ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493821.1| Oryza sativa (japonica cultivar-group), predic... 266 6e-68
2dbj|AK070255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
3gb|AY105553.1| Zea mays PCO069350 mRNA sequence 196 5e-47
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 167 4e-38
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
6dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
7dbj|AK058635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
8dbj|AK059424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
9ref|NM_129281.3| Arabidopsis thaliana ADK/ATPADK1; ATP binding /... 44 0.44
10gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987... 44 0.44
11gb|AC005896.3| Arabidopsis thaliana chromosome 2 clone F3G5 map ... 44 0.44
12gb|AY056092.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, compl... 44 0.44
13gb|AY052310.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, compl... 44 0.44
14gb|AY045694.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, compl... 44 0.44
15gb|AY085585.1| Arabidopsis thaliana clone 15831 mRNA, complete s... 44 0.44
16ref|XM_507756.1| PREDICTED: Pan troglodytes similar to ZNF239 pr... 42 1.7
17gb|BC026030.1| Homo sapiens zinc finger protein 239, mRNA (cDNA ... 42 1.7
18emb|AL450326.30| Human DNA sequence from clone RP11-517P14 on ch... 42 1.7
19emb|CR859783.1| Pongo pygmaeus mRNA; cDNA DKFZp468C049 (from clo... 42 1.7
20emb|CR605759.1| full-length cDNA clone CS0DC028YJ24 of Neuroblas... 42 1.7
21emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on ch... 42 1.7
22gb|U14625.1|AAU14625 Artemisia annua 3-hydroxy-3-methylglutaryl ... 42 1.7
23gb|U14624.1|AAU14624 Artemisia annua 3-hydroxy-3-methylglutaryl ... 42 1.7
24ref|XM_474301.1| Oryza sativa (japonica cultivar-group), predic... 40 6.9
25gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, c... 40 6.9
26gb|AF181450.5| Homo sapiens chromosome 8 clone GS1-5L10 map q21.... 40 6.9
27gb|AC036222.23| Homo sapiens chromosome 17, clone RP11-433M22, c... 40 6.9
28emb|AL442125.13| Human DNA sequence from clone RP11-230F18 on ch... 40 6.9
29gb|AY176748.1| Gymnoascoideus petalosporus strain ATCC 34351 28S... 40 6.9
30emb|X82126.1|HSHOK2EX2 H.sapiens HOK-2 gene, exon 2 40 6.9
31emb|X82125.1|HSHOK2H1 H.sapiens HOK-2 mRNA for zinc finger protein 40 6.9
32ref|NM_001016517.2| Xenopus tropicalis zinc finger protein 160 (... 40 6.9
33emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 6.9
34emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chr... 40 6.9
35gb|AC141435.28| Medicago truncatula clone mth2-21i11, complete s... 40 6.9
36gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.9
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
38gb|AC011748.7| Homo sapiens BAC clone RP11-441M4 from 2, complet... 40 6.9
39emb|AJ504410.1|TRU504410 Takifugu rubripes egln1 gene (partial),... 40 6.9
40gb|AY110704.1| Zea mays CL16117_1 mRNA sequence 40 6.9
41emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.9
42dbj|AB075340.1| Gymnoascus punctatus gene for 28S ribosomal RNA,... 40 6.9
43dbj|AB075339.1| Gymnoascus marginosporus gene for 28S ribosomal ... 40 6.9
44emb|CR926215.2| Xenopus tropicalis finished cDNA, clone TNeu074i11 40 6.9
45dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.9
46gb|AC167692.2| Daphnia pulex clone JGIAZSN-5P10, complete sequence 40 6.9
47emb|CT030174.3| M.truncatula DNA sequence from clone MTH2-71J12 ... 40 6.9
48ref|NM_005674.1| Homo sapiens zinc finger protein 239 (ZNF239), ... 40 6.9
49dbj|AB040687.1| Rollandina hyalinospora gene for 28S rRNA, parti... 40 6.9
50dbj|AB040685.1| Gymnoascoideus petalosporus gene for 28S rRNA, p... 40 6.9
51dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.9 
>ref|XM_493821.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 972

 Score =  266 bits (134), Expect = 6e-68
 Identities = 317/378 (83%)
 Strand = Plus / Minus

                                                                       
Query: 130 ttacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaactt 189
           |||||| | ||||| ||||||||| | ||||||||||||||| ||||| | ||||| |||
Sbjct: 972 ttacgcagtggccagcttcatctcttcttggtcctcgagatttagaacatggagcagctt 913

