ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
2dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
3dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
4gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 176 5e-41
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 176 5e-41
6dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
7dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
8ref|NM_190018.1| Oryza sativa (japonica cultivar-group), predic... 64 5e-07
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
10dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
11dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
12dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
13dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
14gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 48 0.028
15gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 48 0.028
16ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glyc... 48 0.028
17gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochon... 44 0.44
18gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial... 44 0.44
19ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
20emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
21emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23gb|AC092652.2| Homo sapiens BAC clone RP11-434H14 from 2, comple... 42 1.7
24dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
25dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
26gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosom... 40 6.8
27ref|XM_463507.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
28gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, co... 40 6.8
29gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, co... 40 6.8
30gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 con... 40 6.8
31gb|AC121971.3| Mus musculus BAC clone RP24-275H22 from chromosom... 40 6.8
32emb|AL445187.7| Human DNA sequence from clone RP11-576C12 on chr... 40 6.8
33gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, com... 40 6.8
34gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.8
35dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
37ref|XM_624067.1| PREDICTED: Apis mellifera similar to CG8331-PA ... 40 6.8
38gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, compl... 40 6.8
39gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, comp... 40 6.8
40gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 6.8
41dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
42dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
43dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
44dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
45dbj|AP005526.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
46dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
47dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
48dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 6.8
49dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
50gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 40 6.8
51dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
52emb|AL132949.2|CEY53F4B Caenorhabditis elegans YAC Y53F4B, compl... 40 6.8
53emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 6.8
54gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome... 40 6.8
55gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 gen... 40 6.8
56gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 gen... 40 6.8
57dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8 
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
            insert sequence
          Length = 2096

 Score =  230 bits (116), Expect = 4e-57
 Identities = 215/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1762 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1703

                                                                        
Query: 310  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
            |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 1702 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1643

                                                                        
Query: 370  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
            | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1642 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1583

                                                                        
Query: 430  cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 489
            |||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |
Sbjct: 1582 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1523

                    
Query: 490  cgtcgtcg 497
            ||||||||
Sbjct: 1522 cgtcgtcg 1515
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>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
            insert sequence
          Length = 2059

 Score =  230 bits (116), Expect = 4e-57
 Identities = 215/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1719 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1660

                                                                        
Query: 310  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
            |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 1659 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1600

                                                                        
Query: 370  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
            | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1599 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1540

                                                                        
Query: 430  cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 489
            |||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |
Sbjct: 1539 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1480

                    
Query: 490  cgtcgtcg 497
            ||||||||
Sbjct: 1479 cgtcgtcg 1472
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>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
            insert sequence
          Length = 1993

 Score =  230 bits (116), Expect = 4e-57
 Identities = 215/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1653 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1594

                                                                        
Query: 310  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
            |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 1593 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1534

                                                                        
Query: 370  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
            | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1533 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1474

                                                                        
Query: 430  cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 489
            |||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |
Sbjct: 1473 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1414

                    
Query: 490  cgtcgtcg 497
            ||||||||
Sbjct: 1413 cgtcgtcg 1406
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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score =  176 bits (89), Expect = 5e-41
 Identities = 164/189 (86%)
 Strand = Plus / Plus

                                                                         
Query: 250   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
             |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 71059 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 71118

                                                                         
Query: 310   acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
             |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 71119 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 71178

                                                                         
Query: 370   caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
             | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 71179 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 71238

                      
Query: 430   cgttcctgc 438
             |||||||||
Sbjct: 71239 cgttcctgc 71247



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 152/189 (80%)
 Strand = Plus / Plus

                                                                         
Query: 250   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
             |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 97155 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 97214

                                                                         
Query: 310   acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
             ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 97215 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 97274

                                                                         
Query: 370   caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
             |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 97275 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 97334

                      
Query: 430   cgttcctgc 438
             |||||||||
Sbjct: 97335 cgttcctgc 97343



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                         
Query: 434   cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 493
             |||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |||||
Sbjct: 71497 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 71556

