ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468939.1| Oryza sativa (japonica cultivar-group), mRNA 367 2e-98
2dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 2e-98
3dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 2e-98
4dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 2e-98
5gb|AY107457.1| Zea mays PCO103582 mRNA sequence 365 1e-97
6gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence 260 4e-66
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 256 6e-65
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 256 6e-65
9gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genom... 256 6e-65
10gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genom... 256 6e-65
11ref|NM_128939.3| Arabidopsis thaliana structural constituent of ... 68 3e-08
12gb|AY093289.1| Arabidopsis thaliana 30S ribosomal protein S5 (At... 68 3e-08
13gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE... 68 3e-08
14gb|AY054523.1| Arabidopsis thaliana 30S ribosomal protein S5 (At... 68 3e-08
15emb|BX819190.1|CNS0A84J Arabidopsis thaliana Full-length cDNA Co... 68 3e-08
16gb|AY087734.1| Arabidopsis thaliana clone 38063 mRNA, complete s... 68 3e-08
17dbj|AK220909.1| Arabidopsis thaliana mRNA for 30S ribosomal prot... 54 5e-04
18emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in ... 48 0.029
19ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.46
20gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence 42 1.8
21emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chro... 42 1.8
22gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence 40 7.1
23gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map... 40 7.1
24gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence 40 7.1
25emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in ... 40 7.1
26emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, comple... 40 7.1
27ref|XM_948126.1| Theileria annulata strain Ankara hypothetical p... 40 7.1
28emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chr... 40 7.1
29gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Canc... 40 7.1
30gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, co... 40 7.1
31gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Canc... 40 7.1
32gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park ... 40 7.1
33emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 i... 40 7.1
34gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 7.1
35emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in... 40 7.1
36emb|CT737307.2| CH251-89L9, complete sequence 40 7.1
37gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, comple... 40 7.1
38gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complet... 40 7.1
39emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, com... 40 7.1
40emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in... 40 7.1 
>ref|XM_468939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score =  367 bits (185), Expect = 2e-98
 Identities = 335/385 (87%)
 Strand = Plus / Minus

                                                                       
Query: 144 atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
           ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 979 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 920

                                                                       
Query: 204 tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
           |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 919 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 860

                                                                       
Query: 264 gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
           | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 859 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 800

                                                                       
Query: 324 cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 383
           || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 799 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 740

                                                                       
Query: 384 cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 443
           | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 739 catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 680

                                                                       
Query: 444 ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 503
           ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 679 ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 620

                                    
Query: 504 caccaacgtgtcccttcatgtcgcc 528
           |||| ||||| ||||||||||||||
Sbjct: 619 caccgacgtggcccttcatgtcgcc 595
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>dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G07, full
            insert sequence
          Length = 1281

 Score =  367 bits (185), Expect = 2e-98
 Identities = 335/385 (87%)
 Strand = Plus / Minus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1028 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 969

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 968  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 909

                                                                        
Query: 264  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 908  gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 849

                                                                        
Query: 324  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 383
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 848  caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 789

                                                                        
Query: 384  cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 443
            | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 788  catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 729

                                                                        
Query: 444  ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 503
            ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 728  ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 669

                                     
Query: 504  caccaacgtgtcccttcatgtcgcc 528
            |||| ||||| ||||||||||||||
Sbjct: 668  caccgacgtggcccttcatgtcgcc 644
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>dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042D13, full
            insert sequence
          Length = 1296

 Score =  367 bits (185), Expect = 2e-98
 Identities = 335/385 (87%)
 Strand = Plus / Minus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1034 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 975

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 974  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 915

                                                                        
Query: 264  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 914  gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 855

                                                                        
Query: 324  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 383
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 854  caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 795

                                                                        
Query: 384  cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 443
            | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 794  catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 735

                                                                        
Query: 444  ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 503
            ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 734  ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 675

                                     
Query: 504  caccaacgtgtcccttcatgtcgcc 528
            |||| ||||| ||||||||||||||
Sbjct: 674  caccgacgtggcccttcatgtcgcc 650
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>dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H10, full
            insert sequence
          Length = 1201

 Score =  367 bits (185), Expect = 2e-98
 Identities = 335/385 (87%)
 Strand = Plus / Minus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1038 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 979

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 978  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 919

                                                                        
Query: 264  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 918  gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 859

                                                                        
Query: 324  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 383
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 858  caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 799

                                                                        
Query: 384  cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 443
            | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 798  catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 739

                                                                        
Query: 444  ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 503
            ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 738  ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 679

