Clone Name | rbart33f08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_190737.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 Score = 119 bits (60), Expect = 9e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 ||||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct: 924 ttacaactttgacttggggcggctcactgttgcttcaatggtcccgtgtggttcatcggt 865 Query: 437 cggcatgtacacatcatcagcaaacttcaccaatccaggattttcttt 484 ||||| |||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 864 cggcaggtacacatcatcagcaaacttcactaatcctggattttcttt 817
>dbj|AK071410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089L18, full insert sequence Length = 1259 Score = 119 bits (60), Expect = 9e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 ||||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct: 1036 ttacaactttgacttggggcggctcactgttgcttcaatggtcccgtgtggttcatcggt 977 Query: 437 cggcatgtacacatcatcagcaaacttcaccaatccaggattttcttt 484 ||||| |||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 976 cggcaggtacacatcatcagcaaacttcactaatcctggattttcttt 929
>gb|BT024144.1| Zea mays clone EL01N0441B12 mRNA sequence Length = 1312 Score = 95.6 bits (48), Expect = 1e-16 Identities = 81/92 (88%) Strand = Plus / Minus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 |||||||||||| ||| |||||||| |||||||||||||| || ||||| || || || Sbjct: 1034 ttacagctttgacatgggacggctcaaggttgcttcaatggtcccgtgtggttcgtccgt 975 Query: 437 cggcatgtacacatcatcagcaaacttcacca 468 ||||| |||||||||||||||||||||||||| Sbjct: 974 cggcaggtacacatcatcagcaaacttcacca 943
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 ||||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct: 37434159 ttacaactttgacttggggcggctcactgttgcttcaatggtcccgtgtggttcatcggt 37434218 Query: 437 cggcatgtacacatcatcagcaaact 462 ||||| |||||||||||||||||||| Sbjct: 37434219 cggcaggtacacatcatcagcaaact 37434244
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 ||||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct: 28696 ttacaactttgacttggggcggctcactgttgcttcaatggtcccgtgtggttcatcggt 28755 Query: 437 cggcatgtacacatcatcagcaaact 462 ||||| |||||||||||||||||||| Sbjct: 28756 cggcaggtacacatcatcagcaaact 28781
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 ||||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct: 146193 ttacaactttgacttggggcggctcactgttgcttcaatggtcccgtgtggttcatcggt 146252 Query: 437 cggcatgtacacatcatcagcaaact 462 ||||| |||||||||||||||||||| Sbjct: 146253 cggcaggtacacatcatcagcaaact 146278
>gb|BT016676.1| Zea mays clone Contig509 mRNA sequence Length = 1316 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 377 ttacagctttgagttggcgcggctcaacgttgcttcaatggttccatgtggctcatcagt 436 |||||||||||| ||| ||| |||| |||| ||||||||| || ||||| || || || Sbjct: 1015 ttacagctttgacatgggacgggtcaaggttgtttcaatggtcccgtgtggttcgtccgt 956 Query: 437 cggcatgtacacatcatcagcaaacttcacca 468 ||||| |||||||||||||||||||||||||| Sbjct: 955 cggcaggtacacatcatcagcaaacttcacca 924
>gb|AY104272.1| Zea mays PCO147921 mRNA sequence Length = 1402 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 ||||||||||| || || ||||| ||||| ||||||| |||||||||||||||||||||| Sbjct: 1002 gttgcttcaatcgtcccgtgtggttcatccgtcggcaggtacacatcatcagcaaacttc 943 Query: 465 acca 468 |||| Sbjct: 942 acca 939
>dbj|D86930.1| Glycine max mRNA for uricase (Nod-35), complete cds Length = 1120 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 893 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 847
>gb|M95400.1|SOYURICAS Soybean nodulin-35 mRNA, complete cds Length = 980 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 937 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 891
>gb|M87019.1|SOYOXIDORE Glycine max oxigen oxidoreductase (nodulin 35) mRNA sequence Length = 1219 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 921 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 875
