ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HIS7_BUCAP (Q9ZHE4) Histidine biosynthesis bifunctional protein ... 28 6.5
2MSP1_PLAYO (P13828) Merozoite surface protein 1 precursor (Meroz... 28 8.5

>HIS7_BUCAP (Q9ZHE4) Histidine biosynthesis bifunctional protein hisB|
           [Includes: Histidinol-phosphatase (EC 3.1.3.15);
           Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
           (IGPD)]
          Length = 355

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 24  LLRKNRARETIRPTIKIYAHF-IPYDYPHKSIYSNLKTGIN 143
           ++++NR RE IR T + Y H  +  D  H   +S ++TGIN
Sbjct: 162 IIKRNRYREVIRETKETYIHIKLWLDLEH---HSCIQTGIN 199



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>MSP1_PLAYO (P13828) Merozoite surface protein 1 precursor (Merozoite surface|
           antigens) (PMMSA) (230 kDa) (PY230)
          Length = 1772

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 30  RKNRARETIRPTIKIYAHFIPYDYPHKSIYSNL 128
           +KN+A ETI P    Y + I Y  P   +Y+ +
Sbjct: 413 KKNKASETIIPLTIRYPNGISYPLPENDVYNKI 445


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,503,193
Number of Sequences: 219361
Number of extensions: 462080
Number of successful extensions: 776
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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