                 
Query: 494   gtcg 497
             ||||
Sbjct: 71557 gtcg 71560



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 398   tgaccacacgaagtagccctgcacgttcgacccgttcctgc 438
             ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 89265 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 89305
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  176 bits (89), Expect = 5e-41
 Identities = 164/189 (86%)
 Strand = Plus / Plus

                                                                            
Query: 250      ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
                |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 19587984 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 19588043

                                                                            
Query: 310      acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
                |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 19588044 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 19588103

                                                                            
Query: 370      caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
                | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 19588104 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 19588163

                         
Query: 430      cgttcctgc 438
                |||||||||
Sbjct: 19588164 cgttcctgc 19588172



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 152/189 (80%)
 Strand = Plus / Plus

                                                                            
Query: 250      ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
                |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 19614080 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 19614139

                                                                            
Query: 310      acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
                ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 19614140 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 19614199

                                                                            
Query: 370      caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
                |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 19614200 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 19614259

                         
Query: 430      cgttcctgc 438
                |||||||||
Sbjct: 19614260 cgttcctgc 19614268



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                            
Query: 434      cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 493
                |||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |||||
Sbjct: 19588422 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 19588481

                    
Query: 494      gtcg 497
                ||||
Sbjct: 19588482 gtcg 19588485



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 398      tgaccacacgaagtagccctgcacgttcgacccgttcctgc 438
                ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 19606190 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 19606230



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 9       aaatatattaatattttcagcaca 32
               ||||||||||||||||||| ||||
Sbjct: 2316963 aaatatattaatattttcaacaca 2316986
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>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 152/189 (80%)
 Strand = Plus / Plus

                                                                         
Query: 250   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
             |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 23562 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 23621

                                                                         
Query: 310   acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
             ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 23622 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 23681

                                                                         
Query: 370   caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
             |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 23682 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 23741

                      
Query: 430   cgttcctgc 438
             |||||||||
Sbjct: 23742 cgttcctgc 23750



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 398   tgaccacacgaagtagccctgcacgttcgacccgttcctgc 438
             ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 15672 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 15712
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>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full
            insert sequence
          Length = 1919

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 149/186 (80%)
 Strand = Plus / Minus

                                                                        
Query: 250  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 309
            |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 1504 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 1445

                                                                        
Query: 310  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 369
            ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 1444 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 1385

                                                                        
Query: 370  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 429
            |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 1384 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 1325

                  
Query: 430  cgttcc 435
            ||||||
Sbjct: 1324 cgttcc 1319
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>ref|NM_190018.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 381  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 424
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1178 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1135
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 381      tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 424
                ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 40840163 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 40840120



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 262      cgccgccacggaggaagccg 281
                ||||||||||||||||||||
Sbjct: 37943132 cgccgccacggaggaagccg 37943151



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      aaatatattaatattttcagcaca 32
              ||||||||||||||||||| ||||
Sbjct: 335658 aaatatattaatattttcaacaca 335681
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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                          
Query: 381    tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 424
              ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 142809 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 142766
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>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 381   tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 424
             ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 52269 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 52226
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>dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H04, full
            insert sequence
          Length = 1750

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 381  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 424
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1363 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1320
to top
>dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054O08, full
            insert sequence
          Length = 1906

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 381  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 424
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1362 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1319
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 65      aacaatcgactccaaagaagcaga 88
               ||||||||||||||||||||||||
Sbjct: 1522793 aacaatcgactccaaagaagcaga 1522770
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>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 65    aacaatcgactccaaagaagcaga 88
             ||||||||||||||||||||||||
Sbjct: 73421 aacaatcgactccaaagaagcaga 73398
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>ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb09.354.0090) partial mRNA
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 65   aacaatcgactccaaagaagcaga 88
            ||||||||||||||||||||||||
Sbjct: 1140 aacaatcgactccaaagaagcaga 1163
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>gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochondrial control region,
           partial sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 128 ccaaaaacaagaaccaatcatc 149
           ||||||||||||||||||||||
Sbjct: 108 ccaaaaacaagaaccaatcatc 87
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>gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial control region, partial
           sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 128 ccaaaaacaagaaccaatcatc 149
           ||||||||||||||||||||||
Sbjct: 107 ccaaaaacaagaaccaatcatc 86
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>ref|XM_473160.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 388  tgtccacgaatgaccacacgaagtagccc 416
            ||||||||| ||||||| |||||||||||
Sbjct: 1384 tgtccacgattgaccacgcgaagtagccc 1356
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>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
             complete sequence
          Length = 130718

