ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33f02 |
|---|---|
| Clone Library Name | barley_pub |
>NHAX_BACSU (O07552) Stress response protein nhaX| Length = 166 Score = 45.8 bits (107), Expect = 8e-05 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 12/135 (8%) Frame = +3 Query: 186 VVVAVDGSEESMKALRWALDSLRLRPDGALVVLH----------VQPPPGIAAG--LNPG 329 ++VA DGSE S KAL A+D L + A+ V H + PP A ++ G Sbjct: 7 IIVAFDGSENSKKALLTAID-LAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGG 65 Query: 330 PIPFGGPSVVEVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKICE 509 P + +V + I + TE ++ A + +++ + ++ GDP E I E Sbjct: 66 MTSVPDPLISDVTSPEPMIYEDR---TEEVIAEARMMLNEQQADGDIDILEGDPAESIIE 122 Query: 510 VTAELKADLLVMGCR 554 + AD++V G R Sbjct: 123 HANRISADMIVTGSR 137
>YXIE_BACSU (P42297) Hypothetical protein yxiE precursor| Length = 148 Score = 41.6 bits (96), Expect = 0.002 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Frame = +3 Query: 180 SSVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVV 359 + ++VA+DGS+ S KAL A+ L L +LHV + G +V Sbjct: 3 NKMLVAIDGSDMSAKALDAAVH-LAKEQQAELSILHVGREAVVTTSSLTG--------IV 53 Query: 360 EVPA-FAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADL 536 VP F I + ++ ILE+A + ++K V+ +T G+P +I E L Sbjct: 54 YVPEHFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSL 113 Query: 537 LVMGCR 554 +V+G R Sbjct: 114 IVVGSR 119
>Y1654_SYNY3 (P72817) Hypothetical protein sll1654| Length = 157 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Frame = +3 Query: 351 SVVEVPAFAQAIESHQRRITEAI---LEHALKICSDKNVEVKTQVVVGDPKEKICEVTAE 521 SVVE Q E+H EA+ LE A + S + + KT G IC+V E Sbjct: 58 SVVEKNPPGQDHEAHGMDSPEAVAKLLEAAQAVFSQQGIATKTIEREGMASFTICDVADE 117 Query: 522 LKADLLVMGCR 554 + ADL+VMGCR Sbjct: 118 VNADLIVMGCR 128
>Y1388_SYNY3 (P74148) Hypothetical protein sll1388| Length = 154 Score = 34.3 bits (77), Expect = 0.24 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Frame = +3 Query: 186 VVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEV 365 ++VA+D SE + + L+ A+ +L + L+V + P + P F G + + Sbjct: 6 ILVALDRSELAKEVLQQAI-ALGQKESSQLMVFYCIPVDSQDLSIYPS---FYGEAAI-- 59 Query: 366 PAFAQAIESH-QRRITEAI--LEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADL 536 F+Q I+ H + + TEA L+ ++ + V + V VG+P I ++ ADL Sbjct: 60 -GFSQIIKEHLEEQQTEAREWLQSIVQQVQEDGVACEWDVKVGEPGRWIRDMAKNWDADL 118 Query: 537 LVMGCR 554 +V+G R Sbjct: 119 VVLGRR 124
>Y531_METJA (Q57951) Hypothetical protein MJ0531| Length = 170 Score = 34.3 bits (77), Expect = 0.24 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Frame = +3 Query: 186 VVVAVDGSEESMKALRWALDSLRLRPDG--ALVVLHVQPPPGIAAGLNPGPIPFGGPSVV 359 +V+ DGS+ S++A + A++ + A+ V+ V P G+ A Sbjct: 29 IVIPTDGSDVSLEAAKHAINIAKEFDAEVYAIYVVDVSPFVGLPA--------------- 73 Query: 360 EVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADLL 539 + I + + L+ K+ + V++ T+++ G P +I E + KADL+ Sbjct: 74 --EGSWELISELLKEEGQEALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLI 131 Query: 540 VMG 548 VMG Sbjct: 132 VMG 134
>RUBA_WHEAT (P08823) RuBisCO large subunit-binding protein subunit alpha,| chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) (Fragment) Length = 543 Score = 33.1 bits (74), Expect = 0.54 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Frame = +3 Query: 312 AGLNPGPIPFGGPSVVE----VPAFAQAIESHQRRITEAILEHALKICSD---KNVEVKT 470 A + G +P GG + V VPA + IE H R+ I++ AL+ + N V+ Sbjct: 405 AAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEG 464 Query: 471 QVVVGDPKEKICEV 512 +VV+ KE E+ Sbjct: 465 EVVIEKIKESEWEM 478
>USPG_SALTY (P67093) Universal stress protein G| Length = 142 Score = 32.7 bits (73), Expect = 0.71 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Frame = +3 Query: 183 SVVVAVDGSEESM--KALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSV 356 ++++ VD E + KA+R A + DG + +LHV P G A+ S+ Sbjct: 4 TIIMPVDVFEMELSDKAIRHA--EFLAQQDGVIHLLHVLP--GSAS-----------MSL 48 Query: 357 VEVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADL 536 A + E H + E L+ + S +KT V G ++ + E+ EL AD+ Sbjct: 49 HRFAADVRRFEEHLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGEELDADV 108 Query: 537 LVMGCR 554 +V+G R Sbjct: 109 VVIGSR 114