                                                                       
Query: 190 tggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttctg 249
           ||||||||| |||||||||||||| |||||||| || || | || ||||||||| | | |
Sbjct: 912 tggccaagactcagggattcctccaggcaaatcaaattctaaaagcttcccctgttgccg 853

                                                                       
Query: 250 atagaaatcctccacgggttggctcatttcattgtaaatccgcaggcgatttctcacaac 309
            |||||| |||| || ||||||||||| ||||| || ||| | || ||||||||||| ||
Sbjct: 852 gtagaaaccctcaacaggttggctcatgtcattatatatctgaagacgatttctcacgac 793

                                                                       
Query: 310 ctcttcagtgtcgtcatctcgagtaagaagctttgacatgcagttattggggggtaacaa 369
           |||||| || || ||| |||  || | |||||||||||| |||||||| ||||| || | 
Sbjct: 792 ctcttcggtatcatcagctctggtgataagctttgacatacagttatttgggggcaatag 733

                                                                       
Query: 370 tggtgacatgtatattggtggtagcccattttcagccttgacatcaatgcaggccagatt 429
           ||||| |||||| |||||||| |||||||||||| |||| |||||||||||||||| |||
Sbjct: 732 tggtgccatgtagattggtggcagcccattttcacccttcacatcaatgcaggccaaatt 673

                                                                       
Query: 430 gaagttcttaccacactggctacaaatacgtctaccaaggcatttctgtactatgatatc 489
           ||||||||| ||||| |||| |||||||||||| |||||||| ||||  |||| || |||
Sbjct: 672 gaagttctttccacattggccacaaatacgtctgccaaggcacttctcaactaggacatc 613

                             
Query: 490 ttccctcaacttcagatt 507
            || |||||||| |||||
Sbjct: 612 ctctctcaactttagatt 595
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>dbj|AK070255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P14, full
           insert sequence
          Length = 1193

 Score =  262 bits (132), Expect = 1e-66
 Identities = 294/348 (84%)
 Strand = Plus / Minus

                                                                       
Query: 129 cttacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaact 188
           ||||||| | ||||| ||||||||| | ||||||||||||||| ||||| | ||||| ||
Sbjct: 958 cttacgcagtggccagcttcatctcttcttggtcctcgagatttagaacatggagcagct 899

                                                                       
Query: 189 ttggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttct 248
           |||||||||| |||||||||||||| |||||||| || || | || ||||||||| | | 
Sbjct: 898 ttggccaagactcagggattcctccaggcaaatcaaattctaaaagcttcccctgttgcc 839

                                                                       
Query: 249 gatagaaatcctccacgggttggctcatttcattgtaaatccgcaggcgatttctcacaa 308
           | |||||| |||| || ||||||||||| ||||| || ||| | || ||||||||||| |
Sbjct: 838 ggtagaaaccctcaacaggttggctcatgtcattatatatctgaagacgatttctcacga 779

                                                                       
Query: 309 cctcttcagtgtcgtcatctcgagtaagaagctttgacatgcagttattggggggtaaca 368
           ||||||| || || ||| |||  || | |||||||||||| |||||||| ||||| || |
Sbjct: 778 cctcttcggtatcatcagctctggtgataagctttgacatacagttatttgggggcaata 719

                                                                       
Query: 369 atggtgacatgtatattggtggtagcccattttcagccttgacatcaatgcaggccagat 428
            ||||| |||||| |||||||| |||||||||||| |||| |||||||||||||||| ||
Sbjct: 718 gtggtgccatgtagattggtggcagcccattttcacccttcacatcaatgcaggccaaat 659

                                                           
Query: 429 tgaagttcttaccacactggctacaaatacgtctaccaaggcatttct 476
           |||||||||| ||||| |||| |||||||||||| |||||||| ||||
Sbjct: 658 tgaagttctttccacattggccacaaatacgtctgccaaggcacttct 611
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>gb|AY105553.1| Zea mays PCO069350 mRNA sequence
          Length = 740

 Score =  196 bits (99), Expect = 5e-47
 Identities = 264/319 (82%)
 Strand = Plus / Minus

                                                                       
Query: 131 tacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaacttt 190
           ||||| || |||||| ||| ||||| |||||||||||| || ||||| | ||||| ||||
Sbjct: 328 tacgctgcagccaacctcaactcctcttggtcctcgaggtttagaacctggagcagcttt 269

