ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33d06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 65.9 bits (33), Expect = 1e-07 Identities = 165/209 (78%) Strand = Plus / Minus Query: 190 ggagttgaggttggtttggcgcagcttgcgctcctcggagagcctcttggcgaagcggac 249 |||||||||||||| ||||| ||| | ||||| ||||||||| ||||||||||||| | Sbjct: 74183 ggagttgaggttggcctggcgtagcctccgctcgtcggagagcatcttggcgaagcgcgc 74124 Query: 250 gagcgcctcttcattggtgccagcaccgtcgacggtctcatacatcccattgtcaatgtt 309 ||||| || || || ||||| | ||| |||||| ||| |||||||| |||| ||||| Sbjct: 74123 aagcgcgtcctcgtttgtgccctcgccggcgacgggctcgtacatccccgtgtcgatgtt 74064 Query: 310 tacccgggatacggtcttggtgagcagattcttaccgatcccaataagcgcctccatgtt 369 || | | || | ||| | || || ||||| ||||||||||| || ||||||||||| Sbjct: 74063 cactctcgccaccggcttcttcagaagcttcttcccgatcccaatcagtgcctccatgtt 74004 Query: 370 ctctttggtggcgatatccaccgaggacg 398 ||| || || ||||| |||||||| |||| Sbjct: 74003 ctccttcgtcgcgatgtccaccgacgacg 73975 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 450 ggagggcctcaaataggacggcggcgtggatgtcgaccatgtcggcgct 498 |||||||||| || || |||||||| ||||||||||||||||||||||| Sbjct: 73792 ggagggcctcgaagagcacggcggcatggatgtcgaccatgtcggcgct 73744 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 344 ccgatcccaataagcgcctccatgttctctttggtggcgatatccac 390 ||||||||||| || | |||||||||||| ||||| ||||| ||||| Sbjct: 41867 ccgatcccaatcagagactccatgttctccttggtcgcgatgtccac 41913 Score = 44.1 bits (22), Expect = 0.44 Identities = 52/62 (83%) Strand = Plus / Minus Query: 431 aggtagttctcctcaatgcggagggcctcaaataggacggcggcgtggatgtcgaccatg 490 |||||||||| |||| | | ||||||||||| || ||||| || |||||||| |||||| Sbjct: 57485 aggtagttcttctcacagtgcagggcctcaaagagcacggccgcatggatgtcaaccatg 57426 Query: 491 tc 492 || Sbjct: 57425 tc 57424
>dbj|AK058531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A08, full insert sequence Length = 1618 Score = 60.0 bits (30), Expect = 7e-06 Identities = 117/146 (80%) Strand = Plus / Minus Query: 359 gcctccatgttctctttggtggcgatatccaccgaggacgtttgccccgtgagcgagtcg 418 |||||||||||||| || || ||||| |||||||| ||||| |||||| ||||| ||| Sbjct: 1272 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccctccagcgaatcg 1213 Query: 419 tcctggatgcgcaggtagttctcctcaatgcggagggcctcaaataggacggcggcgtgg 478 ||||| || || |||||| ||| ||| || ||| | || || || |||| |||||| Sbjct: 1212 tcctgaatacggaggtagctcttctcgcagcagagagactggaagagaacggacgcgtgg 1153 Query: 479 atgtcgaccatgtcggcgctagcatg 504 |||||||||||||| || |||||||| Sbjct: 1152 atgtcgaccatgtcagcactagcatg 1127
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 344 ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 403 |||||||| || || |||||||||||||| | || |||||||||||||| ||||| ||| Sbjct: 22459 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 22400 Query: 404 ccc 406 ||| Sbjct: 22399 ccc 22397 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 359 gcctccatgttctctttggtggcgatatccaccgaggacgtttgcccc 406 |||||||||||||| || || ||||| |||||||| ||||| |||||| Sbjct: 10141 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccc 10094 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 473 gcgtggatgtcgaccatgtcggcgctagcatg 504 |||||||||||||||||||| || |||||||| Sbjct: 9377 gcgtggatgtcgaccatgtcagcactagcatg 9346
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 344 ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 403 |||||||| || || |||||||||||||| | || |||||||||||||| ||||| ||| Sbjct: 23006456 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 23006397 Query: 404 ccc 406 ||| Sbjct: 23006396 ccc 23006394 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 359 gcctccatgttctctttggtggcgatatccaccgaggacgtttgcccc 406 |||||||||||||| || || ||||| |||||||| ||||| |||||| Sbjct: 22994138 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccc 22994091 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 473 gcgtggatgtcgaccatgtcggcgctagcatg 504 |||||||||||||||||||| || |||||||| Sbjct: 22993374 gcgtggatgtcgaccatgtcagcactagcatg 22993343
