>YJIT_ECOLI (P39391) Hypothetical protein yjiT|
          Length = 521

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 408 ASVCHRPDQACRVPLCSHFKAKAQTEKADKTWRLLVKKVTRAKVMSSLAERKVVPEVVAE 229
           +++C+R   AC V  CS +  +    +   TW  + KK+  +   + L    +VP+ + +
Sbjct: 74  SNICNRDFAACFVLFCSEWYRRDYERQCGWTWDPIYKKIGISFTATELG--TIVPKGMED 131

Query: 228 SWAR 217
            W R
Sbjct: 132 YWLR 135

>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 441  CKRMLQLFRLHASVCHRPDQACRVPLCSHFKAKAQTEKADKTWR 310
            CK+++ L   HA  C R   AC VP C + + K   +K  +  R
Sbjct: 1604 CKQLIALCCYHAKHCTR--DACTVPFCMNIRQKLAEQKRSQQRR 1645

>UT14C_HUMAN (Q5TAP6) U3 small nucleolar RNA-associated protein 14 homolog C|
          Length = 766

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 438 KRMLQLFRLHASVCHRPDQACRVPLCSHFKAKAQTEK--ADKTWRLLVKKVTRAKVMSSL 265
           K  LQ   L  +  HR +      L S+++AKA+ EK    K +  +VKK    K +   
Sbjct: 208 KASLQAMSLEEAKMHRAELQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEF 267

Query: 264 AE-RKVVPEVVAE 229
            + +KV P V  E
Sbjct: 268 EQLQKVNPTVALE 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,445,209
Number of Sequences: 219361
Number of extensions: 827554
Number of successful extensions: 1948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)