ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009563.1| Triticum aestivum clone wre1n.pk0006.h12:fis, full insert mRNA sequence Length = 577 Score = 99.6 bits (50), Expect = 8e-18 Identities = 191/238 (80%) Strand = Plus / Minus Query: 248 acgccgccgacctggttcacctccagcccggtgagcgtctcgaagctgcacatcctcgcc 307 ||||||||||||| ||||||| ||| | ||| ||| |||| |||||||||| | | || Sbjct: 287 acgccgccgacctaattcacctgcaggctggtaagcatctcaaagctgcacagtcgcacc 228 Query: 308 acctcctcggccacgccggagcgctcctcctcctcgctcagcggcacgccgaggaacccc 367 ||||||| || || ||||||| |||||| |||| | ||||||| || |||||||| | Sbjct: 227 acctcctgagcaacaccggagctctcctcatccttggtcagcgggacaccgaggaatttc 168 Query: 368 gcgagcctcctcaccacccgcgccgggtccgacttgatctcctcgtacctgaggaagagg 427 || ||| |||||||| | || |||| || ||||||||||| || ||| | ||||| || Sbjct: 167 gccagcttcctcaccgcatgcaccggatcggacttgatctcttcatactttaggaaaaga 108 Query: 428 acggcgtccggcctcgccacgctctcctcccagtactccaggcagtggtcccagaagg 485 || ||||||||| |||||||||||| ||||||||| |||||||| |||||||||| Sbjct: 107 acattgtccggccttgccacgctctccctccagtactcaaggcagtgatcccagaagg 50 Score = 50.1 bits (25), Expect = 0.007 Identities = 75/92 (81%) Strand = Plus / Minus Query: 122 agcttgtcctggacgatgcggtcgagcttgtccgccatctcgcggctcatgtggttggcc 181 ||||||| |||||||||||||| | || ||| ||||||| ||||||| ||||| ||| Sbjct: 413 agcttgtgttggacgatgcggtccaactcctcccccatctcctggctcatatggtttgcc 354 Query: 182 cagtccccgacctcgcctttcctgtagaacac 213 ||||||| || || ||||| ||||| ||||| Sbjct: 353 cagtcccntacttctccttttctgtaaaacac 322
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 388 cgccgggtccgacttgatctcctcgtacctgaggaagag 426 |||||||||| ||| ||||||||||||||||||||||| Sbjct: 24908867 cgccgggtcccgcttcatctcctcgtacctgaggaagag 24908905
>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0530H05 Length = 145952 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 388 cgccgggtccgacttgatctcctcgtacctgaggaagag 426 |||||||||| ||| ||||||||||||||||||||||| Sbjct: 3422 cgccgggtcccgcttcatctcctcgtacctgaggaagag 3460
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 388 cgccgggtccgacttgatctcctcgtacctgaggaagag 426 |||||||||| ||| ||||||||||||||||||||||| Sbjct: 119950 cgccgggtcccgcttcatctcctcgtacctgaggaagag 119988
>dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full insert sequence Length = 1274 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 388 cgccgggtccgacttgatctcctcgtacctgaggaagag 426 |||||||||| ||| ||||||||||||||||||||||| Sbjct: 815 cgccgggtcccgcttcatctcctcgtacctgaggaagag 777
>ref|NM_188988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 999 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 285 tctcgaagctgcacatcctcgccacctcctcggccacgccgg 326 ||||||||||||||| |||| ||||||||||| | ||||||| Sbjct: 805 tctcgaagctgcacagcctcaccacctcctcgacgacgccgg 764
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 285 tctcgaagctgcacatcctcgccacctcctcggccacgccgg 326 ||||||||||||||| |||| ||||||||||| | ||||||| Sbjct: 25557395 tctcgaagctgcacagcctcaccacctcctcgacgacgccgg 25557436 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 285 tctcgaagctgcacatcctcgccacctcctcggccacgccgg 326 ||||||||||||||| |||| | ||||||||| | ||||||| Sbjct: 25527711 tctcgaagctgcacagcctcacaacctcctcgacgacgccgg 25527752 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 181 ccagtccccgacctcgcctttcctgtagaacaccgagttctc 222 |||||||||||| || ||||| ||| | |||||||||||||| Sbjct: 25527607 ccagtccccgacttcaccttttctgaaaaacaccgagttctc 25527648
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 285 tctcgaagctgcacatcctcgccacctcctcggccacgccgg 326 ||||||||||||||| |||| ||||||||||| | ||||||| Sbjct: 44086 tctcgaagctgcacagcctcaccacctcctcgacgacgccgg 44127 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 285 tctcgaagctgcacatcctcgccacctcctcggccacgccgg 326 ||||||||||||||| |||| | ||||||||| | ||||||| Sbjct: 14402 tctcgaagctgcacagcctcacaacctcctcgacgacgccgg 14443 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 181 ccagtccccgacctcgcctttcctgtagaacaccgagttctc 222 |||||||||||| || ||||| ||| | |||||||||||||| Sbjct: 14298 ccagtccccgacttcaccttttctgaaaaacaccgagttctc 14339