>dbj|AK067827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120O20, full insert sequence Length = 2434 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 344 ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 403 |||||||| || || |||||||||||||| | || |||||||||||||| ||||| ||| Sbjct: 2050 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 1991 Query: 404 ccc 406 ||| Sbjct: 1990 ccc 1988
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 344 ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 403 |||||||| || || |||||||||||||| | || |||||||||||||| ||||| ||| Sbjct: 23316366 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 23316307 Query: 404 ccc 406 ||| Sbjct: 23316306 ccc 23316304 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 359 gcctccatgttctctttggtggcgatatccaccgaggacgtttgcccc 406 |||||||||||||| || || ||||| |||||||| ||||| |||||| Sbjct: 23304048 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccc 23304001 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 473 gcgtggatgtcgaccatgtcggcgctagcatg 504 |||||||||||||||||||| || |||||||| Sbjct: 23303284 gcgtggatgtcgaccatgtcagcactagcatg 23303253
>gb|AC154479.2| Mus musculus BAC clone RP24-135I6 from chromosome 9, complete sequence Length = 153964 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 162 ttcttcgtctctcttctcttctct 185 |||||||||||||||||||||||| Sbjct: 73555 ttcttcgtctctcttctcttctct 73578
>ref|XM_470838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1450 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gacggcggcgtggatgtcgac 486 ||||||||||||||||||||| Sbjct: 978 gacggcggcgtggatgtcgac 958
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gacggcggcgtggatgtcgac 486 ||||||||||||||||||||| Sbjct: 15676131 gacggcggcgtggatgtcgac 15676111
>ref|XM_389356.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09180.1) partial mRNA Length = 1878 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 ggatgtcgaccatgtcggcgc 497 ||||||||||||||||||||| Sbjct: 1613 ggatgtcgaccatgtcggcgc 1633
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence Length = 148353 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 tctctcttctcttctctacttggag 193 ||||||||||||||||||| ||||| Sbjct: 44129 tctctcttctcttctctacgtggag 44153
>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete sequence Length = 178748 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gacggcggcgtggatgtcgac 486 ||||||||||||||||||||| Sbjct: 86085 gacggcggcgtggatgtcgac 86065
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 tctctcttctcttctctacttggag 193 ||||||||||||||||||| ||||| Sbjct: 18462774 tctctcttctcttctctacgtggag 18462798
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 cgtggatgtcgaccatgtcgg 494 ||||||||||||||||||||| Sbjct: 22360034 cgtggatgtcgaccatgtcgg 22360054 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gtggatgtcgaccatgtcgg 494 |||||||||||||||||||| Sbjct: 22406918 gtggatgtcgaccatgtcgg 22406899
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gacggcggcgtggatgtcgac 486 ||||||||||||||||||||| Sbjct: 15670665 gacggcggcgtggatgtcgac 15670645
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 tctctcttctcttctctactt 189 ||||||||||||||||||||| Sbjct: 7088983 tctctcttctcttctctactt 7089003 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tctctcttctcttctctact 188 |||||||||||||||||||| Sbjct: 19662657 tctctcttctcttctctact 19662638
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 tctctcttctcttctctactt 189 ||||||||||||||||||||| Sbjct: 92402 tctctcttctcttctctactt 92422
>dbj|AK069809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030J03, full insert sequence Length = 1526 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gacggcggcgtggatgtcgac 486 ||||||||||||||||||||| Sbjct: 1051 gacggcggcgtggatgtcgac 1031
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 cgtggatgtcgaccatgtcgg 494 ||||||||||||||||||||| Sbjct: 22288379 cgtggatgtcgaccatgtcgg 22288399 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gtggatgtcgaccatgtcgg 494 |||||||||||||||||||| Sbjct: 22335263 gtggatgtcgaccatgtcgg 22335244
