ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC131269.3| Homo sapiens chromosome 8, clone RP11-416I21, com... 42 0.68
2gb|AC130360.4| Homo sapiens chromosome 8, clone RP11-287P18, com... 42 0.68
3gb|AF252831.2| Homo sapiens chromosome 8 clone SCb-177k12 map 8p... 42 0.68
4gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, comp... 42 0.68
5gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, compl... 42 0.68
6gb|AC005406.2| Homo sapiens clone b128f11, complete sequence 42 0.68
7gb|AC130366.5| Homo sapiens chromosome 8, clone RP11-1236K1, com... 42 0.68
8gb|AC010598.6| Homo sapiens chromosome 5 clone CTC-560O9, comple... 42 0.68
9gb|AC130339.12| Homo sapiens chromosome 8, clone RP13-941O14, co... 42 0.68
10gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, com... 42 0.68
11gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, comp... 42 0.68
12gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, com... 42 0.68
13gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, co... 42 0.68
14gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 2.7
15emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on ch... 40 2.7
16emb|AL138772.8| Human DNA sequence from clone RP4-576A20 on chro... 40 2.7
17gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, com... 40 2.7
18gb|AC131956.1| Homo sapiens BAC clone RP11-793B23 from 4, comple... 40 2.7
19emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 i... 40 2.7
20emb|CR925816.4| Zebrafish DNA sequence from clone DKEY-87B19 in ... 40 2.7
21gb|AC171557.7| Mus musculus chromosome 7, clone RP24-62E17, comp... 40 2.7
22emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr... 40 2.7

>gb|AC131269.3| Homo sapiens chromosome 8, clone RP11-416I21, complete sequence
          Length = 190031

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttattattaaggaaaaata 39
             |||||||||||||||||||||
Sbjct: 98519 ctttattattaaggaaaaata 98539



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>gb|AC130360.4| Homo sapiens chromosome 8, clone RP11-287P18, complete sequence
          Length = 171474

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttattattaaggaaaaata 39
             |||||||||||||||||||||
Sbjct: 24611 ctttattattaaggaaaaata 24631



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>gb|AF252831.2| Homo sapiens chromosome 8 clone SCb-177k12 map 8p22-p21, complete
            sequence
          Length = 115137

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 19   ctttattattaaggaaaaata 39
            |||||||||||||||||||||
Sbjct: 3404 ctttattattaaggaaaaata 3424



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>gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, complete sequence
          Length = 158209

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ctttattattaaggaaaaata 39
              |||||||||||||||||||||
Sbjct: 117468 ctttattattaaggaaaaata 117488



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>gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, complete sequence
          Length = 192731

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    ttattaaggaaaaatagggca 44
             |||||||||||||||||||||
Sbjct: 21407 ttattaaggaaaaatagggca 21427



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>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence
          Length = 226345

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     ttattaaggaaaaatagggca 44
              |||||||||||||||||||||
Sbjct: 171385 ttattaaggaaaaatagggca 171365



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>gb|AC130366.5| Homo sapiens chromosome 8, clone RP11-1236K1, complete sequence
          Length = 178000

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttattattaaggaaaaata 39
             |||||||||||||||||||||
Sbjct: 40990 ctttattattaaggaaaaata 41010



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>gb|AC010598.6| Homo sapiens chromosome 5 clone CTC-560O9, complete sequence
          Length = 174551

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    ttattaaggaaaaatagggca 44
             |||||||||||||||||||||
Sbjct: 10840 ttattaaggaaaaatagggca 10820



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>gb|AC130339.12| Homo sapiens chromosome 8, clone RP13-941O14, complete sequence
          Length = 173255

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttattattaaggaaaaata 39
             |||||||||||||||||||||
Sbjct: 47754 ctttattattaaggaaaaata 47774



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>gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, complete sequence
          Length = 172084

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     ctttattattaaggaaaaata 39
              |||||||||||||||||||||
Sbjct: 161360 ctttattattaaggaaaaata 161340



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>gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, complete sequence
          Length = 178401

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     ctttattattaaggaaaaata 39
              |||||||||||||||||||||
Sbjct: 158204 ctttattattaaggaaaaata 158184



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>gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, complete sequence
          Length = 195488

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ctttattattaaggaaaaata 39
              |||||||||||||||||||||
Sbjct: 158553 ctttattattaaggaaaaata 158573



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>gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, complete sequence
          Length = 171639

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttattattaaggaaaaata 39
             |||||||||||||||||||||
Sbjct: 30219 ctttattattaaggaaaaata 30239



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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    attaaggaaaaatagggcac 45
             ||||||||||||||||||||
Sbjct: 38768 attaaggaaaaatagggcac 38749



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>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 103124

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    attattaaggaaaaataggg 42
             ||||||||||||||||||||
Sbjct: 95828 attattaaggaaaaataggg 95809



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>emb|AL138772.8| Human DNA sequence from clone RP4-576A20 on chromosome 10, complete
            sequence
          Length = 55835

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   aacaattaaaatctatgctc 81
            ||||||||||||||||||||
Sbjct: 7066 aacaattaaaatctatgctc 7085



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>gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, complete sequence
          Length = 142444

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    attaaggaaaaatagggcac 45
             ||||||||||||||||||||
Sbjct: 65886 attaaggaaaaatagggcac 65867



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>gb|AC131956.1| Homo sapiens BAC clone RP11-793B23 from 4, complete sequence
          Length = 195404

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tttattattaaggaaaaata 39
              ||||||||||||||||||||
Sbjct: 167485 tttattattaaggaaaaata 167466



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>emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 in linkage group 25,
              complete sequence
          Length = 168993

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 31     ggaaaaatagggcacgggaaacaa 54
              |||||||||||||| |||||||||
Sbjct: 161736 ggaaaaatagggcatgggaaacaa 161759



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>emb|CR925816.4| Zebrafish DNA sequence from clone DKEY-87B19 in linkage group 10,
             complete sequence
          Length = 45684

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    ggaaaaatagggcacgggaaacaa 54
             |||||||||||||| |||||||||
Sbjct: 12828 ggaaaaatagggcatgggaaacaa 12851



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>gb|AC171557.7| Mus musculus chromosome 7, clone RP24-62E17, complete sequence
          Length = 163762

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 107   taaatcaatttactcaaacctaaa 130
             |||||||||||| |||||||||||
Sbjct: 91142 taaatcaatttagtcaaacctaaa 91119



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>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tttattattaaggaaaaata 39
              ||||||||||||||||||||
Sbjct: 137763 tttattattaaggaaaaata 137782


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,166,008
Number of Sequences: 3902068
Number of extensions: 2166008
Number of successful extensions: 150685
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150613
Number of HSP's gapped (non-prelim): 72
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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