>gb|M63743.1|SOYNODAA G.max nodulin-35 mRNA, complete cds Length = 980 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 937 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 891
>gb|L00353.1|SOYNOD35M Soybean nodulin-35 mRNA encoding a subunit of uricase II Length = 1120 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 896 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 850
>dbj|D86929.1| Glycine max mRNA for uricase, complete cds Length = 1170 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 892 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 846
>dbj|AB002810.1| Glycine max mRNA for nodulin 35, complete cds Length = 1339 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 |||||||||||||| || |||| |||||||||||| |||||||||| Sbjct: 928 ccatgtggctcatccgttggcaagtacacatcatcctcaaacttcac 882
>dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds Length = 1220 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 420 ccatgtggctcatcagtcggcatgtacacatcatcagcaaacttcac 466 ||||| |||||||| || |||| |||||||||||| |||||||||| Sbjct: 927 ccatgaggctcatccgttggcaagtacacatcatcctcaaacttcac 881
>gb|AC124433.4| Mus musculus BAC clone RP24-248P14 from chromosome 13, complete sequence Length = 169876 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 247 ttttcccccctattactttgtttatt 272 |||||||||| ||||||||||||||| Sbjct: 99070 ttttcccccccattactttgtttatt 99095
>gb|AC101221.11| Mus musculus chromosome 13, clone RP23-96E4, complete sequence Length = 258193 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 247 ttttcccccctattactttgtttatt 272 |||||||||| ||||||||||||||| Sbjct: 29118 ttttcccccccattactttgtttatt 29093
>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete sequence Length = 209915 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 345 tttcctcaggggaaaaggcaaagaaa 370 ||||| |||||||||||||||||||| Sbjct: 16590 tttccccaggggaaaaggcaaagaaa 16565
>gb|AC165088.5| Mus musculus BAC clone RP23-147K12 from chromosome 5, complete sequence Length = 220877 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 gggaaaaggcaaagaaaagga 374 ||||||||||||||||||||| Sbjct: 83568 gggaaaaggcaaagaaaagga 83588
>ref|XM_523141.1| PREDICTED: Pan troglodytes similar to a disintegrin-like and metalloprotease domain with thrombospondin type I motifs-like 3; punctin-2 (LOC467746), mRNA Length = 5661 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ctccctcaatttcatttaata 50 ||||||||||||||||||||| Sbjct: 4127 ctccctcaatttcatttaata 4147
>ref|NM_207517.1| Homo sapiens ADAMTS-like 3 (ADAMTSL3), mRNA Length = 7333 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ctccctcaatttcatttaata 50 ||||||||||||||||||||| Sbjct: 3778 ctccctcaatttcatttaata 3798
>gb|AC108827.10| Mus musculus chromosome 7, clone RP23-147O14, complete sequence Length = 220823 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 gggaaaaggcaaagaaaagga 374 ||||||||||||||||||||| Sbjct: 83568 gggaaaaggcaaagaaaagga 83588
>gb|AC123924.4| Mus musculus BAC clone RP24-292A3 from chromosome 16, complete sequence Length = 159639 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 347 tcctcaggggaaaaggcaaagaaaaggaa 375 ||||||| |||||||||||| |||||||| Sbjct: 137326 tcctcagaggaaaaggcaaaaaaaaggaa 137354
>gb|AC004909.2| Homo sapiens PAC clone RP5-856O24 from 7, complete sequence Length = 132050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 aaaaggcaaagaaaaggaaat 377 ||||||||||||||||||||| Sbjct: 118292 aaaaggcaaagaaaaggaaat 118312
>gb|AC009800.13| Homo sapiens chromosome 8, clone RP11-182E14, complete sequence Length = 167249 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 gggaaaaggcaaagaaaagga 374 ||||||||||||||||||||| Sbjct: 78453 gggaaaaggcaaagaaaagga 78433
>gb|AC112656.4| Homo sapiens X BAC RP11-555H23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 attttcccttttgcaaaggtt 236 ||||||||||||||||||||| Sbjct: 97918 attttcccttttgcaaaggtt 97898
