ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
2gb|BT017582.1| Zea mays clone EL01N0429F01.c mRNA sequence 220 4e-54
3gb|AY104018.1| Zea mays PCO062587 mRNA sequence 204 2e-49
4ref|XM_462674.1| Oryza sativa (japonica cultivar-group), predic... 165 2e-37
5ref|XM_473729.1| Oryza sativa (japonica cultivar-group), predic... 165 2e-37
6emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 117 4e-23
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
8emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 117 4e-23
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
10dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
11gb|AY107550.1| Zea mays PCO084802 mRNA sequence 46 0.13
12gb|AE010132.1| Pyrococcus furiosus DSM 3638, section 7 of 173 of... 44 0.53
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
14dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
15dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
16emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 42 2.1
17emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in... 42 2.1
18ref|XM_474033.1| Oryza sativa (japonica cultivar-group), predic... 40 8.3
19gb|AC150887.4| Bos taurus BAC CH240-483B20 (Children's Hospital... 40 8.3
20gb|BC076022.1| Danio rerio zgc:92345, mRNA (cDNA clone MGC:92345... 40 8.3
21ref|XM_588942.2| PREDICTED: Bos taurus similar to chromosome 2 o... 40 8.3
22emb|AL035470.10|HS480J14 Human DNA sequence from clone RP3-480J1... 40 8.3
23emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chrom... 40 8.3
24emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chro... 40 8.3
25emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4,... 40 8.3
26emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4,... 40 8.3
27emb|BX511110.5| Zebrafish DNA sequence from clone CH211-235L10 i... 40 8.3
28gb|AC022001.5| Homo sapiens chromosome 3 clone RP11-169K17 map 3... 40 8.3
29gb|AC018494.6|AC018494 Homo sapiens chromosome 3 clone RP11-16M3... 40 8.3
30gb|AC018811.4|AC018811 Homo sapiens chromosome 3 clone RP11-13B4... 40 8.3
31ref|NM_001002449.1| Danio rerio zgc:92345 (zgc:92345), mRNA 40 8.3
32dbj|AK099615.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
33dbj|AK065639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
34emb|BX901875.9| Zebrafish DNA sequence from clone DKEY-183J10 in... 40 8.3
35emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 8.3
36gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complet... 40 8.3 
>dbj|AK068599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152P20, full
           insert sequence
          Length = 961

 Score =  264 bits (133), Expect = 3e-67
 Identities = 238/273 (87%)
 Strand = Plus / Plus

                                                                       
Query: 327 ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
           |||||||||||||||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 111 ataaatgctaaccctgtagtttatgagaaaaaagagaggcgttctcggcaggcaccagaa 170

                                                                       
Query: 387 gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgatcatattaga 446
             || ||||||||||||  ||||||| || |||||||| || ||||||||||||||||||
Sbjct: 171 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgatcatattaga 230

                                                                       
Query: 447 gacataaaggacccagaacatccatactcattggaagatcttaatgtggtaaatgaagac 506
           ||||||||||| ||||| || ||||||||| | ||||| |||||||| |||| ||| || 
Sbjct: 231 gacataaaggatccagagcacccatactcactcgaagagcttaatgttgtaactgaggat 290

                                                                       
Query: 507 tcggtcgaaatcaatgatgaacttagtcatgtcagggttactttcaccccaacagtggag 566
           || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 291 tcagttgaaatcaatgatgaacttagtcatgtcagggttacttttaccccaacagtggag 350

                                            
Query: 567 cattgcagtatggccactatcattggcctttgc 599
           | |||||||||||| ||  ||||||| ||||||
Sbjct: 351 cgttgcagtatggcgaccgtcattggactttgc 383
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>gb|BT017582.1| Zea mays clone EL01N0429F01.c mRNA sequence
          Length = 1028

 Score =  220 bits (111), Expect = 4e-54
 Identities = 243/287 (84%)
 Strand = Plus / Plus

                                                                       
Query: 318 atggagttgataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcag 377
           |||| |||||| |||||||| ||| | || |||||||||| ||| || |||| ||| |||
Sbjct: 228 atggggttgattaatgctaatcctataatccatgagaaaaaagaaagacgcatccgacag 287