>USPG_SALTI (P67094) Universal stress protein G| Length = 142 Score = 32.7 bits (73), Expect = 0.71 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Frame = +3 Query: 183 SVVVAVDGSEESM--KALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSV 356 ++++ VD E + KA+R A + DG + +LHV P G A+ S+ Sbjct: 4 TIIMPVDVFEMELSDKAIRHA--EFLAQQDGVIHLLHVLP--GSAS-----------MSL 48 Query: 357 VEVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADL 536 A + E H + E L+ + S +KT V G ++ + E+ EL AD+ Sbjct: 49 HRFAADVRRFEEHLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGEELDADV 108 Query: 537 LVMGCR 554 +V+G R Sbjct: 109 VVIGSR 114
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 32.3 bits (72), Expect = 0.93 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = +3 Query: 258 RPDGALVVLHVQPPPGIAAGLNPGPIPFGGP 350 +P GA L V PP G AA P P P GGP Sbjct: 1527 QPPGAEAPLPVPPPTGTAAAPAPTPSPAGGP 1557
>HCHA_STAAN (P64313) Chaperone protein hchA (Hsp31)| Length = 292 Score = 32.3 bits (72), Expect = 0.93 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = +3 Query: 183 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVE 362 + VV + SE+ + L WALD+ D +V L P ++AGLN P G SV Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSPLEGYSVCV 215 Query: 363 VP 368 P Sbjct: 216 FP 217
>HCHA_STAAM (P64312) Chaperone protein hchA (Hsp31)| Length = 292 Score = 32.3 bits (72), Expect = 0.93 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = +3 Query: 183 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVE 362 + VV + SE+ + L WALD+ D +V L P ++AGLN P G SV Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSPLEGYSVCV 215 Query: 363 VP 368 P Sbjct: 216 FP 217
>HCHA_STAAC (Q5HIC4) Chaperone protein hchA (Hsp31)| Length = 292 Score = 32.3 bits (72), Expect = 0.93 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = +3 Query: 183 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVE 362 + VV + SE+ + L WALD+ D +V L P ++AGLN P G SV Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSPLEGYSVCV 215 Query: 363 VP 368 P Sbjct: 216 FP 217
>Y2028_MYCBO (P64922) Hypothetical protein Mb2028c| Length = 295 Score = 32.0 bits (71), Expect = 1.2 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 5/126 (3%) Frame = +3 Query: 186 VVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEV 365 VVV VDGS ES A W +R + L V+HV A P P P E Sbjct: 10 VVVGVDGSLESDAAACWGATDAAMR-NIPLTVVHVVNAD--VATWPPMPYP-------ET 59 Query: 366 PAFAQAIESHQRRITEAILEHALKIC-----SDKNVEVKTQVVVGDPKEKICEVTAELKA 530 Q E Q I+ +A+K+ +D+ + VK+++V P + E++ E A Sbjct: 60 WGVWQEDEGRQ------IVANAVKLAKEAVGADRKLSVKSELVFSTPVPTMVEISNE--A 111 Query: 531 DLLVMG 548 +++V+G Sbjct: 112 EMVVLG 117
>Y2005_MYCTU (P64921) Hypothetical protein Rv2005c/MT2061| Length = 295 Score = 32.0 bits (71), Expect = 1.2 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 5/126 (3%) Frame = +3 Query: 186 VVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEV 365 VVV VDGS ES A W +R + L V+HV A P P P E Sbjct: 10 VVVGVDGSLESDAAACWGATDAAMR-NIPLTVVHVVNAD--VATWPPMPYP-------ET 59 Query: 366 PAFAQAIESHQRRITEAILEHALKIC-----SDKNVEVKTQVVVGDPKEKICEVTAELKA 530 Q E Q I+ +A+K+ +D+ + VK+++V P + E++ E A Sbjct: 60 WGVWQEDEGRQ------IVANAVKLAKEAVGADRKLSVKSELVFSTPVPTMVEISNE--A 111 Query: 531 DLLVMG 548 +++V+G Sbjct: 112 EMVVLG 117
>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)| Length = 641 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/40 (45%), Positives = 19/40 (47%) Frame = +3 Query: 252 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEVPA 371 RL P G PPPG GL PGP P G P + PA Sbjct: 456 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPA 495
>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)| Length = 641 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/40 (45%), Positives = 19/40 (47%) Frame = +3 Query: 252 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEVPA 371 RL P G PPPG GL PGP P G P + PA Sbjct: 456 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPA 495
>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding| protein SNP70) (Npw38-binding protein) (NpwBP) Length = 641 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/40 (45%), Positives = 19/40 (47%) Frame = +3 Query: 252 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEVPA 371 RL P G PPPG GL PGP P G P + PA Sbjct: 456 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPA 495