>gb|AC087348.6| Homo sapiens chromosome 8, clone RP11-333H13, complete sequence Length = 173380 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 gggaaaaggcaaagaaaagga 374 ||||||||||||||||||||| Sbjct: 31772 gggaaaaggcaaagaaaagga 31792
>gb|AC027807.6| Homo sapiens chromosome 15, clone RP11-342A23, complete sequence Length = 181327 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 ctccctcaatttcatttaata 50 ||||||||||||||||||||| Sbjct: 103331 ctccctcaatttcatttaata 103311
>gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete sequence Length = 164879 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 ctccctcaatttcatttaata 50 ||||||||||||||||||||| Sbjct: 32920 ctccctcaatttcatttaata 32900
>dbj|AB072736.1| Macaca fascicularis testis cDNA clone:QtsA-14120, similar to human a disintegrin-like and metalloprotease domain (ADAMTSL3), mRNA, NM_207517 Length = 4614 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ctccctcaatttcatttaata 50 ||||||||||||||||||||| Sbjct: 1030 ctccctcaatttcatttaata 1050
>gb|AC064826.6| Homo sapiens BAC clone RP11-176L20 from 2, complete sequence Length = 136814 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 ggaaaaggcaaagaaaaggaa 375 ||||||||||||||||||||| Sbjct: 63940 ggaaaaggcaaagaaaaggaa 63920
>dbj|AB028150.1| Medicago sativa MsU9 mRNA for uricase (Nod-35), complete cds Length = 1303 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Minus Query: 395 gcggctcaacgttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatc 454 ||||||||| | |||||||| | |||||||||||||| || |||| |||||||| || Sbjct: 928 gcggctcaaactagcttcaattgaaccatgtggctcatccgttggcagatacacatcgtc 869 Query: 455 agcaaactt 463 | ||||||| Sbjct: 868 atcaaactt 860
>dbj|AB033059.1| Homo sapiens mRNA for KIAA1233 protein, partial cds Length = 5107 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ctccctcaatttcatttaata 50 ||||||||||||||||||||| Sbjct: 1552 ctccctcaatttcatttaata 1572
>ref|NM_128180.3| Arabidopsis thaliana urate oxidase AT2G26230 mRNA, complete cds Length = 1334 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 1084 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 1025 Query: 465 acca 468 |||| Sbjct: 1024 acca 1021
>gb|AC158794.4| Mus musculus chromosome 1, clone RP23-306I10, complete sequence Length = 239904 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ggggattttgaacttgaaga 292 |||||||||||||||||||| Sbjct: 142113 ggggattttgaacttgaaga 142132
>gb|AC162914.2| Mus musculus BAC clone RP23-401O13 from chromosome 6, complete sequence Length = 194892 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggattttgaacttgaagaag 294 |||||||||||||||||||| Sbjct: 61584 ggattttgaacttgaagaag 61565
>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence Length = 230218 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggattttgaacttgaagaag 294 |||||||||||||||||||| Sbjct: 78071 ggattttgaacttgaagaag 78090
>gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete sequence Length = 233153 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 aatagaaaccatattacattgaag 70 ||||||||||||||||| |||||| Sbjct: 194626 aatagaaaccatattactttgaag 194649
>emb|AL356962.8| Human DNA sequence from clone RP11-453C2 on chromosome 6 Contains the 5' end of the IMPG1 gene for interphotoreceptor matrix proteoglycan 1, complete sequence Length = 186301 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tacatcattttcccttttgc 229 |||||||||||||||||||| Sbjct: 39278 tacatcattttcccttttgc 39297
>emb|AL136224.24| Human DNA sequence from clone RP1-305A19 on chromosome 6 Contains the 3' end of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 70540 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 gaaaaggcaaagaaaaggaa 375 |||||||||||||||||||| Sbjct: 35087 gaaaaggcaaagaaaaggaa 35106