                                                                       
Query: 191 ggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttctga 250
           ||||||||||||||||| || || ||||| || || ||||  | |||||||||||   | 
Sbjct: 268 ggccaagattcagggatcccaccaggcaagtcaaattccaagagcttcccctgctctcgg 209

                                                                       
Query: 251 tagaaatcctccacgggttggctcatttcattgtaaatccgcaggcgatttctcacaacc 310
           |||||| | ||||| ||||| ||||| ||||| || ||| | || |||||||| || |||
Sbjct: 208 tagaaaccttccacaggttgactcatgtcattatatatctgaagccgatttctgaccacc 149

                                                                       
Query: 311 tcttcagtgtcgtcatctcgagtaagaagctttgacatgcagttattggggggtaacaat 370
           ||||| || || ||| |||| |||| |||||| ||||||||||| || ||||| |||| |
Sbjct: 148 tcttcggtatcatcagctcgggtaataagcttcgacatgcagttgtttgggggcaacagt 89

                                                                       
Query: 371 ggtgacatgtatattggtggtagcccattttcagccttgacatcaatgcaggccagattg 430
           |||| |||||| |||||||| || ||||||||| |||| |||||||||||||||| ||||
Sbjct: 88  ggtgccatgtagattggtgggagtccattttcacccttaacatcaatgcaggccaaattg 29

                              
Query: 431 aagttcttaccacactggc 449
           |||||||| ||||| ||||
Sbjct: 28  aagttctttccacattggc 10
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  167 bits (84), Expect = 4e-38
 Identities = 180/212 (84%)
 Strand = Plus / Minus

                                                                           
Query: 296     cgatttctcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacatgcagtta 355
               ||||||||||| |||||||| || || ||| |||  || | |||||||||||| ||||||
Sbjct: 1698519 cgatttctcacgacctcttcggtatcatcagctctggtgataagctttgacatacagtta 1698460

                                                                           
Query: 356     ttggggggtaacaatggtgacatgtatattggtggtagcccattttcagccttgacatca 415
               || ||||| || | ||||| |||||| |||||||| |||||||||||| |||| ||||||
Sbjct: 1698459 tttgggggcaatagtggtgccatgtagattggtggcagcccattttcacccttcacatca 1698400

                                                                           
Query: 416     atgcaggccagattgaagttcttaccacactggctacaaatacgtctaccaaggcatttc 475
               |||||||||| |||||||||||| ||||| |||| |||||||||||| |||||||| |||
Sbjct: 1698399 atgcaggccaaattgaagttctttccacattggccacaaatacgtctgccaaggcacttc 1698340

                                               
Query: 476     tgtactatgatatcttccctcaacttcagatt 507
               |  |||| || ||| || |||||||| |||||
Sbjct: 1698339 tcaactaggacatcctctctcaactttagatt 1698308



 Score =  107 bits (54), Expect = 4e-20
 Identities = 123/146 (84%)
 Strand = Plus / Minus

                                                                           
Query: 129     cttacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaact 188
               ||||||| | ||||| ||||||||| | ||||||||||||||| ||||| | ||||| ||
Sbjct: 1699036 cttacgcagtggccagcttcatctcttcttggtcctcgagatttagaacatggagcagct 1698977

                                                                           
Query: 189     ttggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttct 248
               |||||||||| |||||||||||||| |||||||| || || | || ||||||||| | | 
Sbjct: 1698976 ttggccaagactcagggattcctccaggcaaatcaaattctaaaagcttcccctgttgcc 1698917

                                         
Query: 249     gatagaaatcctccacgggttggctc 274
               | |||||| |||| || |||||||||
Sbjct: 1698916 ggtagaaaccctcaacaggttggctc 1698891
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  167 bits (84), Expect = 4e-38
 Identities = 180/212 (84%)
 Strand = Plus / Minus

                                                                           
Query: 296     cgatttctcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacatgcagtta 355
               ||||||||||| |||||||| || || ||| |||  || | |||||||||||| ||||||
Sbjct: 1698517 cgatttctcacgacctcttcggtatcatcagctctggtgataagctttgacatacagtta 1698458

                                                                           
Query: 356     ttggggggtaacaatggtgacatgtatattggtggtagcccattttcagccttgacatca 415
               || ||||| || | ||||| |||||| |||||||| |||||||||||| |||| ||||||
Sbjct: 1698457 tttgggggcaatagtggtgccatgtagattggtggcagcccattttcacccttcacatca 1698398