                                     
Query: 504  caccaacgtgtcccttcatgtcgcc 528
            |||| ||||| ||||||||||||||
Sbjct: 678  caccgacgtggcccttcatgtcgcc 654
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>gb|AY107457.1| Zea mays PCO103582 mRNA sequence
          Length = 840

 Score =  365 bits (184), Expect = 1e-97
 Identities = 337/388 (86%)
 Strand = Plus / Minus

                                                                       
Query: 141 atcatttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtc 200
           |||||||||| | ||||||||| ||||  ||||||||  |||| |||||   ||||||  
Sbjct: 576 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 517

                                                                       
Query: 201 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 260
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 516 tcatcatctgcgtcgccttgatagtggctcgagcgttgttcagggggttcttgctgcgca 457

                                                                       
Query: 261 gctgcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccac 320
           ||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 456 gctgcttgcccagagcattttcaacaccagccatctccagcacaaccctcacggctccac 397

                                                                       
Query: 321 ctgcagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 380
           | ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 396 cagcaatgacaccagatccagggcaagcaggcctcagcatcaccttggctgctccatagt 337

                                                                       
Query: 381 tcgcctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgc 440
            ||| ||||||||||||||||| ||| ||||||| ||||| |||||||| || || ||||
Sbjct: 336 ccgcatcagctctgtgcgggaatgtggagtacttagttagcggcactgtgacaaggttgc 277

                                                                       
Query: 441 ggcggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgc 500
           | |||||||||||||| ||||||||||||||||| | ||| || |||||||| || ||||
Sbjct: 276 gccggccgttcatggcggccttggtgatggcctccgtgacctcgttggcctttcccacgc 217

                                       
Query: 501 caacaccaacgtgtcccttcatgtcgcc 528
           | ||||||||||| ||||||||||||||
Sbjct: 216 cgacaccaacgtggcccttcatgtcgcc 189
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>gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence
          Length = 584

 Score =  260 bits (131), Expect = 4e-66
 Identities = 263/307 (85%)
 Strand = Plus / Plus

                                                                       
Query: 141 atcatttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtc 200
           |||||||||| | ||||||||| ||||  ||||||||  |||| |||||   ||||||  
Sbjct: 272 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 331

                                                                       
Query: 201 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 260
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 332 tcatcatctgcgtcgccttgatagtggctcgggcgttgttcagggggttcttgctgcgca 391

                                                                       
Query: 261 gctgcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccac 320
           ||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 392 gctgcttgcccagagcattttcaacaccagccatctccaacacaaccctcacagctccac 451

                                                                       
Query: 321 ctgcagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 380
           | ||| | |||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 452 cagcaataacaccagatccagggcaagcaggcctcaacatcaccttggctgctccatagt 511

                                                                       
Query: 381 tcgcctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgc 440
            ||| ||||||||||||||||| ||| ||||||| ||||| |||||||| || || ||||
Sbjct: 512 ccgcatcagctctgtgcgggaatgtggagtacttagttagcggcactgtgacaaggttgc 571

                  
Query: 441 ggcggcc 447
           | |||||
Sbjct: 572 gccggcc 578
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Plus

                                                                            
Query: 144      atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
                ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 19225001 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19225060

                                                                            
Query: 204      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19225061 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19225120

                                                                            
Query: 264      gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
                | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 19225121 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 19225180

                                                                         
Query: 324      cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 380
                || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 19225181 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 19225237



 Score =  125 bits (63), Expect = 2e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                            
Query: 410      tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 469
                |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 19228045 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 19228104

                                                                           
Query: 470      gcctctgagacttctttggccttgccgacgccaacaccaacgtgtcccttcatgtcgcc 528
                ||||| | ||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 19228105 gcctcggtgacctccttggccttgccaacgcccacaccgacgtggcccttcatgtcgcc 19228163
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Plus

                                                                            
Query: 144      atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
                ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 19219042 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19219101

                                                                            
Query: 204      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19219102 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19219161

                                                                            
Query: 264      gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
                | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 19219162 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 19219221

                                                                         
Query: 324      cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 380
                || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 19219222 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 19219278



 Score =  125 bits (63), Expect = 2e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                            
Query: 410      tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 469
                |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 19222086 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 19222145

                                                                           
Query: 470      gcctctgagacttctttggccttgccgacgccaacaccaacgtgtcccttcatgtcgcc 528
                ||||| | ||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 19222146 gcctcggtgacctccttggccttgccaacgcccacaccgacgtggcccttcatgtcgcc 19222204
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>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence,
            complete sequence
          Length = 140507