                                                                       
Query: 378 gcaccagaagacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
           ||||||||   || ||||||||||||  ||||| ||||||||||||| || |||||||||
Sbjct: 288 gcaccagagaccacagatgaaaatgcggcagagtccatagaccagctggaaatatttgat 347

                                                                       
Query: 438 catattagagacataaaggacccagaacatccatactcattggaagatcttaatgtggta 497
           || |||||||| |||||||| ||||| || ||||||||| ||||| | || |||||||| 
Sbjct: 348 cacattagagatataaaggatccagagcacccatactcactggaacagctgaatgtggtg 407

                                                                       
Query: 498 aatgaagactcggtcgaaatcaatgatgaacttagtcatgtcagggttactttcacccca 557
           | |||||||||  | ||| |||||||||||   | |||||||||||||| ||||||||||
Sbjct: 408 actgaagactcaattgaactcaatgatgaaagcaatcatgtcagggttattttcacccca 467

                                                          
Query: 558 acagtggagcattgcagtatggccactatcattggcctttgcttacg 604
           ||||||||||| ||||||||||| ||||| |||||||||||| ||||
Sbjct: 468 acagtggagcactgcagtatggcaactattattggcctttgcatacg 514
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>gb|AY104018.1| Zea mays PCO062587 mRNA sequence
          Length = 1209

 Score =  204 bits (103), Expect = 2e-49
 Identities = 241/287 (83%)
 Strand = Plus / Plus

                                                                       
Query: 318 atggagttgataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcag 377
           |||| |||||| |||||||| ||| | || |||||||||| |||||||||  || | |||
Sbjct: 342 atggggttgattaatgctaatcctataatccatgagaaaaaagagaggcgtgccagacag 401

                                                                       
Query: 378 gcaccagaagacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
           ||||||||   || ||||||||||||| ||||| ||||||| ||||| || |||||||||
Sbjct: 402 gcaccagagaccacagatgaaaatgcagcagagcccatagatcagctggaaatatttgat 461

                                                                       
Query: 438 catattagagacataaaggacccagaacatccatactcattggaagatcttaatgtggta 497
           || |||||||| |||||||| ||||| || || |||||| ||||| | || |||||||| 
Sbjct: 462 cacattagagatataaaggatccagagcacccgtactcactggaacagctgaatgtggtg 521

                                                                       
Query: 498 aatgaagactcggtcgaaatcaatgatgaacttagtcatgtcagggttactttcacccca 557
           | |||||| ||  | ||| |||||||||||  || | ||||||||||||| |||||||||
Sbjct: 522 actgaagattcaattgaactcaatgatgaaagtaattatgtcagggttacattcacccca 581

                                                          
Query: 558 acagtggagcattgcagtatggccactatcattggcctttgcttacg 604
           ||||||||||| ||||||||||| ||||| |||||||||||| ||||
Sbjct: 582 acagtggagcactgcagtatggcaactattattggcctttgcatacg 628
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>ref|XM_462674.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2400

 Score =  165 bits (83), Expect = 2e-37
 Identities = 137/155 (88%)
 Strand = Plus / Plus

                                                                        
Query: 445  gagacataaaggacccagaacatccatactcattggaagatcttaatgtggtaaatgaag 504
            ||||||||||||| ||||| || ||||||||| | ||||| |||||||| |||| ||| |
Sbjct: 2057 gagacataaaggatccagagcacccatactcactcgaagagcttaatgttgtaactgagg 2116

                                                                        
Query: 505  actcggtcgaaatcaatgatgaacttagtcatgtcagggttactttcaccccaacagtgg 564
            | || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2117 attcagttgaaatcaatgatgaacttagtcatgtcagggttacttttaccccaacagtgg 2176

                                               
Query: 565  agcattgcagtatggccactatcattggcctttgc 599
            ||| |||||||||||| ||  ||||||| ||||||
Sbjct: 2177 agcgttgcagtatggcgaccgtcattggactttgc 2211
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>ref|XM_473729.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2400

