ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33e02 |
|---|---|
| Clone Library Name | barley_pub |
>U195A_ARATH (Q9C9G6) Hypothetical UPF0195 protein At1g68310| Length = 159 Score = 127 bits (318), Expect = 3e-29 Identities = 65/100 (65%), Positives = 77/100 (77%), Gaps = 2/100 (2%) Frame = +3 Query: 312 IVMELINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIR--DIKDPEHPYSLED 485 +V LIN NP+I+ K+ERR R DE E IDQLEIFD + +IKDPEHP +LED Sbjct: 1 MVSGLINENPIIYPKKERRLRTDTSITDELTPEPIDQLEIFDILSSSNIKDPEHPNTLED 60 Query: 486 LNVVNEDSVEINDELSHVRVTFTPTVEHCSMATIIGLCLR 605 L VV EDSVE++DE S+VRVTFTPTVEHCSMAT+IGLC+R Sbjct: 61 LRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVR 100
>U195A_DROME (Q9VTC4) Hypothetical UPF0195 protein CG7949| Length = 156 Score = 101 bits (252), Expect = 1e-21 Identities = 48/95 (50%), Positives = 68/95 (71%) Frame = +3 Query: 321 ELINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVN 500 E+ N NP ++++ + R A E+ DEN + D+ EIFD IR+I DPEHP +LE+L+VV Sbjct: 4 EIENINPNVYDRIKERVLTANEE-DENVPDPFDKREIFDLIRNINDPEHPLTLEELHVVQ 62 Query: 501 EDSVEINDELSHVRVTFTPTVEHCSMATIIGLCLR 605 ED + IND + V ++FTPT+ HCSMAT+IGL +R Sbjct: 63 EDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIR 97
>U195_CAEEL (O62252) Hypothetical UPF0195 protein F45G2.10 in chromosome III| Length = 160 Score = 99.8 bits (247), Expect = 6e-21 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 2/96 (2%) Frame = +3 Query: 324 LINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNE 503 L NANP + + + R + DE+ + ID EIFD IRDI DPEHPY+LE LNVV E Sbjct: 6 LDNANPTLFDSKPRHRPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQE 65 Query: 504 DSVE--INDELSHVRVTFTPTVEHCSMATIIGLCLR 605 + ++ I++E + V+V FTPT+ HCSMAT+IGL +R Sbjct: 66 ELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIR 101
>FA96B_MOUSE (Q9D187) Protein FAM96B| Length = 163 Score = 97.8 bits (242), Expect = 2e-20 Identities = 49/94 (52%), Positives = 66/94 (70%) Frame = +3 Query: 324 LINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNE 503 L NANP+I+E+ R A E+ DE ++ID EIFD IR I DPEHP +LE+LNVV + Sbjct: 12 LENANPLIYERSGERPVTAGEE-DEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQ 70 Query: 504 DSVEINDELSHVRVTFTPTVEHCSMATIIGLCLR 605 ++++D S V V FTPT+ HCSMAT+IGL ++ Sbjct: 71 VRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIK 104
>FA96B_HUMAN (Q9Y3D0) Protein FAM96B| Length = 163 Score = 97.1 bits (240), Expect = 4e-20 Identities = 49/94 (52%), Positives = 66/94 (70%) Frame = +3 Query: 324 LINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNE 503 L NANP+I+++ R A E+ DE ++ID EIFD IR I DPEHP +LE+LNVV + Sbjct: 12 LENANPLIYQRSGERPVTAGEE-DEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQ 70 Query: 504 DSVEINDELSHVRVTFTPTVEHCSMATIIGLCLR 605 V+++D S V V FTPT+ HCSMAT+IGL ++ Sbjct: 71 VRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIK 104
>U195B_ARATH (Q9SR25) Hypothetical UPF0195 protein At3g09380| Length = 149 Score = 95.5 bits (236), Expect = 1e-19 Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 1/94 (1%) Frame = +3 Query: 324 LINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHP-YSLEDLNVVN 500 L N NP+I+ KR RR R D+++T D+ + IRDIKDPEHP SLEDLNV+ Sbjct: 5 LTNKNPIIYPKRTRRYRT-----DQSST---DEFSSTNRIRDIKDPEHPELSLEDLNVLT 56 Query: 501 EDSVEINDELSHVRVTFTPTVEHCSMATIIGLCL 602 E+SVE++D S+VR+TFTPT+ HC + T IGLC+ Sbjct: 57 EESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCI 90