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Plus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 9162 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 9221

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 9222 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 9281

                                                                        
Query: 264  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 9282 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 9341

                                                                     
Query: 324  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 380
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 9342 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 9398



 Score =  125 bits (63), Expect = 2e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                         
Query: 410   tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 469
             |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 12206 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 12265

                                                                        
Query: 470   gcctctgagacttctttggccttgccgacgccaacaccaacgtgtcccttcatgtcgcc 528
             ||||| | ||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 12266 gcctcggtgacctccttggccttgccaacgcccacaccgacgtggcccttcatgtcgcc 12324
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>gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genomic sequence, complete
             sequence
          Length = 150137

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Minus

                                                                         
Query: 144   atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
             ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 18461 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 18402

                                                                         
Query: 204   tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
             |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 18401 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 18342

                                                                         
Query: 264   gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 323
             | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 18341 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 18282

                                                                      
Query: 324   cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 380
             || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 18281 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 18225



 Score =  125 bits (63), Expect = 2e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                         
Query: 410   tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 469
             |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 15417 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 15358

                                                                        
Query: 470   gcctctgagacttctttggccttgccgacgccaacaccaacgtgtcccttcatgtcgcc 528
             ||||| | ||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 15357 gcctcggtgacctccttggccttgccaacgcccacaccgacgtggcccttcatgtcgcc 15299
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>ref|NM_128939.3| Arabidopsis thaliana structural constituent of ribosome AT2G33800
           mRNA, complete cds
          Length = 1143

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 899 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 840

                                                                       
Query: 293 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 352
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 839 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 780

                                     
Query: 353 ctcagcatgaccttcgctgctccata 378
           || ||||| ||||| |||||||||||
Sbjct: 779 ctaagcatcaccttggctgctccata 754
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>gb|AY093289.1| Arabidopsis thaliana 30S ribosomal protein S5 (At2g33800) mRNA,
           complete cds
          Length = 941

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 821 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 762

                                                                       
Query: 293 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 352
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 761 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 702

                                     
Query: 353 ctcagcatgaccttcgctgctccata 378
           || ||||| ||||| |||||||||||
Sbjct: 701 ctaagcatcaccttggctgctccata 676
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>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
             sequence
          Length = 114144

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Plus

                                                                         
Query: 233   gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
             ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 54068 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 54127

                                                                         
Query: 293   atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 352
             ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 54128 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 54187

                                       
Query: 353   ctcagcatgaccttcgctgctccata 378
             || ||||| ||||| |||||||||||
Sbjct: 54188 ctaagcatcaccttggctgctccata 54213
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>gb|AY054523.1| Arabidopsis thaliana 30S ribosomal protein S5 (At2g33800; T1B8.10)
           mRNA, complete cds
          Length = 1096

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 894 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 835

                                                                       
Query: 293 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 352
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 834 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 775

                                     
Query: 353 ctcagcatgaccttcgctgctccata 378
           || ||||| ||||| |||||||||||
Sbjct: 774 ctaagcatcaccttggctgctccata 749
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>emb|BX819190.1|CNS0A84J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB55ZA10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1078

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 836 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 777

                                                                       
Query: 293 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 352
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 776 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 717

                                     
Query: 353 ctcagcatgaccttcgctgctccata 378
           || ||||| ||||| |||||||||||
Sbjct: 716 ctaagcatcaccttggctgctccata 691
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>gb|AY087734.1| Arabidopsis thaliana clone 38063 mRNA, complete sequence
          Length = 1082

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 899 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 840

                                                                       
Query: 293 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 352
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 839 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 780

                                     
Query: 353 ctcagcatgaccttcgctgctccata 378
           || ||||| ||||| |||||||||||
Sbjct: 779 ctaagcatcaccttggctgctccata 754
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>dbj|AK220909.1| Arabidopsis thaliana mRNA for 30S ribosomal protein S5, complete
           cds, clone: RAFL22-47-G14
          Length = 326

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 292
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 115 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 56

                                                      
Query: 293 atctccagcacaaccctcacagctccacctgcagtgacaccag 335
           ||||| ||||||| ||| || ||||| || ||| | |||||||
Sbjct: 55  atctctagcacaatcctaaccgctcctccagcaatcacaccag 13
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>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5,
             complete sequence
          Length = 190731

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 144   atttccataactcctccatcggaa 167
             ||||||||||||||||||||||||
Sbjct: 57705 atttccataactcctccatcggaa 57682
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>ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000305.01.0)
            partial mRNA
          Length = 2391