>gb|AC099536.3| Homo sapiens chromosome 3 clone RP11-27C2, complete sequence Length = 170561 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtctccctcaatttcattta 47 |||||||||||||||||||| Sbjct: 9281 gtctccctcaatttcattta 9262
>emb|Z92974.1|TTBCSOPRN T.thermosaccharolyticum BCS operon DNA Length = 8395 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gattaaacagcagacatgtg 157 |||||||||||||||||||| Sbjct: 2883 gattaaacagcagacatgtg 2902
>emb|Z82038.1|CTZ82038 C.thermosaccharolyticum etfB, etfA, hbd, thlA and actA genes Length = 6202 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gattaaacagcagacatgtg 157 |||||||||||||||||||| Sbjct: 690 gattaaacagcagacatgtg 709
>emb|Y11120.1|ATNOD35 A.thaliana mRNA for nodulin-35 homologue Length = 1178 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 947 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 888 Query: 465 acca 468 |||| Sbjct: 887 acca 884
>gb|AC098594.2| Homo sapiens chromosome 4 clone RP11-465C6, complete sequence Length = 168860 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ggaaaaggcaaagaaaagga 374 |||||||||||||||||||| Sbjct: 121050 ggaaaaggcaaagaaaagga 121069
>gb|AC100271.6| Mus musculus, clone RP23-77E14, complete sequence Length = 210574 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ggggattttgaacttgaaga 292 |||||||||||||||||||| Sbjct: 164668 ggggattttgaacttgaaga 164649
>emb|CR352283.6| Zebrafish DNA sequence from clone CH211-105M14 in linkage group 12, complete sequence Length = 161750 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctattactttgtttattggg 275 |||||||||||||||||||| Sbjct: 44003 ctattactttgtttattggg 43984
>emb|AL929181.2| Mouse DNA sequence from clone RP23-391E20 on chromosome 4 Contains a malate dehydrogenase, mitochondrial (Mor1) pseudogene and the 3' end of the Ptprd gene for protein tyrosine phosphatase receptor type D, complete sequence Length = 126280 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgattgttaattacagtttt 346 |||||||||||||||||||| Sbjct: 1574 tgattgttaattacagtttt 1593
>emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chromosome 4 Contains a ribosomal protein 7a (Rpl7a) pseudogene, complete sequence Length = 161600 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgattgttaattacagtttt 346 |||||||||||||||||||| Sbjct: 161174 tgattgttaattacagtttt 161193
>gb|AC100873.2| Homo sapiens chromosome 8, clone RP11-978P4, complete sequence Length = 153581 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaaaaggcaaagaaaagga 374 |||||||||||||||||||| Sbjct: 115295 ggaaaaggcaaagaaaagga 115276
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tttcatttaatagaaaccat 58 |||||||||||||||||||| Sbjct: 3337837 tttcatttaatagaaaccat 3337856
>emb|BX510925.7| Zebrafish DNA sequence from clone CH211-278B8 in linkage group 5, complete sequence Length = 75254 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttaattacagtttttcctca 352 |||||||||||||||||||| Sbjct: 19110 ttaattacagtttttcctca 19091
>gb|AY101530.1| Arabidopsis thaliana At2g26230/T1D16.13 mRNA, complete cds Length = 930 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 902 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 843 Query: 465 acca 468 |||| Sbjct: 842 acca 839
>gb|AC111149.4| Homo sapiens chromosome 8, clone RP11-434I12, complete sequence Length = 135213 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaaaaggcaaagaaaagga 374 |||||||||||||||||||| Sbjct: 105760 ggaaaaggcaaagaaaagga 105741
>gb|AF439711.1|AF439711 Homo sapiens NOGO-interacting mitochondrial protein short isoform mRNA, complete cds, alternatively spliced; nuclear gene for mitochondrial product Length = 814 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 gttaattacagtttttcctc 351 |||||||||||||||||||| Sbjct: 812 gttaattacagtttttcctc 793
