ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33e08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472922.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1068 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 |||||| || |||| |||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 968 gacatcgccctcgccctcgtcaccttcttcaccagcagccgccacgtcttgtccgccttc 909 Query: 332 tccgtctgcgccttggccttgaaatggctgcagagcggcacacggca 378 |||| | || |||| |||||||||| ||||| |||||||| ||||| Sbjct: 908 tccgcccgcatcttgcccttgaaatgactgcacagcggcacgcggca 862 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/81 (88%), Gaps = 3/81 (3%) Strand = Plus / Minus Query: 391 ccggtggcagacggaggcgtgtaggcggaagagctgcagcatgcgcttgcaccgcgcgca 450 ||||| ||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||| Sbjct: 831 ccggtcgcagacggaggcgtggaggcggaacagctgcaccatgcgcttgcagcgcgtgca 772 Query: 451 c---ccgcccggcgcggcctt 468 | ||||||||||||||||| Sbjct: 771 cccgccgcccggcgcggcctt 751 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 213 tgtacctcgcccatgactcagccacaacctccggcaccacct 254 ||||||||||||| ||| | ||||| |||||||||||||||| Sbjct: 1036 tgtacctcgcccacgacgcggccaccacctccggcaccacct 995
>dbj|AK064143.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B11, full insert sequence Length = 1555 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 |||||| || |||| |||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 1120 gacatcgccctcgccctcgtcaccttcttcaccagcagccgccacgtcttgtccgccttc 1061 Query: 332 tccgtctgcgccttggccttgaaatggctgcagagcggcacacggca 378 |||| | || |||| |||||||||| ||||| |||||||| ||||| Sbjct: 1060 tccgcccgcatcttgcccttgaaatgactgcacagcggcacgcggca 1014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/81 (88%), Gaps = 3/81 (3%) Strand = Plus / Minus Query: 391 ccggtggcagacggaggcgtgtaggcggaagagctgcagcatgcgcttgcaccgcgcgca 450 ||||| ||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||| Sbjct: 983 ccggtcgcagacggaggcgtggaggcggaacagctgcaccatgcgcttgcagcgcgtgca 924 Query: 451 c---ccgcccggcgcggcctt 468 | ||||||||||||||||| Sbjct: 923 cccgccgcccggcgcggcctt 903 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 213 tgtacctcgcccatgactcagccacaacctccggcaccacct 254 ||||||||||||| ||| | ||||| |||||||||||||||| Sbjct: 1188 tgtacctcgcccacgacgcggccaccacctccggcaccacct 1147
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 |||||| || |||| |||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 89923 gacatcgccctcgccctcgtcaccttcttcaccagcagccgccacgtcttgtccgccttc 89864 Query: 332 tccgtctgcgccttggccttgaaatggctgca 363 |||| | || |||| |||||||||| ||||| Sbjct: 89863 tccgcccgcatcttgcccttgaaatgactgca 89832 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/81 (88%), Gaps = 3/81 (3%) Strand = Plus / Minus Query: 391 ccggtggcagacggaggcgtgtaggcggaagagctgcagcatgcgcttgcaccgcgcgca 450 ||||| ||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||| Sbjct: 89383 ccggtcgcagacggaggcgtggaggcggaacagctgcaccatgcgcttgcagcgcgtgca 89324 Query: 451 c---ccgcccggcgcggcctt 468 | ||||||||||||||||| Sbjct: 89323 cccgccgcccggcgcggcctt 89303 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 213 tgtacctcgcccatgactcagccacaacctccggcaccacct 254 ||||||||||||| ||| | ||||| |||||||||||||||| Sbjct: 89991 tgtacctcgcccacgacgcggccaccacctccggcaccacct 89950
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 |||||| || |||| |||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 24092944 gacatcgccctcgccctcgtcaccttcttcaccagcagccgccacgtcttgtccgccttc 24092885 Query: 332 tccgtctgcgccttggccttgaaatggctgca 363 |||| | || |||| |||||||||| ||||| Sbjct: 24092884 tccgcccgcatcttgcccttgaaatgactgca 24092853 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/81 (88%), Gaps = 3/81 (3%) Strand = Plus / Minus Query: 391 ccggtggcagacggaggcgtgtaggcggaagagctgcagcatgcgcttgcaccgcgcgca 450 ||||| ||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||| Sbjct: 24092404 ccggtcgcagacggaggcgtggaggcggaacagctgcaccatgcgcttgcagcgcgtgca 24092345 Query: 451 c---ccgcccggcgcggcctt 468 | ||||||||||||||||| Sbjct: 24092344 cccgccgcccggcgcggcctt 24092324 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 213 tgtacctcgcccatgactcagccacaacctccggcaccacct 254 ||||||||||||| ||| | ||||| |||||||||||||||| Sbjct: 24093012 tgtacctcgcccacgacgcggccaccacctccggcaccacct 24092971