                                                                           
Query: 416     atgcaggccagattgaagttcttaccacactggctacaaatacgtctaccaaggcatttc 475
               |||||||||| |||||||||||| ||||| |||| |||||||||||| |||||||| |||
Sbjct: 1698397 atgcaggccaaattgaagttctttccacattggccacaaatacgtctgccaaggcacttc 1698338

                                               
Query: 476     tgtactatgatatcttccctcaacttcagatt 507
               |  |||| || ||| || |||||||| |||||
Sbjct: 1698337 tcaactaggacatcctctctcaactttagatt 1698306



 Score =  107 bits (54), Expect = 4e-20
 Identities = 123/146 (84%)
 Strand = Plus / Minus

                                                                           
Query: 129     cttacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaact 188
               ||||||| | ||||| ||||||||| | ||||||||||||||| ||||| | ||||| ||
Sbjct: 1699034 cttacgcagtggccagcttcatctcttcttggtcctcgagatttagaacatggagcagct 1698975

                                                                           
Query: 189     ttggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttct 248
               |||||||||| |||||||||||||| |||||||| || || | || ||||||||| | | 
Sbjct: 1698974 ttggccaagactcagggattcctccaggcaaatcaaattctaaaagcttcccctgttgcc 1698915

                                         
Query: 249     gatagaaatcctccacgggttggctc 274
               | |||||| |||| || |||||||||
Sbjct: 1698914 ggtagaaaccctcaacaggttggctc 1698889
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score =  167 bits (84), Expect = 4e-38
 Identities = 180/212 (84%)
 Strand = Plus / Minus

                                                                          
Query: 296    cgatttctcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacatgcagtta 355
              ||||||||||| |||||||| || || ||| |||  || | |||||||||||| ||||||
Sbjct: 110982 cgatttctcacgacctcttcggtatcatcagctctggtgataagctttgacatacagtta 110923

                                                                          
Query: 356    ttggggggtaacaatggtgacatgtatattggtggtagcccattttcagccttgacatca 415
              || ||||| || | ||||| |||||| |||||||| |||||||||||| |||| ||||||
Sbjct: 110922 tttgggggcaatagtggtgccatgtagattggtggcagcccattttcacccttcacatca 110863

                                                                          
Query: 416    atgcaggccagattgaagttcttaccacactggctacaaatacgtctaccaaggcatttc 475
              |||||||||| |||||||||||| ||||| |||| |||||||||||| |||||||| |||
Sbjct: 110862 atgcaggccaaattgaagttctttccacattggccacaaatacgtctgccaaggcacttc 110803

                                              
Query: 476    tgtactatgatatcttccctcaacttcagatt 507
              |  |||| || ||| || |||||||| |||||
Sbjct: 110802 tcaactaggacatcctctctcaactttagatt 110771



 Score =  107 bits (54), Expect = 4e-20
 Identities = 123/146 (84%)
 Strand = Plus / Minus

                                                                          
Query: 129    cttacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaact 188
              ||||||| | ||||| ||||||||| | ||||||||||||||| ||||| | ||||| ||
Sbjct: 111499 cttacgcagtggccagcttcatctcttcttggtcctcgagatttagaacatggagcagct 111440

                                                                          
Query: 189    ttggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttct 248
              |||||||||| |||||||||||||| |||||||| || || | || ||||||||| | | 
Sbjct: 111439 ttggccaagactcagggattcctccaggcaaatcaaattctaaaagcttcccctgttgcc 111380

                                        
Query: 249    gatagaaatcctccacgggttggctc 274
              | |||||| |||| || |||||||||
Sbjct: 111379 ggtagaaaccctcaacaggttggctc 111354
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>dbj|AK058635.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D03, full
           insert sequence
          Length = 383

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Minus

                                                                       
Query: 129 cttacgccgcggccaacttcatctcctgttggtcctcgagattcagaacgtcgagcaact 188
           ||||||| | ||||| ||||||||| | ||||||||||||||| ||||| | ||||| ||
Sbjct: 148 cttacgcagtggccagcttcatctcttcttggtcctcgagatttagaacatggagcagct 89

                                                                       
Query: 189 ttggccaagattcagggattcctccgggcaaatcgaactccagaaccttcccctgcttct 248
           |||||||||| |||||||||||||| |||||||| || || | || ||||||||| | | 
Sbjct: 88  ttggccaagactcagggattcctccaggcaaatcaaattctaaaagcttcccctgttgcc 29

