ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33d11 |
|---|---|
| Clone Library Name | barley_pub |
>SCRK2_ORYSA (Q944F5) Fructokinase-2 (EC 2.7.1.4) (Fructokinase II) (OsFKII)| Length = 336 Score = 74.3 bits (181), Expect = 6e-14 Identities = 36/54 (66%), Positives = 40/54 (74%) Frame = -1 Query: 401 NVSKDDSIFYNEAKLREVLQFSNACGAICTTKKGAIXXXXXXXXXLEFISKGSN 240 NV+KDDSIF+NE KLRE L+FSNACGAICTTKKGAI E ISK +N Sbjct: 283 NVAKDDSIFHNEEKLREALKFSNACGAICTTKKGAIPALPTVAVAQELISKAAN 336
>SCRK2_MAIZE (Q6XZ78) Fructokinase-2 (EC 2.7.1.4) (ZmFRK2)| Length = 335 Score = 70.1 bits (170), Expect = 1e-12 Identities = 33/53 (62%), Positives = 39/53 (73%) Frame = -1 Query: 401 NVSKDDSIFYNEAKLREVLQFSNACGAICTTKKGAIXXXXXXXXXLEFISKGS 243 NV+KDDSIF+NE KLRE L+FSNACGAICTTKKGAI + I+K + Sbjct: 283 NVAKDDSIFHNEEKLREALKFSNACGAICTTKKGAIPALPTVATAQDLIAKAN 335
>SCRK_SOLTU (P37829) Fructokinase (EC 2.7.1.4)| Length = 319 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/32 (68%), Positives = 27/32 (84%) Frame = -1 Query: 389 DDSIFYNEAKLREVLQFSNACGAICTTKKGAI 294 D +I +EA+L+EVL+FS ACGAI TTKKGAI Sbjct: 271 DQAILEDEARLKEVLRFSCACGAITTTKKGAI 302
>SCRK1_MAIZE (Q6XZ79) Fructokinase-1 (EC 2.7.1.4) (ZmFRK1)| Length = 323 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/50 (48%), Positives = 30/50 (60%) Frame = -1 Query: 398 VSKDDSIFYNEAKLREVLQFSNACGAICTTKKGAIXXXXXXXXXLEFISK 249 + KD S +E KL E ++F+NACGAI TTKKGAI L+ I K Sbjct: 273 IVKDPSSLQDEKKLVESIKFANACGAITTTKKGAIPSLPTEAEVLQLIEK 322
>SCRK1_ORYSA (Q944F4) Fructokinase-1 (EC 2.7.1.4) (Fructokinase I) (OsFKI)| Length = 323 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = -1 Query: 398 VSKDDSIFYNEAKLREVLQFSNACGAICTTKKGAI 294 + +D S ++ KL E ++F+NACGAI TKKGAI Sbjct: 273 IVQDPSSLQDQKKLEEAIKFANACGAITATKKGAI 307
>SCRK_VIBAL (P22824) Fructokinase (EC 2.7.1.4)| Length = 307 Score = 31.6 bits (70), Expect = 0.47 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 371 NEAKLREVLQFSNACGAICTTKKGAIXXXXXXXXXLEFISK 249 N + +Q++N CGA+ TT+KGA+ L FI + Sbjct: 267 NHPVVSSAIQWANGCGALATTQKGAMTALPTQTELLRFIGQ 307
>POU12_BRARE (P56224) POU domain protein 12 (POU domain protein zp-12) (Class| III POU domain protein taichi) (Brain-specific homeobox/POU domain protein 1.1) (Brn-1.1) Length = 437 Score = 30.8 bits (68), Expect = 0.81 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Frame = -3 Query: 321 HLHHQEGSHPGAAHHRHRPGV--HQQGQQLETP 229 H HH + HP HH+H GV H +TP Sbjct: 212 HHHHHQQQHPHHHHHQHHAGVNSHDSHSDEDTP 244
>YDJE_BACSU (O34768) Hypothetical sugar kinase ydjE| Length = 320 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -1 Query: 401 NVSKDDSIFYNEAKLREVLQFSNACGAICTTKKGAI 294 N + S+ + KLRE++ F+N GA+ TK GAI Sbjct: 272 NTDQIQSVDADFVKLREIVAFANKVGALVCTKIGAI 307
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 309 QEGSHPGAAHHRHRPGVHQQGQQ 241 Q+G PG H +PG QQGQQ Sbjct: 616 QQGQQPGQGQHGQQPGQGQQGQQ 638
>Y2290_MYCBO (P64964) Hypothetical protein Mb2290c| Length = 388 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +2 Query: 269 RWRWWAAPGWLPSWWCRWHRK--RSRTAAPPSAW 364 RWR WAAP W+ + W R R+R A S W Sbjct: 12 RWREWAAPLWVGCNFSAWMRLLIRNRFAVHHSRW 45
>Y2267_MYCTU (P64963) Hypothetical protein Rv2267c/MT2329| Length = 388 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +2 Query: 269 RWRWWAAPGWLPSWWCRWHRK--RSRTAAPPSAW 364 RWR WAAP W+ + W R R+R A S W Sbjct: 12 RWREWAAPLWVGCNFSAWMRLLIRNRFAVHHSRW 45
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -3 Query: 315 HHQEGSHPGAAHHRHRPGVHQQGQQLET 232 HHQ H HH H+ HQQ QQ +T Sbjct: 302 HHQPHHHHHHHHHHHQHHNHQQQQQQQT 329