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 |||||| || |||| |||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 86190 gacatcgccctcgccctcgtcaccttcttcaccagcagccgccacgtcttgtccgccttc 86131 Query: 332 tccgtctgcgccttggccttgaaatggctgca 363 |||| | || |||| |||||||||| ||||| Sbjct: 86130 tccgcccgcatcttgcccttgaaatgactgca 86099 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/81 (88%), Gaps = 3/81 (3%) Strand = Plus / Minus Query: 391 ccggtggcagacggaggcgtgtaggcggaagagctgcagcatgcgcttgcaccgcgcgca 450 ||||| ||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||| Sbjct: 85650 ccggtcgcagacggaggcgtggaggcggaacagctgcaccatgcgcttgcagcgcgtgca 85591 Query: 451 c---ccgcccggcgcggcctt 468 | ||||||||||||||||| Sbjct: 85590 cccgccgcccggcgcggcctt 85570 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 213 tgtacctcgcccatgactcagccacaacctccggcaccacct 254 ||||||||||||| ||| | ||||| |||||||||||||||| Sbjct: 86258 tgtacctcgcccacgacgcggccaccacctccggcaccacct 86217
>ref|XM_466540.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 ||||||||| | |||||| ||||||||||||| || ||| ||||||||||||| ||||| Sbjct: 986 gacatcaccctagctctcatcaccttcttcacaaggagcttccatgtcttgtccactttc 927
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 ||||||||| | |||||| ||||||||||||| || ||| ||||||||||||| ||||| Sbjct: 23193986 gacatcaccctagctctcatcaccttcttcacaaggagcttccatgtcttgtccactttc 23193927
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 272 gacatcaccttcgctctcgtcaccttcttcaccagaagccgccatgtcttgtccgctttc 331 ||||||||| | |||||| ||||||||||||| || ||| ||||||||||||| ||||| Sbjct: 51217 gacatcaccctagctctcatcaccttcttcacaaggagcttccatgtcttgtccactttc 51158
>emb|AL139136.17| Human DNA sequence from clone RP11-53I24 on chromosome 1 Contains the 3' end of the CRB1 gene for crumbs homolog 1 (Drosophila) and the 3' end of a novel gene, complete sequence Length = 181596 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 111 tcactactttgctaaatttagaccta 136 ||||| |||||||||||||||||||| Sbjct: 3211 tcactcctttgctaaatttagaccta 3236
>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence Length = 157286 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tcagccacaacctccggcaccacct 254 ||||||||||||||| ||||||||| Sbjct: 81381 tcagccacaacctcctgcaccacct 81405
>ref|XM_463586.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcaccttcttcaccagaagcc 311 ||||||||||||||||||||| Sbjct: 982 tcaccttcttcaccagaagcc 962
>ref|XM_516898.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC460872), mRNA Length = 3408 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 ccttcgctctcgtcaccttct 299 ||||||||||||||||||||| Sbjct: 1369 ccttcgctctcgtcaccttct 1349
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttcgcgcacgccgcgaagtgc 490 ||||||||||||||||||||| Sbjct: 1722672 ttcgcgcacgccgcgaagtgc 1722652
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcaccttcttcaccagaagcc 311 ||||||||||||||||||||| Sbjct: 95960 tcaccttcttcaccagaagcc 95940
>gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172401 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tcagccacaacctccggcaccacct 254 ||||||||||||||| ||||||||| Sbjct: 12916 tcagccacaacctcctgcaccacct 12940
>ref|NM_139645.2| Drosophila melanogaster CG15021-RA (CG15021), mRNA Length = 1545 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tcagccacaacctccggcaccacct 254 ||||||||||||||| ||||||||| Sbjct: 1245 tcagccacaacctcctgcaccacct 1269
>gb|AY071124.1| Drosophila melanogaster RE17165 full length cDNA Length = 1549 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tcagccacaacctccggcaccacct 254 ||||||||||||||| ||||||||| Sbjct: 1243 tcagccacaacctcctgcaccacct 1267
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcaccttcttcaccagaagcc 311 ||||||||||||||||||||| Sbjct: 39541518 tcaccttcttcaccagaagcc 39541498
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcaccttcttcaccagaagcc 311 ||||||||||||||||||||| Sbjct: 22474 tcaccttcttcaccagaagcc 22454
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcaccttcttcaccagaagcc 311 ||||||||||||||||||||| Sbjct: 116532 tcaccttcttcaccagaagcc 116512
>dbj|AK067269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099J01, full insert sequence Length = 1446 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcaccttcttcaccagaagcc 311 ||||||||||||||||||||| Sbjct: 1106 tcaccttcttcaccagaagcc 1086
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tcagccacaacctccggcaccacct 254 ||||||||||||||| ||||||||| Sbjct: 129336 tcagccacaacctcctgcaccacct 129360
>ref|XM_481037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 696 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gcaggcctggtccggccggt 395 |||||||||||||||||||| Sbjct: 552 gcaggcctggtccggccggt 571
>ref|XM_656011.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3499.2), mRNA Length = 1317 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 cgccaaggaggacatcaccttcgc 285 ||||||||||| |||||||||||| Sbjct: 1077 cgccaaggaggccatcaccttcgc 1100