>ref|XM_473241.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 |||||||||||||||| ||||||||| Sbjct: 725 atctcctcgtacctgaagaagaggac 700
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 ||||||||||||| |||||||||||| Sbjct: 116399 atctcctcgtaccggaggaagaggac 116374
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 ||||||||||||| |||||||||||| Sbjct: 142392 atctcctcgtaccggaggaagaggac 142367
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 gctcagcggcacgccgaggaac 364 |||||||||||||||||||||| Sbjct: 236910 gctcagcggcacgccgaggaac 236889
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 |||||||||||||||| ||||||||| Sbjct: 71192 atctcctcgtacctgaagaagaggac 71167
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 |||||||||||||||| ||||||||| Sbjct: 26294615 atctcctcgtacctgaagaagaggac 26294590
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 317 gccacgccggagcgctcctcctcctc 342 ||||||||||||| |||||||||||| Sbjct: 21475153 gccacgccggagccctcctcctcctc 21475178
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 ||||||||||||| |||||||||||| Sbjct: 17387617 atctcctcgtaccggaggaagaggac 17387592
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/45 (88%), Gaps = 2/45 (4%) Strand = Plus / Plus Query: 302 ctcgccacctcctcggccacgccggag--cgctcctcctcctcgc 344 ||||||||||||||| || |||||| | |||||||||||||||| Sbjct: 12708014 ctcgccacctcctcgaccccgccggcgtccgctcctcctcctcgc 12708058
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/45 (88%), Gaps = 2/45 (4%) Strand = Plus / Plus Query: 302 ctcgccacctcctcggccacgccggag--cgctcctcctcctcgc 344 ||||||||||||||| || |||||| | |||||||||||||||| Sbjct: 75043 ctcgccacctcctcgaccccgccggcgtccgctcctcctcctcgc 75087
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 285 tctcgaagctgcacatcctcgccacctcctcggccacgccgg 326 ||||||||||||||| |||| | ||||||||| | ||||||| Sbjct: 159027 tctcgaagctgcacagcctcacaacctcctcgacgacgccgg 159068 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Plus Query: 181 ccagtccccgacctcgcctttcctgtagaacaccgagttctc 222 |||||||||||| || ||||| ||| | |||||||||||||| Sbjct: 158923 ccagtccccgacttcaccttttctgaaaaacaccgagttctc 158964
>dbj|AK067402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106G16, full insert sequence Length = 2238 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 317 gccacgccggagcgctcctcctcctc 342 ||||||||||||| |||||||||||| Sbjct: 63 gccacgccggagccctcctcctcctc 88
>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence Length = 1222 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 ||||||||||||| |||||||||||| Sbjct: 843 atctcctcgtaccggaggaagaggac 818
>emb|BX629359.1|CNS09SBT Tetraodon nigroviridis BAC sequence Length = 139693 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 312 cctcggccacgccggagcgctcctcc 337 |||||||||||||| ||||||||||| Sbjct: 22054 cctcggccacgccgcagcgctcctcc 22079
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 404 atctcctcgtacctgaggaagaggac 429 ||||||||||||| |||||||||||| Sbjct: 17481327 atctcctcgtaccggaggaagaggac 17481302
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 317 gccacgccggagcgctcctcctcctc 342 ||||||||||||| |||||||||||| Sbjct: 21403474 gccacgccggagccctcctcctcctc 21403499
>dbj|D78587.1| Balanus amphitrite gene for G protein-coupled receptor, complete cds Length = 3562 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 349 cggcacgccgaggaaccccgcgagcc 374 |||||||||||||| ||||||||||| Sbjct: 2162 cggcacgccgaggagccccgcgagcc 2137
>dbj|D78363.1| Barnacle gene for G protein-coupled receptor Length = 1431 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 349 cggcacgccgaggaaccccgcgagcc 374 |||||||||||||| ||||||||||| Sbjct: 566 cggcacgccgaggagccccgcgagcc 541