>FA96A_HUMAN (Q9H5X1) Protein FAM96A| Length = 160 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 3/64 (4%) Frame = +3 Query: 423 LEIFDHIRDIKDPEHPYSLEDLNVVNEDSVE---INDELSHVRVTFTPTVEHCSMATIIG 593 LE++D IR I+DPE P +LE+L VV+E VE IN+E V + FTPTV HCS+AT+IG Sbjct: 38 LEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIG 97 Query: 594 LCLR 605 LCLR Sbjct: 98 LCLR 101
>FA96A_MOUSE (Q9DCL2) Protein FAM96A| Length = 160 Score = 72.8 bits (177), Expect = 7e-13 Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 3/64 (4%) Frame = +3 Query: 423 LEIFDHIRDIKDPEHPYSLEDLNVVNEDSVE---INDELSHVRVTFTPTVEHCSMATIIG 593 LE++D IR I+DPE P +LE+L VV E VE IN++ V + FTPTV HCS+AT+IG Sbjct: 38 LEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIG 97 Query: 594 LCLR 605 LCLR Sbjct: 98 LCLR 101
>U195B_DROME (Q9V968) UPF0195 protein CG30152| Length = 218 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%) Frame = +3 Query: 396 ENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEI----NDELSHVRVTFTPTV 563 +N TE Q I+D +R I+DPE P +LEDLNVV ED + + +S VR+ F PTV Sbjct: 88 KNQTEL--QETIYDLLRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTV 145 Query: 564 EHCSMATIIGLCLR 605 HCS+AT+IGLC+R Sbjct: 146 PHCSLATLIGLCIR 159
>YHS2_YEAST (P38829) Hypothetical UPF0195 protein YHR122w| Length = 231 Score = 70.5 bits (171), Expect = 4e-12 Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 5/76 (6%) Frame = +3 Query: 393 DENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEIND-----ELSHVRVTFTP 557 +E + ID EI+D I I DPEHP SL L+VVN + ++++D E++ V + TP Sbjct: 97 EEEEPDLIDAQEIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHDSGNQNEMAEVVIKITP 156 Query: 558 TVEHCSMATIIGLCLR 605 T+ HCS+AT+IGL +R Sbjct: 157 TITHCSLATLIGLGIR 172
>YIVG_SCHPO (Q9UTL0) Hypothetical UPF0195 protein C144.16 in chromosome I| Length = 179 Score = 69.3 bits (168), Expect = 8e-12 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Frame = +3 Query: 408 EAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEINDEL---SHVRVTFTPTVEHCSM 578 + ID EI+D + I DPEHP +L L+VV + +E+ D + S++ V TPT+ HCSM Sbjct: 52 DPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSM 111 Query: 579 ATIIGLCLR 605 T+IGLC+R Sbjct: 112 CTLIGLCIR 120
>TE95_TETTH (Q94819) Telomerase component p95 (EC 2.7.7.49)| Length = 872 Score = 33.9 bits (76), Expect = 0.38 Identities = 20/77 (25%), Positives = 37/77 (48%) Frame = +3 Query: 324 LINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNE 503 L A + + K + + PE DE +E+ ++ FDH+ ++ + LED +V + Sbjct: 461 LKQATTIKNLKNNKNQEETPETKDETPSESTSGMKFFDHLSELTE------LEDFSVNLQ 514 Query: 504 DSVEINDELSHVRVTFT 554 + EI D L + + T Sbjct: 515 ATQEIYDSLHKLLIRST 531
>SGOL2_HUMAN (Q562F6) Shugoshin-like 2 (Tripin)| Length = 1265 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 351 EKRERRTRQ----APEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEI 518 +KRER RQ + DI E ++ ++ D R +DP ++ E L +NE ++ Sbjct: 408 KKRERSKRQFKNSSDVDIGEKIENRTERSDVLDGKRGAEDPGFIFNNEQLAQMNEQLAQV 467 Query: 519 ND 524 N+ Sbjct: 468 NE 469
>TRAF7_HUMAN (Q6Q0C0) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) (Ring finger and WD repeat domain 1) (RING finger protein 119) Length = 670 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 405 TEAIDQLEIFDHIR-DIKDPEHPYSLEDLNVVNEDSVEINDELSHV 539 +E IDQLE ++ D+ D EDL D+ +NDELSH+ Sbjct: 323 SEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHI 368