 Score =  165 bits (83), Expect = 2e-37
 Identities = 137/155 (88%)
 Strand = Plus / Plus

                                                                        
Query: 445  gagacataaaggacccagaacatccatactcattggaagatcttaatgtggtaaatgaag 504
            ||||||||||||| ||||| || ||||||||| | ||||| |||||||| |||| ||| |
Sbjct: 2057 gagacataaaggatccagagcacccatactcactcgaagagcttaatgttgtaactgagg 2116

                                                                        
Query: 505  actcggtcgaaatcaatgatgaacttagtcatgtcagggttactttcaccccaacagtgg 564
            | || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2117 attcagttgaaatcaatgatgaacttagtcatgtcagggttacttttaccccaacagtgg 2176

                                               
Query: 565  agcattgcagtatggccactatcattggcctttgc 599
            ||| |||||||||||| ||  ||||||| ||||||
Sbjct: 2177 agcgttgcagtatggcgaccgtcattggactttgc 2211
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>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score =  117 bits (59), Expect = 4e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                         
Query: 436   atcatattagagacataaaggacccagaacatccatactcattggaagatcttaatgtgg 495
             |||||||||||||||||||||| ||||| || ||||||||| | ||||| |||||||| |
Sbjct: 95760 atcatattagagacataaaggatccagagcacccatactcactcgaagagcttaatgttg 95701

                                                            
Query: 496   taaatgaagactcggtcgaaatcaatgatgaacttagtcatgtcagg 542
             ||| ||| || || || ||||||||||||||||||||||||||||||
Sbjct: 95700 taactgaggattcagttgaaatcaatgatgaacttagtcatgtcagg 95654



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                         
Query: 327   ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
             |||||||||||||||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 95990 ataaatgctaaccctgtagtttatgagaaaaaagagaggcgttctcggcaggcaccagaa 95931

                                                                
Query: 387   gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
               || ||||||||||||  ||||||| || |||||||| || |||||||||
Sbjct: 95930 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgat 95880



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 538   tcagggttactttcaccccaacagtggagcattgcagtatggccactatcattggccttt 597
             ||||||||||||| |||||||||||||||| |||||||||||| ||  ||||||| ||||
Sbjct: 95573 tcagggttacttttaccccaacagtggagcgttgcagtatggcgaccgtcattggacttt 95514

               
Query: 598   gc 599
             ||
Sbjct: 95513 gc 95512
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 4e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                            
Query: 436      atcatattagagacataaaggacccagaacatccatactcattggaagatcttaatgtgg 495
                |||||||||||||||||||||| ||||| || ||||||||| | ||||| |||||||| |
Sbjct: 30116781 atcatattagagacataaaggatccagagcacccatactcactcgaagagcttaatgttg 30116722

                                                               
Query: 496      taaatgaagactcggtcgaaatcaatgatgaacttagtcatgtcagg 542
                ||| ||| || || || ||||||||||||||||||||||||||||||
Sbjct: 30116721 taactgaggattcagttgaaatcaatgatgaacttagtcatgtcagg 30116675



 Score =  117 bits (59), Expect = 4e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                            
Query: 436      atcatattagagacataaaggacccagaacatccatactcattggaagatcttaatgtgg 495
                |||||||||||||||||||||| ||||| || ||||||||| | ||||| |||||||| |
Sbjct: 30056078 atcatattagagacataaaggatccagagcacccatactcactcgaagagcttaatgttg 30056019

                                                               
Query: 496      taaatgaagactcggtcgaaatcaatgatgaacttagtcatgtcagg 542
                ||| ||| || || || ||||||||||||||||||||||||||||||
Sbjct: 30056018 taactgaggattcagttgaaatcaatgatgaacttagtcatgtcagg 30055972



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                            
Query: 327      ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
                |||||||||||||||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 30117011 ataaatgctaaccctgtagtttatgagaaaaaagagaggcgttctcggcaggcaccagaa 30116952

                                                                   
Query: 387      gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
                  || ||||||||||||  ||||||| || |||||||| || |||||||||
Sbjct: 30116951 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgat 30116901