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 129  tgattttgtttcatcatttcca 150
            ||||||||||||||||||||||
Sbjct: 1296 tgattttgtttcatcatttcca 1275
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>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence
          Length = 175949

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 176   tctgcagccacatctgagaac 196
             |||||||||||||||||||||
Sbjct: 66674 tctgcagccacatctgagaac 66694
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>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete
             sequence
          Length = 201549

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 127   aatgattttgtttcatcattt 147
             |||||||||||||||||||||
Sbjct: 34394 aatgattttgtttcatcattt 34374
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>gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  aatatatagatacaacagga 72
           ||||||||||||||||||||
Sbjct: 543 aatatatagatacaacagga 524
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>gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map human ortholog p21.3,
             complete sequence
          Length = 194447

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   gcttcccaagagcattttca 283
             ||||||||||||||||||||
Sbjct: 51984 gcttcccaagagcattttca 52003
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>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence
          Length = 165269

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 121   cagtttaatgattttgtttcatcatttc 148
             ||||||| |||||||| |||||||||||
Sbjct: 88282 cagtttagtgattttgcttcatcatttc 88309
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>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3,
             complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 121   cagtttaatgattttgtttcatcatttc 148
             ||||||| |||||||| |||||||||||
Sbjct: 99499 cagtttagtgattttgcttcatcatttc 99472
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>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence
          Length = 38779

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   agtttaatgattttgtttca 141
             ||||||||||||||||||||
Sbjct: 15035 agtttaatgattttgtttca 15054
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>ref|XM_948126.1| Theileria annulata strain Ankara hypothetical protein (TA09090)
            partial mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 128  atgattttgtttcatcatttccat 151
            |||| |||||||||||||||||||
Sbjct: 1115 atgaatttgtttcatcatttccat 1138
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>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete
             sequence
          Length = 108373

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tgcttcgcagctgcttccca 271
             ||||||||||||||||||||
Sbjct: 22518 tgcttcgcagctgcttccca 22537
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>gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104853

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   gcattttcaactccagccat 294
             ||||||||||||||||||||
Sbjct: 17575 gcattttcaactccagccat 17594
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>gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence
          Length = 143552

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    ggcaagcaggcctcagcatg 361
              ||||||||||||||||||||
Sbjct: 141797 ggcaagcaggcctcagcatg 141778
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>gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165785

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gcttcccaagagcattttca 283
              ||||||||||||||||||||
Sbjct: 130967 gcttcccaagagcattttca 130986
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>gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park PAC library) complete
              sequence
          Length = 148600

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    gcttcccaagagcattttca 283
              ||||||||||||||||||||
Sbjct: 139679 gcttcccaagagcattttca 139660
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>emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 in linkage group 3,
              complete sequence
          Length = 184845

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 121    cagtttaatgattttgtttcatcatttc 148
              ||||||| |||||||| |||||||||||
Sbjct: 168995 cagtttagtgattttgcttcatcatttc 168968
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>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   ggcaagcaggcctcagcatg 361
             ||||||||||||||||||||
Sbjct: 44716 ggcaagcaggcctcagcatg 44697
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>emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in linkage group 5,
              complete sequence
          Length = 172861

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    atttccataactcctccatcggaa 167
              ||||||||| ||||||||||||||
Sbjct: 129015 atttccatatctcctccatcggaa 129038
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>emb|CT737307.2| CH251-89L9, complete sequence
          Length = 180080

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   gcttcccaagagcattttca 283
             ||||||||||||||||||||
Sbjct: 56465 gcttcccaagagcattttca 56446
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>gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, complete sequence
          Length = 160574

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   tgattttgtttcatcatttccata 152
             |||||||||||||| |||||||||
Sbjct: 67725 tgattttgtttcataatttccata 67702
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>gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complete sequence
          Length = 148392

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 129    tgattttgtttcatcatttccata 152
              |||||||||||||| |||||||||
Sbjct: 143508 tgattttgtttcataatttccata 143485
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>emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, complete sequence
          Length = 210900

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aatgattttgtttcatcatt 146
             ||||||||||||||||||||
Sbjct: 54435 aatgattttgtttcatcatt 54454
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>emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in linkage group 18,
             complete sequence
          Length = 182116

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   tccagccatctccagcacaa 305
             ||||||||||||||||||||
Sbjct: 87295 tccagccatctccagcacaa 87314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,529,810
Number of Sequences: 3902068
Number of extensions: 4529810
Number of successful extensions: 92247
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92140
Number of HSP's gapped (non-prelim): 105
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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