>gb|AC166992.2| Mus musculus BAC clone RP24-144F18 from chromosome 9, complete sequence Length = 193799 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ctgacccctgcagcttgtcct 131 ||||||||||||||||||||| Sbjct: 2291 ctgacccctgcagcttgtcct 2271
>gb|AC161371.4| Mus musculus BAC clone RP23-402N3 from chromosome 9, complete sequence Length = 203708 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 ctgacccctgcagcttgtcct 131 ||||||||||||||||||||| Sbjct: 50072 ctgacccctgcagcttgtcct 50092
>emb|AL603751.4| Human DNA sequence from clone RP11-84D2 on chromosome 6, complete sequence Length = 33473 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 agagcagagtggaaaagacca 81 ||||||||||||||||||||| Sbjct: 11077 agagcagagtggaaaagacca 11097
>ref|XM_962354.1| PREDICTED: Tribolium castaneum similar to CG10465-PA (LOC655793), mRNA Length = 1489 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 ccggagcgctcctcctcctcg 343 ||||||||||||||||||||| Sbjct: 908 ccggagcgctcctcctcctcg 888
>gb|AF163765.1|AF163765 Allochromatium vinosum putative transcriptional regulator CysB (cysB) gene, partial cds; hydrogen sulfide:ferredoxin oxidoreductase (cysI), APS reductase (cysH), putative ATP sulfurylase small subunit (cysD), and putative ATP sulfurylase large subunit (cysN) genes, complete cds; and putative selenophosphate synthase (selD) gene, partial cds Length = 5693 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 tggctgacgccgccgacctgg 262 ||||||||||||||||||||| Sbjct: 4504 tggctgacgccgccgacctgg 4484
>gb|AC132126.3| Mus musculus BAC clone RP23-400E10 from 8, complete sequence Length = 204800 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ctgacccctgcagcttgtcct 131 ||||||||||||||||||||| Sbjct: 49862 ctgacccctgcagcttgtcct 49842
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tcacctccagcccggtgagc 283 |||||||||||||||||||| Sbjct: 699917 tcacctccagcccggtgagc 699936
>ref|NM_184769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 360 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cgccggagcgctcctcctcctcgc 344 |||||| ||||||||||||||||| Sbjct: 108 cgccggcgcgctcctcctcctcgc 131
>gb|BC053286.1| Danio rerio MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae), mRNA (cDNA clone MGC:64157 IMAGE:6797204), complete cds Length = 2467 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tcctcctcctcgctcagcgg 351 |||||||||||||||||||| Sbjct: 1995 tcctcctcctcgctcagcgg 2014
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cggcacgccgaggaaccccg 368 |||||||||||||||||||| Sbjct: 2602052 cggcacgccgaggaaccccg 2602033
>gb|AY564125.1| Phytophthora humicola isolate IMI302303 translation elongation factor 1 alpha (EF-1alpha) gene, partial cds Length = 930 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tccgacttgatctcctcgta 414 |||||||||||||||||||| Sbjct: 287 tccgacttgatctcctcgta 268
>gb|AY564111.1| Phytophthora citricola isolate P1817 translation elongation factor 1 alpha (EF-1alpha) gene, partial cds Length = 930 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tccgacttgatctcctcgta 414 |||||||||||||||||||| Sbjct: 287 tccgacttgatctcctcgta 268
>ref|XM_324221.1| Neurospora crassa OR74A hypothetical protein (NCU04865.1) partial mRNA Length = 7725 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gcgctcctcctcctcgctca 347 |||||||||||||||||||| Sbjct: 4785 gcgctcctcctcctcgctca 4766
>ref|XM_953474.1| Neurospora crassa OR74A hypothetical protein (NCU09063.1) partial mRNA Length = 4935 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gcggtcgagcttgtccgcca 158 |||||||||||||||||||| Sbjct: 2403 gcggtcgagcttgtccgcca 2422
>ref|XM_954029.1| Neurospora crassa OR74A hypothetical protein (NCU04865.1) partial mRNA Length = 7725 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gcgctcctcctcctcgctca 347 |||||||||||||||||||| Sbjct: 4785 gcgctcctcctcctcgctca 4766
>ref|XM_331454.1| Neurospora crassa OR74A hypothetical protein (NCU09063.1) partial mRNA Length = 4935 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gcggtcgagcttgtccgcca 158 |||||||||||||||||||| Sbjct: 2403 gcggtcgagcttgtccgcca 2422