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                            
Query: 327      ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
                |||||||||||||||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 30056308 ataaatgctaaccctgtagtttatgagaaaaaagagaggcgttctcggcaggcaccagaa 30056249

                                                                   
Query: 387      gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
                  || ||||||||||||  ||||||| || |||||||| || |||||||||
Sbjct: 30056248 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgat 30056198



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 538      tcagggttactttcaccccaacagtggagcattgcagtatggccactatcattggccttt 597
                ||||||||||||| |||||||||||||||| |||||||||||| ||  ||||||| ||||
Sbjct: 30116594 tcagggttacttttaccccaacagtggagcgttgcagtatggcgaccgtcattggacttt 30116535

                  
Query: 598      gc 599
                ||
Sbjct: 30116534 gc 30116533



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 538      tcagggttactttcaccccaacagtggagcattgcagtatggccactatcattggccttt 597
                ||||||||||||| |||||||||||||||| |||||||||||| ||  ||||||| ||||
Sbjct: 30055891 tcagggttacttttaccccaacagtggagcgttgcagtatggcgaccgtcattggacttt 30055832

                  
Query: 598      gc 599
                ||
Sbjct: 30055831 gc 30055830



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 264      gcagcgcctccccccggagc 283
                ||||||||||||||||||||
Sbjct: 32385375 gcagcgcctccccccggagc 32385394
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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
             complete sequence
          Length = 186142

 Score =  117 bits (59), Expect = 4e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                         
Query: 436   atcatattagagacataaaggacccagaacatccatactcattggaagatcttaatgtgg 495
             |||||||||||||||||||||| ||||| || ||||||||| | ||||| |||||||| |
Sbjct: 13192 atcatattagagacataaaggatccagagcacccatactcactcgaagagcttaatgttg 13133

                                                            
Query: 496   taaatgaagactcggtcgaaatcaatgatgaacttagtcatgtcagg 542
             ||| ||| || || || ||||||||||||||||||||||||||||||
Sbjct: 13132 taactgaggattcagttgaaatcaatgatgaacttagtcatgtcagg 13086



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                         
Query: 327   ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
             |||||||||||||||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 13422 ataaatgctaaccctgtagtttatgagaaaaaagagaggcgttctcggcaggcaccagaa 13363

                                                                
Query: 387   gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
               || ||||||||||||  ||||||| || |||||||| || |||||||||
Sbjct: 13362 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgat 13312



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 538   tcagggttactttcaccccaacagtggagcattgcagtatggccactatcattggccttt 597
             ||||||||||||| |||||||||||||||| |||||||||||| ||  ||||||| ||||
Sbjct: 13005 tcagggttacttttaccccaacagtggagcgttgcagtatggcgaccgtcattggacttt 12946

               
Query: 598   gc 599
             ||
Sbjct: 12945 gc 12944
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                          
Query: 327    ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
              ||||||||||| |||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 927089 ataaatgctaatcctgtagtttatgagaaaaaagagaggcgtgctcggcaggcaccagaa 927030

                                                                 
Query: 387    gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
                || ||||||||||||  ||||||| || |||||||| || |||||||||
Sbjct: 927029 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgat 926979



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                          
Query: 436    atcatattagagacataaaggacccagaacatccatactcattggaagatcttaatgtgg 495
              ||||||||||||| |||||||| ||||| |  ||||||||| ||||| | |||||||| |
Sbjct: 926856 atcatattagagatataaaggatccagagcgcccatactcactggaatagcttaatgttg 926797

                                          
Query: 496    taaatgaagactcggtcgaaatcaatga 523
              ||| |||||| ||  | |||||||||||
Sbjct: 926796 taactgaagattcaattgaaatcaatga 926769
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>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698G03
          Length = 147857

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                         
Query: 327   ataaatgctaaccctgtgattcatgagaaaagagagaggcgcacccgtcaggcaccagaa 386
             ||||||||||| |||||  || ||||||||| |||||||||  | || ||||||||||||
Sbjct: 62534 ataaatgctaatcctgtagtttatgagaaaaaagagaggcgtgctcggcaggcaccagaa 62475

