ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2 29 2.9
2GSCR2_DROME (Q9W3C2) Hypothetical protein CG1785 29 3.8

>CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2|
          Length = 306

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 40  LDCNWT*KFAEDRRNMRNVGSFQPDQSRALFIIN 141
           LDC    K AE+R +M  VGSF   Q+R L++ N
Sbjct: 107 LDCFGREKHAENREDMAGVGSFN-QQNRTLYVGN 139



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>GSCR2_DROME (Q9W3C2) Hypothetical protein CG1785|
          Length = 478

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 61  KFAEDRRNMRNVGSFQPDQSRALFIINSS 147
           +F ED+R    VG+F   Q   LF+++SS
Sbjct: 31  QFLEDQRQEERVGTFADKQDEDLFVVDSS 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,774,558
Number of Sequences: 219361
Number of extensions: 425610
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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