>Y2392_ARCFU (O30279) Hypothetical protein AF2392| Length = 86 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Frame = +2 Query: 278 WWAAPGWLPSWWCRWHRKRSRTAAPPSAWPHCRRW---SRPW 394 WW PGW W W+R T P W CR W PW Sbjct: 3 WWM-PGWGGRGWRWWYR---ATGLP--GWMRCRWWGYRDHPW 38 Score = 29.3 bits (64), Expect = 2.3 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%) Frame = +2 Query: 272 WRWWAAPGWLPSWW-CRW 322 WRWW LP W CRW Sbjct: 13 WRWWYRATGLPGWMRCRW 30
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -3 Query: 315 HHQEGSHPGAAHHRHRPGVHQQGQQLETPCVAPSGLNL 202 HH G H HH H HQQ Q ++P + +++ Sbjct: 531 HHHLGHHHMGHHHHHHHQHHQQQPQQQSPAATNAPISV 568
>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)| (ATP-dependent helicase CHD8) (CHD-8) (Helicase with SNF2 domain 1) Length = 2302 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -3 Query: 315 HHQEGSHPGAAHHRHRPGVHQQGQQLETPCVAPSGLNLR 199 HH HP HH H PG+ G +P SG LR Sbjct: 2215 HHHHHPHPHH-HHHHHPGLRAPGYP-SSPVTTASGTTLR 2251
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 339 LERLRCHLHHQ--EGSHPGAAHHRHRPGVHQQGQQLETPCVAPS 214 L++L H HH + H + HH P + QQ QQ + VA S Sbjct: 28 LQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHAVVASS 71
>BRAT_DROME (Q8MQJ9) Brain tumor protein| Length = 1037 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -3 Query: 321 HLHHQEGSHPGAAHHRHRPGVHQQGQQLETPCVAPSGLNLRG 196 H HHQ+ H G HH H H Q Q ++ + GL L G Sbjct: 580 HGHHQQSHHHG--HHNHHQTAHHQQLQAQS-SLHGLGLGLSG 618
>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;| Saposin B; Saposin C; Saposin D] Length = 518 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 296 WLPSWWCRWHRKRSRTAAPPSAWPHCRR 379 W P +WC K TAA +A HCRR Sbjct: 491 WGPGYWC----KNMETAAQCNAVDHCRR 514
>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B-Val; Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta- Length = 524 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 296 WLPSWWCRWHRKRSRTAAPPSAWPHCRR 379 W PS+WC + + TAA +A HC+R Sbjct: 497 WGPSYWC----QNTETAAQCNAVEHCKR 520
>MCEL_SFVKA (P25950) mRNA capping enzyme large subunit [Includes:| Polynucleotide 5'-triphosphatase (EC 3.1.3.33) (mRNA 5'-triphosphatase) (TPase); mRNA guanylyltransferase (EC 2.7.7.50) (GTP--RNA guanylyltransferase) (GTase)] Length = 836 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 182 FIIRYELSFSSCVSV*PRGRLIKSKHVW*FWLLSL 78 + IRY+ +F S SV G +K +VW +L+ L Sbjct: 280 YTIRYDTTFESNESVTLYGEAVKQNNVWQIYLIKL 314
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 6/29 (20%) Frame = -3 Query: 324 CHLHH------QEGSHPGAAHHRHRPGVH 256 CH HH Q G+ HH H PG H Sbjct: 510 CHHHHHHRRRRQRHRRRGSHHHHHHPGRH 538
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/36 (33%), Positives = 12/36 (33%) Frame = -3 Query: 321 HLHHQEGSHPGAAHHRHRPGVHQQGQQLETPCVAPS 214 H HH H HH H V Q APS Sbjct: 130 HAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPS 165
>AROF_TOBAC (P27608) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) Length = 542 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 318 LHHQEGSHPGAAHHRHRPGVHQQGQQLETPCVAPS 214 +H QEGSHPG H + GQ + T C+ S Sbjct: 466 VHEQEGSHPGGVH------LEMTGQNV-TECIGGS 493
>SCRK_ECOLI (P40713) Fructokinase (EC 2.7.1.4)| Length = 307 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 371 NEAKLREVLQFSNACGAICTTKKGAI 294 +E ++R ++ + CGA+ T KGA+ Sbjct: 269 DEREMRRIIDLAQRCGALAVTAKGAM 294 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,030,363 Number of Sequences: 219361 Number of extensions: 899373 Number of successful extensions: 2627 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2361 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2590 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