>YGJ3_YEAST (P53148) Hypothetical 104.8 kDa protein in PAN2-NUP145 intergenic| region Length = 917 Score = 30.8 bits (68), Expect = 3.2 Identities = 21/70 (30%), Positives = 32/70 (45%) Frame = +3 Query: 360 ERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEINDELSHV 539 ER ++ EN T + +EI D DP++P SL N +N D E+ EL+ + Sbjct: 260 ERSNDKSDLSKSENKTNSSQPMEITDIFH--ADPQNPMSLHSDNNINNDGNEM--ELTQI 315 Query: 540 RVTFTPTVEH 569 + F H Sbjct: 316 QTNFDRDNHH 325
>TRAF7_MOUSE (Q922B6) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) Length = 594 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 405 TEAIDQLEIFDHIR-DIKDPEHPYSLEDLNVVNEDSVEINDELSHV 539 +E IDQLE ++ D+ D EDL D+ +NDELSH+ Sbjct: 247 SEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHI 292
>YOBJ_BACSU (O34774) Hypothetical protein yobJ| Length = 280 Score = 30.0 bits (66), Expect = 5.4 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = -3 Query: 449 VSNMIKYLKLVYGLCCIFIYVFWCLTGAPLSFLMNHRVSIYQLHYYFPSAML 294 + N ++ KL++GL C +Y+FW + L M + I +F L Sbjct: 199 LGNWLEVNKLIFGLSCSALYIFWIIHYFLLKDTMQRKDEISLFQEWFDKTKL 250
>APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7| (Pseudo-response regulator 7) Length = 727 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3 Query: 438 HIRDIKDPEHPYSLEDLNVVNEDSVEINDELSHV 539 H++D ++PE P + NE SV+I++EL HV Sbjct: 398 HLQDNREPEAPNTHLKTLDTNEASVKISEELMHV 431
>NPM_RAT (P13084) Nucleophosmin (NPM) (Nucleolar phosphoprotein B23)| (Numatrin) (Nucleolar protein NO38) Length = 292 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = +3 Query: 354 KRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEINDELS 533 K +++ Q +D+ + + Q + K P+ P S+ED+ + S+E L Sbjct: 201 KNAQKSNQNGKDLKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLP 260 Query: 534 HVRVTFTPTVEHCSMAT 584 V F V++C T Sbjct: 261 KVEAKFINYVKNCFRMT 277
>NPM_MOUSE (Q61937) Nucleophosmin (NPM) (Nucleolar phosphoprotein B23)| (Numatrin) (Nucleolar protein NO38) Length = 292 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = +3 Query: 354 KRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPEHPYSLEDLNVVNEDSVEINDELS 533 K +++ Q +D+ + + Q + K P+ P S+ED+ + S+E L Sbjct: 201 KNAQKSNQNGKDLKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLP 260 Query: 534 HVRVTFTPTVEHCSMAT 584 V F V++C T Sbjct: 261 KVEAKFINYVKNCFRMT 277
>RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.7.7.6)| Length = 396 Score = 29.3 bits (64), Expect = 9.3 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Frame = +3 Query: 381 PEDIDENATEAIDQLEIFDHIRDIKDPEHPY-----SLEDLNVVNEDSVEINDELSHV 539 P+D E T+ ++ D + + +DP+ P +EDL + D+VEI D+ + + Sbjct: 78 PDDEAEYDTDGDEKFNPIDEMGEPEDPDDPSEQEEDEVEDLGSEDVDNVEIEDDAADI 135
>ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)| Length = 817 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = +3 Query: 297 HCRGKIVMELINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPE 464 + RGK V+E+ +P+I E RER + A ++ + + Q + + + DP+ Sbjct: 705 YMRGKRVLEINPRHPIIKELRERVVKDAEDESVKQTARLMYQTALMESGFMLNDPK 760
>RPOA_BUCAP (O69232) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 315 VMELINANPVIHEKRERRTRQAPEDIDENATEAIDQLEIFDHIRDIKDPE 464 V + + + +I E + T E I AT +QLE F +RD+K+PE Sbjct: 192 VEQRTDLDKLIIEMKTNGTIDPEEAIRRAATILSEQLEAFVDLRDVKEPE 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,259,024 Number of Sequences: 219361 Number of extensions: 1403332 Number of successful extensions: 3971 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3844 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3959 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