                                       
Query: 249 gatagaaatcctccacgggttggctcat 276
           | |||||| |||| || |||||||||||
Sbjct: 28  ggtagaaaccctcaacaggttggctcat 1
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>dbj|AK059424.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E06, full
           insert sequence
          Length = 326

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 129 cttacgccgcggccaacttcatctcctgttggtcctcgagattcagaac 177
           ||||||| | ||||| ||||||||| | ||||||||||||||| |||||
Sbjct: 51  cttacgcagtggccagcttcatctcttcttggtcctcgagatttagaac 3
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>ref|NM_129281.3| Arabidopsis thaliana ADK/ATPADK1; ATP binding / nucleotide kinase/
           phosphotransferase, phosphate group as acceptor
           AT2G37250 (ADK/ATPADK1) mRNA, complete cds
          Length = 1309

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 303 tcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacat 348
           |||| ||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 736 tcaccacctcttcagtatcatcagctcgagtgacaagctttgacat 691
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>gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987-SK65D3, complete sequence
          Length = 192730

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 226   ctccagaaccttcccctgcttctgat 251
             |||||| |||||||||||||||||||
Sbjct: 92789 ctccagtaccttcccctgcttctgat 92764
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>gb|AC005896.3| Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete
             sequence
          Length = 119001

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 303   tcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacat 348
             |||| ||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 12273 tcaccacctcttcagtatcatcagctcgagtgacaagctttgacat 12228
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>gb|AY056092.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, complete cds
          Length = 855

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 303 tcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacat 348
           |||| ||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 682 tcaccacctcttcagtatcatcagctcgagtgacaagctttgacat 637
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>gb|AY052310.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, complete cds
          Length = 1298

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 303 tcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacat 348
           |||| ||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 725 tcaccacctcttcagtatcatcagctcgagtgacaagctttgacat 680
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>gb|AY045694.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, complete cds
          Length = 1182

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 303 tcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacat 348
           |||| ||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 731 tcaccacctcttcagtatcatcagctcgagtgacaagctttgacat 686
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>gb|AY085585.1| Arabidopsis thaliana clone 15831 mRNA, complete sequence
          Length = 1158

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 303 tcacaacctcttcagtgtcgtcatctcgagtaagaagctttgacat 348
           |||| ||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 709 tcaccacctcttcagtatcatcagctcgagtgacaagctttgacat 664
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>ref|XM_507756.1| PREDICTED: Pan troglodytes similar to ZNF239 protein (LOC450420),
            mRNA
          Length = 1939

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 429  tgaagttcttaccacactggctaca 453
            ||||||||||||||||||| |||||
Sbjct: 1211 tgaagttcttaccacactgactaca 1187
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>gb|BC026030.1| Homo sapiens zinc finger protein 239, mRNA (cDNA clone MGC:39220
           IMAGE:5460088), complete cds
          Length = 2031

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 429 tgaagttcttaccacactggctaca 453
           ||||||||||||||||||| |||||
Sbjct: 927 tgaagttcttaccacactgactaca 903
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>emb|AL450326.30| Human DNA sequence from clone RP11-517P14 on chromosome 10 Contains the
              5' end of the HNRPF gene for heterogeneous nuclear
              ribonucleoprotein F, part of a novel gene, the ZNF239 gene
              for zinc finger protein 239 (MOK2, HOK-2), two sinc finger
              protein pseudogenes and seven CpG islands, complete
              sequence
          Length = 197786

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 429    tgaagttcttaccacactggctaca 453
              ||||||||||||||||||| |||||
Sbjct: 154996 tgaagttcttaccacactgactaca 155020
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>emb|CR859783.1| Pongo pygmaeus mRNA; cDNA DKFZp468C049 (from clone DKFZp468C049)
          Length = 1935

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 429 tgaagttcttaccacactggctaca 453
           ||||||||||||||||||| |||||
Sbjct: 835 tgaagttcttaccacactgactaca 811
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>emb|CR605759.1| full-length cDNA clone CS0DC028YJ24 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1554

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 429 tgaagttcttaccacactggctaca 453
           ||||||||||||||||||| |||||
Sbjct: 529 tgaagttcttaccacactgactaca 505
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>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete
             sequence
          Length = 195936