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 388   tgtccacgaatgaccacacgaagtagccc 416
             ||||||||| ||||||| |||||||||||
Sbjct: 19720 tgtccacgattgaccacgcgaagtagccc 19692
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
              complete sequence
          Length = 158601

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 388    tgtccacgaatgaccacacgaagtagccc 416
              ||||||||| ||||||| |||||||||||
Sbjct: 126191 tgtccacgattgaccacgcgaagtagccc 126163
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 388      tgtccacgaatgaccacacgaagtagccc 416
                ||||||||| ||||||| |||||||||||
Sbjct: 25639993 tgtccacgattgaccacgcgaagtagccc 25639965
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>gb|AC092652.2| Homo sapiens BAC clone RP11-434H14 from 2, complete sequence
          Length = 161975

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     aatatattaatattttcagca 30
              |||||||||||||||||||||
Sbjct: 127593 aatatattaatattttcagca 127613
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>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full
            insert sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 388  tgtccacgaatgaccacacgaagtagccc 416
            ||||||||| ||||||| |||||||||||
Sbjct: 1333 tgtccacgattgaccacgcgaagtagccc 1305
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>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full
            insert sequence
          Length = 2770

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 388  tgtccacgaatgaccacacgaagtagccc 416
            ||||||||| ||||||| |||||||||||
Sbjct: 2672 tgtccacgattgaccacgcgaagtagccc 2644
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>gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosome 7, complete sequence
          Length = 199480

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    aaattgaactcccatccaaa 132
              ||||||||||||||||||||
Sbjct: 145463 aaattgaactcccatccaaa 145482
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>ref|XM_463507.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 262 cgccgccacggaggaagccg 281
           ||||||||||||||||||||
Sbjct: 744 cgccgccacggaggaagccg 763
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>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence
          Length = 170539

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaagaagcagatgtataaat 97
              ||||||||||||||||||||
Sbjct: 170337 aaagaagcagatgtataaat 170356
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>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence
          Length = 188060

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaagaagcagatgtataaat 97
             ||||||||||||||||||||
Sbjct: 88002 aaagaagcagatgtataaat 88021
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>gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 contig A, partial
             sequence
          Length = 55981

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   gaggaattcgaacatgtcca 393
             ||||||||||||||||||||
Sbjct: 34304 gaggaattcgaacatgtcca 34323
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>gb|AC121971.3| Mus musculus BAC clone RP24-275H22 from chromosome 7, complete sequence
          Length = 195611

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aaatatattaatattttcag 28
             ||||||||||||||||||||
Sbjct: 98502 aaatatattaatattttcag 98483
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>emb|AL445187.7| Human DNA sequence from clone RP11-576C12 on chromosome 9 Contains a
             vacuolar protein sorting 33B (VPS33B) pseudogene and part
             of a novel gene, complete sequence
          Length = 76114

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atatattaatattttcagca 30
             ||||||||||||||||||||
Sbjct: 57146 atatattaatattttcagca 57165
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>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      gaaatatattaatattttca 27
              ||||||||||||||||||||
Sbjct: 157565 gaaatatattaatattttca 157546
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    gccgaagcccatgcggtagc 369
              ||||||||||||||||||||
Sbjct: 449378 gccgaagcccatgcggtagc 449359
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 9       aaatatattaatattttcagcaca 32
               ||||||||||||||||||| ||||
Sbjct: 2607570 aaatatattaatattttcaacaca 2607593
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 9        aaatatattaatattttcagcaca 32
                ||||||| ||||||||||||||||
Sbjct: 15981301 aaatataataatattttcagcaca 15981324