>gb|AY050318.1| Arabidopsis thaliana At2g26230/T1D16.13 mRNA, complete cds Length = 1253 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 1002 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 943 Query: 465 acca 468 |||| Sbjct: 942 acca 939
>emb|BX465198.11| Zebrafish DNA sequence from clone DKEYP-84E12 in linkage group 12, complete sequence Length = 194152 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctattactttgtttattggg 275 |||||||||||||||||||| Sbjct: 182578 ctattactttgtttattggg 182559
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaggcaaagaaaaggaaa 376 |||||||||||||||||||| Sbjct: 21461289 aaaaggcaaagaaaaggaaa 21461270
>emb|BX818975.1|CNS0A8XU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZA02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1211 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 1027 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 968 Query: 465 acca 468 |||| Sbjct: 967 acca 964
>emb|BX820493.1|CNS0A8LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH40ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1324 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 1084 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 1025 Query: 465 acca 468 |||| Sbjct: 1024 acca 1021
>gb|AC105926.5| Homo sapiens BAC clone RP11-801F10 from 2, complete sequence Length = 93438 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ctccctcaatttcatttaat 49 |||||||||||||||||||| Sbjct: 10792 ctccctcaatttcatttaat 10773
>gb|AC153817.6| Mus musculus BAC RP23-11P24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 247508 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tgaacacatgcaaagcttac 212 |||||||||||||||||||| Sbjct: 3156 tgaacacatgcaaagcttac 3175
>gb|AC007563.2| Homo sapiens BAC clone RP11-506C8 from 2, complete sequence Length = 179859 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaaaaggcaaagaaaagga 374 |||||||||||||||||||| Sbjct: 87193 ggaaaaggcaaagaaaagga 87174
>gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, complete sequence Length = 200622 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaaaaggcaaagaaaagga 374 |||||||||||||||||||| Sbjct: 43244 ggaaaaggcaaagaaaagga 43225
>gb|AY087805.1| Arabidopsis thaliana clone 38538 mRNA, complete sequence Length = 1291 Score = 40.1 bits (20), Expect = 6.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 405 gttgcttcaatggttccatgtggctcatcagtcggcatgtacacatcatcagcaaacttc 464 |||||||| || | |||||| || ||||| || |||| |||||||||||| ||||||| Sbjct: 1052 gttgcttctatagatccatgaggttcatcggttggcaggtacacatcatctttaaacttc 993 Query: 465 acca 468 |||| Sbjct: 992 acca 989
>gb|AF254136.3| Homo sapiens chromosome 8 clone RP11-386F22, RP11-820H12 map q24.2, complete sequence Length = 184865 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaaaaggcaaagaaaagga 374 |||||||||||||||||||| Sbjct: 106147 ggaaaaggcaaagaaaagga 106128
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaggcaaagaaaaggaaa 376 |||||||||||||||||||| Sbjct: 56216 aaaaggcaaagaaaaggaaa 56197
>gb|AC155915.2| Mus musculus 6 BAC RP24-462N21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152279 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tgaacacatgcaaagcttac 212 |||||||||||||||||||| Sbjct: 48596 tgaacacatgcaaagcttac 48577
>gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014H8 and RP11-285P21 map 14q24.3, complete sequence Length = 163312 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 ggaaaaggcaaagaaaaggaaatt 378 |||||||| ||||||||||||||| Sbjct: 141983 ggaaaaggaaaagaaaaggaaatt 142006
>gb|AC126275.3| Mus musculus BAC clone RP23-111N17 from 14, complete sequence Length = 211542 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 aaaggcaaagaaaaggaaat 377 |||||||||||||||||||| Sbjct: 181280 aaaggcaaagaaaaggaaat 181299
>gb|AC140442.4| Mus musculus BAC clone RP24-106P1 from 12, complete sequence Length = 153574 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cttttcccccctattacttt 265 |||||||||||||||||||| Sbjct: 30849 cttttcccccctattacttt 30868
>gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence Length = 246546 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtctccctcaatttcattta 47 |||||||||||||||||||| Sbjct: 240331 gtctccctcaatttcattta 240312
>emb|AL162551.4|CNS01RHW Human chromosome 14 DNA sequence BAC R-479H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 182960 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaggcaaagaaaaggaaa 376 |||||||||||||||||||| Sbjct: 73872 aaaaggcaaagaaaaggaaa 73853
>emb|AL121576.5|CNS01DRW Human chromosome 14 DNA sequence BAC R-476J6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 221004 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaggcaaagaaaaggaaa 376 |||||||||||||||||||| Sbjct: 33346 aaaaggcaaagaaaaggaaa 33327
>gb|AF099810.1|AF099810 Homo sapiens neurexin III-alpha gene, partial cds Length = 193824 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 ggaaaaggcaaagaaaaggaaatt 378 |||||||| ||||||||||||||| Sbjct: 4304 ggaaaaggaaaagaaaaggaaatt 4327
>gb|AC004049.1|AC004049 Homo sapiens chromosome 4 clone B203C23 map 4q25, complete sequence Length = 173766 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gggaaaaggcaaagaaaagg 373 |||||||||||||||||||| Sbjct: 109746 gggaaaaggcaaagaaaagg 109727
>emb|AL929395.8| Mouse DNA sequence from clone RP23-263P13 on chromosome 2, complete sequence Length = 121993 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aggggaaaaggcaaagaaaa 371 |||||||||||||||||||| Sbjct: 67958 aggggaaaaggcaaagaaaa 67977
>gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complete sequence Length = 233804 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 aaaggcaaagaaaaggaaat 377 |||||||||||||||||||| Sbjct: 233544 aaaggcaaagaaaaggaaat 233525
>gb|AC154344.1| Mus musculus BAC clone RP23-226G16 from 16, complete sequence Length = 171340 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 gaaaaggcaaagaaaaggaa 375 |||||||||||||||||||| Sbjct: 85958 gaaaaggcaaagaaaaggaa 85977
>gb|AC131184.4| Mus musculus BAC clone RP23-347G20 from 3, complete sequence Length = 203243 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 caaagaaaaggaaattacag 382 |||||||||||||||||||| Sbjct: 132560 caaagaaaaggaaattacag 132541
>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence Length = 235086 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cttttcccccctattacttt 265 |||||||||||||||||||| Sbjct: 199646 cttttcccccctattacttt 199665
>emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chromosome 2, complete sequence Length = 167978 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 ggggaaaaggcaaagaaaaggaaa 376 |||||||||| ||||||||||||| Sbjct: 124198 ggggaaaagggaaagaaaaggaaa 124175
>gb|AC112493.2| Homo sapiens X BAC RP11-2M5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164480 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tgtttattggggattttgaa 284 |||||||||||||||||||| Sbjct: 143667 tgtttattggggattttgaa 143686
>dbj|D49516.1| American cockroach clone PL21 mRNA for lectin-related protein, partial cds Length = 1474 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 atttcatttaatagaaaccatatt 61 ||||||||||||| |||||||||| Sbjct: 1429 atttcatttaataaaaaccatatt 1452
>dbj|AB020864.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 7/11 Length = 100000 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 acttttcccccctattactttgtt 268 ||||||||||||||||| |||||| Sbjct: 52975 acttttcccccctattaatttgtt 52998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,385,816 Number of Sequences: 3902068 Number of extensions: 5385816 Number of successful extensions: 116607 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116354 Number of HSP's gapped (non-prelim): 253 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)