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    gaaaaaatgtaaggtatgctt 93
             |||||||||||||||||||||
Sbjct: 16902 gaaaaaatgtaaggtatgctt 16922
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>gb|U14625.1|AAU14625 Artemisia annua 3-hydroxy-3-methylglutaryl coenzyme A reductase
            (AHM4) mRNA, complete cds
          Length = 1980

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 299  tttctcacaacctcttcagtg 319
            |||||||||||||||||||||
Sbjct: 1273 tttctcacaacctcttcagtg 1253
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>gb|U14624.1|AAU14624 Artemisia annua 3-hydroxy-3-methylglutaryl coenzyme A reductase
            (AHM1) mRNA, partial cds
          Length = 1923

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 299  tttctcacaacctcttcagtg 319
            |||||||||||||||||||||
Sbjct: 1230 tttctcacaacctcttcagtg 1210
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>ref|XM_474301.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 858

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 439 accacactggctacaaatacgtctaccaaggcattt 474
           |||||||||||| || || | |||||||||||||||
Sbjct: 552 accacactggctgcacatccttctaccaaggcattt 517
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>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ttggctcatttcattgtaaa 287
              ||||||||||||||||||||
Sbjct: 198562 ttggctcatttcattgtaaa 198543
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>gb|AF181450.5| Homo sapiens chromosome 8 clone GS1-5L10 map q21.3, complete sequence
          Length = 123088

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   tttctcacaacctcttcagt 318
             ||||||||||||||||||||
Sbjct: 71809 tttctcacaacctcttcagt 71790
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>gb|AC036222.23| Homo sapiens chromosome 17, clone RP11-433M22, complete sequence
          Length = 174965

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    gtttttatccttcttccccattat 71
             |||||||||||||||| |||||||
Sbjct: 89967 gtttttatccttcttctccattat 89990
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>emb|AL442125.13| Human DNA sequence from clone RP11-230F18 on chromosome 13 Contains the
              5' end of the gene for FLJ10704 (FLJ20092), a  novel gene,
              a novel gene (FLJ20623), the TFDP1 gene for transcription
              factor Dp-1 (DP-1, DRTF1) and 5 CpG islands, complete
              sequence
          Length = 184889

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 92     tttggactatgtaaggtctgtccc 115
              ||||||||||||||||||| ||||
Sbjct: 111338 tttggactatgtaaggtctttccc 111361
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>gb|AY176748.1| Gymnoascoideus petalosporus strain ATCC 34351 28S ribosomal RNA
           gene, partial sequence
          Length = 948

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 aggggacttacgccgcggcc 142
           ||||||||||||||||||||
Sbjct: 133 aggggacttacgccgcggcc 114
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>emb|X82126.1|HSHOK2EX2 H.sapiens HOK-2 gene, exon 2
          Length = 9367

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 429  tgaagttcttaccacactggctac 452
            ||||||||||||||||||| ||||
Sbjct: 8187 tgaagttcttaccacactgactac 8164
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>emb|X82125.1|HSHOK2H1 H.sapiens HOK-2 mRNA for zinc finger protein
          Length = 2386

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 429  tgaagttcttaccacactggctac 452
            ||||||||||||||||||| ||||
Sbjct: 1302 tgaagttcttaccacactgactac 1279
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>ref|NM_001016517.2| Xenopus tropicalis zinc finger protein 160 (zfp160), mRNA
          Length = 2204

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 49 tttttatccttcttccccat 68
          ||||||||||||||||||||
Sbjct: 80 tttttatccttcttccccat 61
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 439    accacactggctacaaatacgtctaccaaggcattt 474
              |||||||||||| || || | |||||||||||||||
Sbjct: 182616 accacactggctgcacatccttctaccaaggcattt 182651
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>emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chromosome 11 Contains a
             novel gene, the Arht1 gene for ras homolog gene family
             member T1, the 5' end of the Rhbdl4 gene for rhomboid
             veinlet-like 4 (Drosophila), complete sequence
          Length = 153420

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    acatatctatggagacaaga 47
             ||||||||||||||||||||
Sbjct: 54217 acatatctatggagacaaga 54198
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>gb|AC141435.28| Medicago truncatula clone mth2-21i11, complete sequence
          Length = 132497

