ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POT4_ARATH (Q9LD18) Potassium transporter 4 (AtPOT4) (AtKUP3) (A... 32 1.1
2FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3) 30 3.2
3RAB6A_CAEEL (P34213) Ras-related protein Rab-6.1 30 4.2
4KU86_HUMAN (P13010) ATP-dependent DNA helicase 2 subunit 2 (EC 3... 29 5.5
5TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box tran... 29 5.5
6PHR_NEUCR (P27526) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.... 29 7.2
7ADA2B_ELEMA (O19014) Alpha-2B adrenergic receptor (Alpha-2B adre... 28 9.4

>POT4_ARATH (Q9LD18) Potassium transporter 4 (AtPOT4) (AtKUP3) (AtKT4)|
          Length = 789

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 243 HGVRALHIIEFVGVNGGFGWIDVCFCQIT*NDLSTFLIDTGRFTGAPLFSYFSVQVGP 70
           H V  L+II+F  V G  GWI +    ++         + G FT   +   F+V V P
Sbjct: 252 HAVSPLYIIKFFRVTGQDGWISLGGVLLSVTGTEAMFANLGHFTSVSIRVAFAVVVYP 309



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>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)|
          Length = 581

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 232 STPYYRVCRCEWWLRVD*CMFLSDHLK 152
           +T Y  +C   WWL    C +LS H K
Sbjct: 323 TTSYLSLCAASWWLIFALCFYLSSHKK 349



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>RAB6A_CAEEL (P34213) Ras-related protein Rab-6.1|
          Length = 205

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +1

Query: 127 IYQKGGKVISSDLTKTYINPPEATIHTYKLDNMECSHSVTELAFDIRVVRPCNLFAAVVG 306
           ++   G+     L  +YI      +  Y + N    H  T+   D+R  R C++   +VG
Sbjct: 64  LWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVG 123



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>KU86_HUMAN (P13010) ATP-dependent DNA helicase 2 subunit 2 (EC 3.6.1.-)|
           (ATP-dependent DNA helicase II 80 kDa subunit) (Lupus Ku
           autoantigen protein p86) (Ku86) (Ku80) (86 kDa subunit
           of Ku antigen) (Thyroid-lupus autoantigen) (TLAA) (CTC
           box-binding fac
          Length = 731

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 137 KVERSFQVI*QKHTSIHPKPPFTPTNSIIWSALTP 241
           + +R FQ +   H ++HP+ P  P    IW+ L P
Sbjct: 485 RFQRLFQCL--LHRALHPREPLPPIQQHIWNMLNP 517



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>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription|
           factor 3) (TCF-3) (mTCF-3)
          Length = 584

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -1

Query: 364 PVIPPSDLHFSQARPPTRKAPLRRQTSYRDGPP*CQRLAPSRSESTPYY 218
           P+I  S+ HFS A PPT  +P   +   + G P      P  SE +PYY
Sbjct: 190 PLITYSNDHFSPASPPTHLSP---EIDPKTGIP----RPPHPSELSPYY 231



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>PHR_NEUCR (P27526) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 642

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 361 VIPPSDLHF---SQARPPTRKAPLRRQTSYRDGPP*CQRLAPSRSESTP 224
           V PP+ LHF   +   P  RKA    QTS+ +G P   +   + +++ P
Sbjct: 14  VFPPTSLHFKLKTTMAPSKRKASAPPQTSHVNGNPSADKKRKTTTDAPP 62



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>ADA2B_ELEMA (O19014) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 384

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 368 RSGDPAVRPPLLAGPAAYQKSPTTAAN 288
           R G+P    PL AGP+A   SPT A++
Sbjct: 201 REGEPKQPHPLPAGPSALANSPTLASS 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,352,257
Number of Sequences: 219361
Number of extensions: 1401301
Number of successful extensions: 3620
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3619
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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