), complete sequence Length = 87234 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctgggccctggcgaccttgg 260 |||||||||||||||||||| Sbjct: 22909 ctgggccctggcgaccttgg 22928
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 caccggcggctgggccctgg 251 |||||||||||||||||||| Sbjct: 268675 caccggcggctgggccctgg 268694
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 caccggcggctgggccctgg 251 |||||||||||||||||||| Sbjct: 340349 caccggcggctgggccctgg 340368
>gb|AF411809.1| Lycopersicon esculentum BAC clone FW2.2, complete sequence Length = 127892 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 caaaaggccctaaatttattgaaa 30 |||| ||||||||||||||||||| Sbjct: 3622 caaacggccctaaatttattgaaa 3599
>gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, complete sequence Length = 96963 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gctgggccctggcgaccttg 259 |||||||||||||||||||| Sbjct: 84619 gctgggccctggcgaccttg 84600
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tgaccttgccgtccttgacc 328 |||||||||||||||||||| Sbjct: 3687086 tgaccttgccgtccttgacc 3687067
>dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for tegument protein, integral membrane protein, major capsid protein, capsid protein, DNA packaging protein, partial and complete cds, genotypes: BVlt Length = 7985 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ggcgagcgcctccacgtcggccac 234 ||||||||||||||||| |||||| Sbjct: 4291 ggcgagcgcctccacgtgggccac 4268
>dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for tegument protein, integral membrane protein, major capsid protein, capsid protein, DNA packaging protein, partial and complete cds, genotypes: BVpt Length = 7910 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ggcgagcgcctccacgtcggccac 234 ||||||||||||||||| |||||| Sbjct: 4299 ggcgagcgcctccacgtgggccac 4276
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cgatgaccttgccgtccttg 325 |||||||||||||||||||| Sbjct: 420412 cgatgaccttgccgtccttg 420431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,836,440 Number of Sequences: 3902068 Number of extensions: 2836440 Number of successful extensions: 63149 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62462 Number of HSP's gapped (non-prelim): 677 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)