>gb|AY350712.1| Arabidopsis arenosa clone BAC Aer6D24, complete sequence Length = 87863 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aattatcgaaaaatccagta 60 |||||||||||||||||||| Sbjct: 66776 aattatcgaaaaatccagta 66757
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 gcgcacgccgcgaagtgccg 492 |||||||||||||||||||| Sbjct: 2588262 gcgcacgccgcgaagtgccg 2588281
>ref|XM_746280.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g14600) partial mRNA Length = 1281 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 cgccaaggaggacatcaccttcgc 285 ||||||||||| |||||||||||| Sbjct: 1041 cgccaaggaggccatcaccttcgc 1064
>ref|XM_648023.1| Entamoeba histolytica HM-1:IMSS DNA mismatch repair protein mutS (93.t00003) partial mRNA Length = 2637 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ttatcttctcatctcaactt 198 |||||||||||||||||||| Sbjct: 2485 ttatcttctcatctcaactt 2504
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 ttatcttctcatctcaacttggcc 202 |||||||||||||| ||||||||| Sbjct: 89178 ttatcttctcatctgaacttggcc 89155
>emb|AL080275.20|HSDJ149L1 Human DNA sequence from clone RP1-149L1 on chromosome 6q12-13 Contains the 5' end of the COL9A1 gene for collagen IX alpha 1 and a CpG island, complete sequence Length = 113983 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 atcttctcatctcaacttgg 200 |||||||||||||||||||| Sbjct: 17200 atcttctcatctcaacttgg 17181
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 gcgcacccgcccggcgcggc 465 |||||||||||||||||||| Sbjct: 25567 gcgcacccgcccggcgcggc 25548
>gb|AC104641.11| Homo sapiens 3 BAC RP11-786O7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182114 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cttcgctctcgtcaccttct 299 |||||||||||||||||||| Sbjct: 86492 cttcgctctcgtcaccttct 86511
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gcaccgcgcgcacccgcccg 458 |||||||||||||||||||| Sbjct: 1649540 gcaccgcgcgcacccgcccg 1649559
>emb|BX000345.4|CNS08CDB Oryza sativa chromosome 12, . BAC OSJNBb0111J10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128678 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tagctttgtttgcagcaccc 27 |||||||||||||||||||| Sbjct: 78118 tagctttgtttgcagcaccc 78137
>gb|AC022887.10| Homo sapiens chromosome 8, clone RP11-480L14, complete sequence Length = 156238 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaatccagtataaacatcat 70 |||||||||||||||||||| Sbjct: 38177 aaatccagtataaacatcat 38158
>gb|U40417.1| Caenorhabditis elegans cosmid T08A9, complete sequence Length = 28122 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 ttcgctctcgtcaccttcttcacc 304 |||| ||||||||||||||||||| Sbjct: 19168 ttcggtctcgtcaccttcttcacc 19145
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tagctttgtttgcagcaccc 27 |||||||||||||||||||| Sbjct: 6179492 tagctttgtttgcagcaccc 6179473
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gcaggcctggtccggccggt 395 |||||||||||||||||||| Sbjct: 9397840 gcaggcctggtccggccggt 9397821
>gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, complete sequence Length = 170262 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ttgattcactactttgctaa 125 |||||||||||||||||||| Sbjct: 149919 ttgattcactactttgctaa 149900
>dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1112_D12 Length = 97572 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gcaggcctggtccggccggt 395 |||||||||||||||||||| Sbjct: 22431 gcaggcctggtccggccggt 22412
>dbj|AP004013.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1575_B01 Length = 86158 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gcaggcctggtccggccggt 395 |||||||||||||||||||| Sbjct: 74069 gcaggcctggtccggccggt 74050
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tagctttgtttgcagcaccc 27 |||||||||||||||||||| Sbjct: 6179368 tagctttgtttgcagcaccc 6179349
>emb|BX664712.3|CNS09SC2 Oryza sativa chromosome 12, . BAC B1373G08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131531 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tagctttgtttgcagcaccc 27 |||||||||||||||||||| Sbjct: 76475 tagctttgtttgcagcaccc 76456
>emb|AL831805.4|CNS08CAI Oryza sativa chromosome 12, . BAC OSJNBa0085J02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 166508 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tagctttgtttgcagcaccc 27 |||||||||||||||||||| Sbjct: 159780 tagctttgtttgcagcaccc 159799 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,550,527 Number of Sequences: 3902068 Number of extensions: 3550527 Number of successful extensions: 63524 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63149 Number of HSP's gapped (non-prelim): 370 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