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    aacaatggtgacatgtatat 384
              ||||||||||||||||||||
Sbjct: 131800 aacaatggtgacatgtatat 131819
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     gcttctgatagaaatcctcc 262
               ||||||||||||||||||||
Sbjct: 1761900 gcttctgatagaaatcctcc 1761919
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 439      accacactggctacaaatacgtctaccaaggcattt 474
                |||||||||||| || || | |||||||||||||||
Sbjct: 34271234 accacactggctgcacatccttctaccaaggcattt 34271269
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>gb|AC011748.7| Homo sapiens BAC clone RP11-441M4 from 2, complete sequence
          Length = 127037

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ctgcttctgatagaaatcct 260
             ||||||||||||||||||||
Sbjct: 97635 ctgcttctgatagaaatcct 97616
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>emb|AJ504410.1|TRU504410 Takifugu rubripes egln1 gene (partial), trax gene and disc1 gene
          Length = 44904

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  tctgtcccacgggggagggg 127
            ||||||||||||||||||||
Sbjct: 5460 tctgtcccacgggggagggg 5479
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>gb|AY110704.1| Zea mays CL16117_1 mRNA sequence
          Length = 973

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                       
Query: 412 atcaatgcaggccagattgaagttcttaccacactggctacaaatacgtctaccaaggca 471
           ||||||| |||||| ||||||||||   ||||||||||| || || |  || ||||||||
Sbjct: 591 atcaatggaggccacattgaagttccctccacactggctgcacatcctcctgccaaggca 650

               
Query: 472 tttc 475
           ||||
Sbjct: 651 tttc 654
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 439   accacactggctacaaatacgtctaccaaggcattt 474
             |||||||||||| || || | |||||||||||||||
Sbjct: 53849 accacactggctgcacatccttctaccaaggcattt 53884
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>dbj|AB075340.1| Gymnoascus punctatus gene for 28S ribosomal RNA, partial sequence
          Length = 611

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 aggggacttacgccgcggcc 142
           ||||||||||||||||||||
Sbjct: 153 aggggacttacgccgcggcc 134
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>dbj|AB075339.1| Gymnoascus marginosporus gene for 28S ribosomal RNA, partial
           sequence
          Length = 605

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 aggggacttacgccgcggcc 142
           ||||||||||||||||||||
Sbjct: 146 aggggacttacgccgcggcc 127
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>emb|CR926215.2| Xenopus tropicalis finished cDNA, clone TNeu074i11
          Length = 2204

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 49 tttttatccttcttccccat 68
          ||||||||||||||||||||
Sbjct: 80 tttttatccttcttccccat 61
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>dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-856M9, complete
              sequence
          Length = 187516

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    ttaccacactggctacaaat 456
              ||||||||||||||||||||
Sbjct: 144390 ttaccacactggctacaaat 144409
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>gb|AC167692.2| Daphnia pulex clone JGIAZSN-5P10, complete sequence
          Length = 37609

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    ggacacatatctatggagac 43
             ||||||||||||||||||||
Sbjct: 12432 ggacacatatctatggagac 12413
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>emb|CT030174.3| M.truncatula DNA sequence from clone MTH2-71J12 on chromosome 3,
             complete sequence
          Length = 133240

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   aacaatggtgacatgtatat 384
             ||||||||||||||||||||
Sbjct: 71752 aacaatggtgacatgtatat 71733
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>ref|NM_005674.1| Homo sapiens zinc finger protein 239 (ZNF239), mRNA
          Length = 2386

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 429  tgaagttcttaccacactggctac 452
            ||||||||||||||||||| ||||
Sbjct: 1302 tgaagttcttaccacactgactac 1279
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>dbj|AB040687.1| Rollandina hyalinospora gene for 28S rRNA, partial sequence,
           strain:CBS 548.72
          Length = 562

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 aggggacttacgccgcggcc 142
           ||||||||||||||||||||
Sbjct: 134 aggggacttacgccgcggcc 115
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>dbj|AB040685.1| Gymnoascoideus petalosporus gene for 28S rRNA, partial sequence,
           strain:CBS 252.72
          Length = 563

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 aggggacttacgccgcggcc 142
           ||||||||||||||||||||
Sbjct: 136 aggggacttacgccgcggcc 117
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>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete
             sequence
          Length = 198720

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   ttaccacactggctacaaat 456
             ||||||||||||||||||||
Sbjct: 10072 ttaccacactggctacaaat 10091


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,516,354
Number of Sequences: 3902068
Number of extensions: 4516354
Number of successful extensions: 80561
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80406
Number of HSP's gapped (non-prelim): 155
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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