                                                                
Query: 387   gacatagatgaaaatgcaacagaggccatagaccagcttgagatatttgat 437
               || ||||||||||||  ||||||| || |||||||| || |||||||||
Sbjct: 62474 accacagatgaaaatgcggcagaggctattgaccagctagaaatatttgat 62424



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                         
Query: 436   atcatattagagacataaaggacccagaacatccatactcattggaagatcttaatgtgg 495
             ||||||||||||| |||||||| ||||| |  ||||||||| ||||| | |||||||| |
Sbjct: 62301 atcatattagagatataaaggatccagagcgcccatactcactggaatagcttaatgttg 62242

                                         
Query: 496   taaatgaagactcggtcgaaatcaatga 523
             ||| |||||| ||  | |||||||||||
Sbjct: 62241 taactgaagattcaattgaaatcaatga 62214
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>gb|AY107550.1| Zea mays PCO084802 mRNA sequence
          Length = 722

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 549 ttcaccccaacagtggagcattgcagtatggccactatcattggcct 595
           ||||| ||||| ||| |||| ||||||||||||||  ||||||||||
Sbjct: 334 ttcactccaactgtgcagcactgcagtatggccacagtcattggcct 380
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>gb|AE010132.1| Pyrococcus furiosus DSM 3638, section 7 of 173 of the complete genome
          Length = 11093

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 441  attagagacataaaggacccag 462
            ||||||||||||||||||||||
Sbjct: 2329 attagagacataaaggacccag 2308
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 258      caccaagcagcgcctccccccg 279
                ||||||||||||||||||||||
Sbjct: 26639044 caccaagcagcgcctccccccg 26639023
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>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0708H12
          Length = 162381

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 258  caccaagcagcgcctccccccg 279
            ||||||||||||||||||||||
Sbjct: 1074 caccaagcagcgcctccccccg 1053
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>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_F09
          Length = 139371

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 258   caccaagcagcgcctccccccg 279
             ||||||||||||||||||||||
Sbjct: 73205 caccaagcagcgcctccccccg 73184
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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    gcctccctggagcagccgcgc 202
              |||||||||||||||||||||
Sbjct: 281240 gcctccctggagcagccgcgc 281260
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>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19,
              complete sequence
          Length = 154891

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 441    attagagacataaaggaccca 461
              |||||||||||||||||||||
Sbjct: 102881 attagagacataaaggaccca 102901
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>ref|XM_474033.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2154

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 gcagcgcctccccccggagc 283
           ||||||||||||||||||||
Sbjct: 175 gcagcgcctccccccggagc 156
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>gb|AC150887.4| Bos taurus  BAC CH240-483B20 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 157543

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    cttaatgtggtaaatgaaga 505
              ||||||||||||||||||||
Sbjct: 100917 cttaatgtggtaaatgaaga 100898
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>gb|BC076022.1| Danio rerio zgc:92345, mRNA (cDNA clone MGC:92345 IMAGE:7055776),
           complete cds
          Length = 1429

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 570 tgcagtatggccactatcattggccttt 597
           ||||||||||||||  ||||||||||||
Sbjct: 331 tgcagtatggccacactcattggccttt 358
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>ref|XM_588942.2| PREDICTED: Bos taurus similar to chromosome 2 open reading frame
           32, transcript variant 1 (LOC539715), mRNA
          Length = 1645

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 181 cgcctccctggagcagccgcgcccgccc 208
           |||| ||||||||| |||||||||||||
Sbjct: 283 cgcccccctggagccgccgcgcccgccc 310
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>emb|AL035470.10|HS480J14 Human DNA sequence from clone RP3-480J14 on chromosome 6q22.2-23.1
            Contains the 3' end of the PTPRK gene for protein
            tyrosine phosphatase receptor type K (R-PTP-KAPPA) and
            the 5' end of the C6orf190 gene, complete sequence
          Length = 105468

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  aaatcaatgatgaacttagt 533
            ||||||||||||||||||||
Sbjct: 5549 aaatcaatgatgaacttagt 5568
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>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete
             sequence
          Length = 194230

