ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPTN_HUMAN (Q6XPR3) Repetin 30 2.7
2LEG3_HUMAN (P17931) Galectin-3 (Galactose-specific lectin 3) (Ma... 30 2.7
3CTTB2_CALJA (Q2QLF8) Cortactin-binding protein 2 (CortBP2) 28 7.9

>RPTN_HUMAN (Q6XPR3) Repetin|
          Length = 784

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 441 GASSDQGEPAPQGGAEHFGRRAQQPQ-----DTPREPMTAHFLRRDR 316
           G SS  G+P  Q  + H+G+  +Q Q      T R+  ++H+ + DR
Sbjct: 374 GQSSHYGQPDTQDQSSHYGQTDRQDQSSHYGQTERQGQSSHYSQMDR 420



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 441 GASSDQGEPAPQGGAEHFGRRAQQPQ-----DTPREPMTAHFLRRDR 316
           G SS  G+P  QG   H+G+  +Q Q      T R+  ++H+ + D+
Sbjct: 434 GQSSHYGQPDRQGQNSHYGQTDRQGQSSHYGQTDRQGQSSHYSQPDK 480



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>LEG3_HUMAN (P17931) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29) (L-31)
           (Galactoside-binding protein) (GALBP)
          Length = 249

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 427 SGRASPAGWRGAFRPTGSTASGYS*GANDGALP-SP*PGAVP 305
           SG  +P GW GA+    + A GY   +  GA P    PGA P
Sbjct: 13  SGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYP 54



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>CTTB2_CALJA (Q2QLF8) Cortactin-binding protein 2 (CortBP2)|
          Length = 1662

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 178 EPTCSLA*LPTRITATASTTMG*HNNNSEAPTPLHTIRTQQAPAR-HP 318
           +PT S+  LP+    + + T G    NS+AP P+H++ +  A A  HP
Sbjct: 392 DPTSSIPPLPSNAAPSTAQTPGITPQNSQAP-PMHSLHSPCANASLHP 438


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,960,947
Number of Sequences: 219361
Number of extensions: 1343484
Number of successful extensions: 4012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4001
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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