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/40 (45%), Positives = 19/40 (47%) Frame = +3 Query: 252 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEVPA 371 RL P G PPPG GL PGP P G P + PA Sbjct: 422 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPA 461
>YQA3_THEAQ (P74897) Hypothetical 14.6 kDa protein in QAH/OAS sulfhydrylase| 3'region Length = 137 Score = 30.8 bits (68), Expect = 2.7 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Frame = +3 Query: 183 SVVVAVDGSEESMKALRWALDSLRLRPDGA-LVVLHVQPPPGIAAGLNPGPIPFGGPSVV 359 ++++A DGS+ + +A A+ + GA L+V+H P P + Sbjct: 4 TILLAYDGSDHAKRAA--AVAKAEAQAHGARLLVVHAYEPV---------------PDYL 46 Query: 360 EVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADLL 539 P F +A++ R E + A+ + + ++ G P E I + KADL+ Sbjct: 47 GEPFFEEALKRRLER-AEKVRAEAMALTGVPREDAL--LLQGRPAEAILQAAIGEKADLI 103 Query: 540 VMGCR 554 VMG R Sbjct: 104 VMGTR 108
>RECR_SYNP6 (Q5N5P2) Recombination protein recR| Length = 199 Score = 30.8 bits (68), Expect = 2.7 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = +3 Query: 360 EVPAFAQAIES------HQRRITEAILEHALKICSDKNVEVKTQVVVGDPKEKIC-EVTA 518 E+ AFA+A+ + H +R E IC D + +T VV DP++ I E T Sbjct: 40 EIAAFAEALLAAKQQVGHCQRCFHLSSEDLCNICRDPKRDAQTICVVADPRDVIALEKTR 99 Query: 519 ELKADLLVMG 548 E K V+G Sbjct: 100 EYKGLYHVLG 109
>Y577_METJA (Q57997) Protein MJ0577| Length = 162 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 420 LEHALKICSDKNVEVKTQVVVGDPKEKICEVTAELKADLLVMG 548 +E+ K D +VK +VVG P E+I ++ + D+++MG Sbjct: 85 MENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMG 127
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +3 Query: 237 ALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVEVPA 371 AL + +P AL + + PP G PGP P GGP PA Sbjct: 179 ALQTSFKKPGSALPLQNPPLPPTFQPGAPPGPPPAGGPPPSRGPA 223
>ARGB_BARQU (Q6G1F7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 301 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +3 Query: 312 AGLNPGPIPFGGPSVVEVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGD- 488 +G+NP + GGP + E+ IES E+ L++ ++ VEV V+ G Sbjct: 62 SGINPVVVHGGGPQIAEI-LMKMGIESR--------FENGLRVTDERIVEVVEMVLAGSI 112 Query: 489 PKEKICEVTAE 521 KE + + AE Sbjct: 113 NKEIVALINAE 123
>ARGB_BARHE (Q6G552) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 301 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +3 Query: 312 AGLNPGPIPFGGPSVVEVPAFAQAIESHQRRITEAILEHALKICSDKNVEVKTQVVVGD- 488 +G+NP + GGP + E+ IES E+ L++ ++ VEV V+ G Sbjct: 62 SGINPVVVHGGGPQIAEI-LMKMGIESR--------FENGLRVTDERIVEVVEMVLAGSI 112 Query: 489 PKEKICEVTAE 521 KE + + AE Sbjct: 113 NKEIVALINAE 123
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 288 VQPPPGIAAGLNP-GPIPFGGPSVVEVPAFAQAIE-SHQRRIT 410 V PPP + + + P GP+P G P + + P Q ++ H R I+ Sbjct: 1412 VLPPPPVHSSIPPPGPVPMGMPPMSKPPPVQQTVDYGHGRDIS 1454
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 29.3 bits (64), Expect = 7.9 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 285 HVQPPPGIAAGLNPGPIPFGGP 350 H+ PP G PGPI GGP Sbjct: 892 HLSGPPAFGPGPGPGPIHIGGP 913
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +3 Query: 258 RPDGALVVLHVQPPPGIAAGLNPGPIPFGGP 350 +P GA L PP G+AA P P P GGP Sbjct: 1525 QPPGAEAPLPGPPPTGMAATPVPTPSPAGGP 1555
>HCHA_STAAW (Q8NXY2) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = +3 Query: 183 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVE 362 + VV + SE+ + L WALD+ D +V L P ++AGLN G SV Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSTLEGYSVCV 215 Query: 363 VP 368 P Sbjct: 216 FP 217
>HCHA_STAAS (Q6GBT6) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = +3 Query: 183 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSVVE 362 + VV + SE+ + L WALD+ D +V L P ++AGLN G SV Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSTLEGYSVCV 215 Query: 363 VP 368 P Sbjct: 216 FP 217
>MAAY4_SCHCO (P37935) Mating-type protein A-alpha Y4| Length = 928 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = -1 Query: 445 EQILSACSRIASVIRRWCDSMACANAGTSTTLGPPKGMGPGLR 317 EQ+ + V RW M A + T+GP K GPG R Sbjct: 112 EQVQKWLYEVLQVPERWKAEMEKQRAHINATMGPDKTTGPGKR 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,928,871 Number of Sequences: 219361 Number of extensions: 795550 Number of successful extensions: 4546 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4531 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