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cgccggagcgctcctcctcctcgc 344 |||||| ||||||||||||||||| Sbjct: 20368827 cgccggcgcgctcctcctcctcgc 20368804
>emb|BX511137.14| Zebrafish DNA sequence from clone DKEY-192A11 in linkage group 7, complete sequence Length = 214145 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 agtggaaaagaccacagata 87 |||||||||||||||||||| Sbjct: 28652 agtggaaaagaccacagata 28633
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 agataacagatgactcagaa 102 |||||||||||||||||||| Sbjct: 1554083 agataacagatgactcagaa 1554102
>ref|NM_199550.1| Danio rerio MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) (mak10), mRNA Length = 2467 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tcctcctcctcgctcagcgg 351 |||||||||||||||||||| Sbjct: 1995 tcctcctcctcgctcagcgg 2014
>gb|DQ399851.1| Phytophthora polonica isolate UASWS0199 translation elongation factor 1 alpha gene, partial cds Length = 936 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tccgacttgatctcctcgta 414 |||||||||||||||||||| Sbjct: 293 tccgacttgatctcctcgta 274
>gb|DQ399850.1| Phytophthora polonica isolate UASWS0198 translation elongation factor 1 alpha gene, partial cds Length = 936 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tccgacttgatctcctcgta 414 |||||||||||||||||||| Sbjct: 293 tccgacttgatctcctcgta 274
>gb|DQ399849.1| Phytophthora polonica isolate UASWS0197 translation elongation factor 1 alpha gene, partial cds Length = 936 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tccgacttgatctcctcgta 414 |||||||||||||||||||| Sbjct: 293 tccgacttgatctcctcgta 274
>gb|AC090791.6| Homo sapiens chromosome 11, clone RP11-466I1, complete sequence Length = 172865 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ttcccaaaattaaaccacaa 53 |||||||||||||||||||| Sbjct: 166640 ttcccaaaattaaaccacaa 166659
>emb|CR391488.1| Gallus gallus finished cDNA, clone ChEST901b24 Length = 921 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 cgctcctcctcctcgctcag 348 |||||||||||||||||||| Sbjct: 518 cgctcctcctcctcgctcag 499
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cgccggagcgctcctcctcctcgc 344 |||||| ||||||||||||||||| Sbjct: 20361856 cgccggcgcgctcctcctcctcgc 20361833
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cgccggagcgctcctcctcctcgc 344 |||||| ||||||||||||||||| Sbjct: 13127 cgccggcgcgctcctcctcctcgc 13104
>emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in linkage group 15, complete sequence Length = 229061 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 acagcaggcctgacccctgc 121 |||||||||||||||||||| Sbjct: 199942 acagcaggcctgacccctgc 199923
>dbj|AK058939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G05, full insert sequence Length = 795 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cgccggagcgctcctcctcctcgc 344 |||||| ||||||||||||||||| Sbjct: 332 cgccggcgcgctcctcctcctcgc 355
>emb|AJ238974.1|BLA238974 Branchiostoma lanceolatum partial amphipax1 gene, exons 1-2 and joined CDS Length = 2753 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 acgccgccgacctggttcacctcc 271 |||||||||| ||||||||||||| Sbjct: 2069 acgccgccgagctggttcacctcc 2046
>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete sequence Length = 198816 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 cctgtagaacaccgagttctcaac 225 |||||||||||| ||||||||||| Sbjct: 56122 cctgtagaacacagagttctcaac 56145
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 cgctcctcctcctcgctcag 348 |||||||||||||||||||| Sbjct: 2506241 cgctcctcctcctcgctcag 2506222 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,721,409 Number of Sequences: 3902068 Number of extensions: 4721409 Number of successful extensions: 90114 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 89372 Number of HSP's gapped (non-prelim): 741 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