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 578   ggccactatcattggcctttgctt 601
             ||||||| ||||||||||||||||
Sbjct: 82807 ggccactctcattggcctttgctt 82784
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>emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chromosome 11 Contains two
             novel genes, the Chrne gene for cholinergic receptor
             nicotinic epsilon polypeptide, genes 4930544D05Rik,
             C730027E14Rik and LOC327956, the gene for
             mitogen-activated protein kinase kinase kinase kinase 6
             (Map4k6-pending), the Pld2 gene for phospholipase D2, the
             Psmb6 gene for proteasome (prosome, macropain) subunit
             beta type 6, a ribosomal protein L34 pseudogene, the 3'
             end of gene 2010003F10Rik and three CpG islands, complete
             sequence
          Length = 123943

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 578   ggccactatcattggcctttgctt 601
             ||||||| ||||||||||||||||
Sbjct: 73704 ggccactctcattggcctttgctt 73727
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>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
            complete sequence
          Length = 123480

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  gcagcgcctccccccggagc 283
            ||||||||||||||||||||
Sbjct: 2176 gcagcgcctccccccggagc 2195
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>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
              complete sequence
          Length = 159502

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gcagcgcctccccccggagc 283
              ||||||||||||||||||||
Sbjct: 154964 gcagcgcctccccccggagc 154983
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>emb|BX511110.5| Zebrafish DNA sequence from clone CH211-235L10 in linkage group 7,
             complete sequence
          Length = 89482

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 570   tgcagtatggccactatcattggccttt 597
             ||||||||||||||  ||||||||||||
Sbjct: 51515 tgcagtatggccacactcattggccttt 51488
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>gb|AC022001.5| Homo sapiens chromosome 3 clone RP11-169K17 map 3p, complete sequence
          Length = 164607

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aaaggagccacgaggagagc 33
             ||||||||||||||||||||
Sbjct: 84112 aaaggagccacgaggagagc 84131
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>gb|AC018494.6|AC018494 Homo sapiens chromosome 3 clone RP11-16M3 map 3p, complete sequence
          Length = 174612

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     aaaggagccacgaggagagc 33
              ||||||||||||||||||||
Sbjct: 149021 aaaggagccacgaggagagc 149002
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>gb|AC018811.4|AC018811 Homo sapiens chromosome 3 clone RP11-13B4 map 3p, complete sequence
          Length = 177834

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aaaggagccacgaggagagc 33
             ||||||||||||||||||||
Sbjct: 65761 aaaggagccacgaggagagc 65780
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>ref|NM_001002449.1| Danio rerio zgc:92345 (zgc:92345), mRNA
          Length = 1429

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 570 tgcagtatggccactatcattggccttt 597
           ||||||||||||||  ||||||||||||
Sbjct: 331 tgcagtatggccacactcattggccttt 358
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>dbj|AK099615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J08, full
           insert sequence
          Length = 2493

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 gcagcgcctccccccggagc 283
           ||||||||||||||||||||
Sbjct: 300 gcagcgcctccccccggagc 281
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>dbj|AK065639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035H03, full
           insert sequence
          Length = 2499

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 gcagcgcctccccccggagc 283
           ||||||||||||||||||||
Sbjct: 224 gcagcgcctccccccggagc 205
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>emb|BX901875.9| Zebrafish DNA sequence from clone DKEY-183J10 in linkage group 18,
             complete sequence
          Length = 47439

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   attcatgagaaaagagagag 364
             ||||||||||||||||||||
Sbjct: 38967 attcatgagaaaagagagag 38986
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>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete
             sequence
          Length = 63554

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   gcagcgcctccccccggagc 283
             ||||||||||||||||||||
Sbjct: 46810 gcagcgcctccccccggagc 46829
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>gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complete sequence
          Length = 188083

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   aagacatagatgaaaatgca 404
             ||||||||||||||||||||
Sbjct: 65541 aagacatagatgaaaatgca 65560


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,550,365
Number of Sequences: 3902068
Number of extensions: 4550365
Number of successful extensions: 83781
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83619
Number of HSP's gapped (non-prelim): 162
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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