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 9       aaatatattaatattttcagcaca 32
               ||||||| ||||||||||||||||
Sbjct: 3855233 aaatataataatattttcagcaca 3855256
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>ref|XM_624067.1| PREDICTED: Apis mellifera similar to CG8331-PA (LOC551678), mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 13   atattaatattttcagcacataca 36
            ||||||||||||||||||| ||||
Sbjct: 1130 atattaatattttcagcacttaca 1153
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>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence
          Length = 122770

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    aaaaacaagaaccaatcatc 149
              ||||||||||||||||||||
Sbjct: 101675 aaaaacaagaaccaatcatc 101656
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>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      gaaatatattaatattttca 27
              ||||||||||||||||||||
Sbjct: 112849 gaaatatattaatattttca 112868
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 335   gtcgacgccatagaggccgaagcc 358
             ||||||||||| ||||||||||||
Sbjct: 43446 gtcgacgccatggaggccgaagcc 43423
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   cgccgccacggaggaagccg 281
             ||||||||||||||||||||
Sbjct: 24076 cgccgccacggaggaagccg 24095
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     aaatatattaatattttcagcaca 32
             ||||||| ||||||||||||||||
Sbjct: 94345 aaatataataatattttcagcaca 94368
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>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      aaatatattaatattttcagcaca 32
              ||||||||||||||||||| ||||
Sbjct: 178801 aaatatattaatattttcaacaca 178824
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0005A05
          Length = 190834

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     aaatatattaatattttcagcaca 32
             ||||||||||||||||||| ||||
Sbjct: 87496 aaatatattaatattttcaacaca 87519
to top
>dbj|AP005526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0571B09
          Length = 147382

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      aaatatattaatattttcagcaca 32
              ||||||||||||||||||| ||||
Sbjct: 121927 aaatatattaatattttcaacaca 121950
to top
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0040K22
          Length = 155832

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     aaatatattaatattttcagcaca 32
             ||||||| ||||||||||||||||
Sbjct: 62703 aaatataataatattttcagcaca 62726
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>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0433B06
          Length = 126258

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     aaatatattaatattttcagcaca 32
             ||||||||||||||||||| ||||
Sbjct: 56002 aaatatattaatattttcaacaca 56025
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     atgaacatttataatgtata 61
              ||||||||||||||||||||
Sbjct: 335729 atgaacatttataatgtata 335710
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>dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full
            insert sequence
          Length = 2439

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  cgccgccacggaggaagccg 281
            ||||||||||||||||||||
Sbjct: 1008 cgccgccacggaggaagccg 1027
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>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   gaacatgtccacgaatgacc 402
             ||||||||||||||||||||
Sbjct: 45149 gaacatgtccacgaatgacc 45130
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>dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015J08, full
           insert sequence
          Length = 2388

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 262 cgccgccacggaggaagccg 281
           ||||||||||||||||||||
Sbjct: 957 cgccgccacggaggaagccg 976
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>emb|AL132949.2|CEY53F4B Caenorhabditis elegans YAC Y53F4B, complete sequence
          Length = 227606

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      aaatatattaatattttcag 28
              ||||||||||||||||||||
Sbjct: 143567 aaatatattaatattttcag 143586
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      atatcgaaatatattaatat 22
              ||||||||||||||||||||
Sbjct: 142188 atatcgaaatatattaatat 142169
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>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence
          Length = 217178

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aaattgaactcccatccaaa 132
             ||||||||||||||||||||
Sbjct: 80566 aaattgaactcccatccaaa 80585
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>gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 tcccatccaaaaacaagaaccaat 145
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
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>gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 tcccatccaaaaacaagaaccaat 145
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   cgccgccacggaggaagccg 281
             ||||||||||||||||||||
Sbjct: 39408 cgccgccacggaggaagccg 39427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,167,960
Number of Sequences: 3902068
Number of extensions: 4167960
Number of successful extensions: 92368
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91946
Number of HSP's gapped (non-prelim): 413
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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