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109610 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 cgtggatgtcgaccatgtcgg 494 ||||||||||||||||||||| Sbjct: 1720 cgtggatgtcgaccatgtcgg 1700
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 cgtggatgtcgaccatgtcgg 494 ||||||||||||||||||||| Sbjct: 147500 cgtggatgtcgaccatgtcgg 147480 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gtggatgtcgaccatgtcgg 494 |||||||||||||||||||| Sbjct: 100616 gtggatgtcgaccatgtcgg 100635
>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence Length = 138057 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tggacaacatacatctttat 28 |||||||||||||||||||| Sbjct: 29313 tggacaacatacatctttat 29294
>gb|AC102081.15| Mus musculus chromosome 18, clone RP23-43H5, complete sequence Length = 245125 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 tcttctcttctctacttggagttg 196 |||||||||||||| ||||||||| Sbjct: 9753 tcttctcttctctagttggagttg 9730
>ref|XM_482944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1701 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 467 acggcggcgtggatgtcgaccatgtcggcgct 498 |||| ||||||||||||||| | ||||||||| Sbjct: 1192 acggaggcgtggatgtcgacgaggtcggcgct 1161
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 1156231 tcgtctctcttctcttctct 1156212
>gb|AF252279.1| Homo sapiens SCA8 gene, partial sequence; and Kelch-like 1 protein (KLHL1) gene, partial cds Length = 166350 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aatcataaaccataattatt 106 |||||||||||||||||||| Sbjct: 155480 aatcataaaccataattatt 155461
>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence Length = 165247 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tggacaacatacatctttat 28 |||||||||||||||||||| Sbjct: 3647 tggacaacatacatctttat 3666
>ref|XM_368543.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00701.4) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 471 cggcgtggatgtcgaccatgtcgg 494 |||||||||||||| ||||||||| Sbjct: 791 cggcgtggatgtcgtccatgtcgg 814
>gb|DQ125486.1| Toxoplasma gondii structural maintenance of chromosome 2 (SMC2) gene, complete cds Length = 18600 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cttcttcgtctctcttctct 180 |||||||||||||||||||| Sbjct: 4108 cttcttcgtctctcttctct 4127
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 409 gagcgagtcgtcctggatgcgcaggtag 436 ||||| |||||||||||||||| ||||| Sbjct: 3322205 gagcgcgtcgtcctggatgcgctggtag 3322178
>gb|AC091637.1| Pan troglodytes clone RP43-176G10, complete sequence Length = 51190 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 18933 tcgtctctcttctcttctct 18914
>gb|AC164304.2| Mus musculus BAC clone RP23-261B24 from chromosome 14, complete sequence Length = 184690 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 161 cttcttcgtctctcttctcttctctact 188 |||||| ||||| ||||||||||||||| Sbjct: 123572 cttcttggtctcacttctcttctctact 123599
>gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complete sequence Length = 155881 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 15403 tcgtctctcttctcttctct 15384
>gb|AC139757.4| Mus musculus BAC clone RP23-440H11 from chromosome 18, complete sequence Length = 193847 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 tcttctcttctctacttggagttg 196 |||||||||||||| ||||||||| Sbjct: 149059 tcttctcttctctagttggagttg 149036
>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence Length = 182261 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 ataaaccataattattaaagtaac 114 |||||| ||||||||||||||||| Sbjct: 68750 ataaacaataattattaaagtaac 68727
>gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, complete sequence Length = 184032 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 160377 tcgtctctcttctcttctct 160358
>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence Length = 198453 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tacatcccattgtcaatgtt 309 |||||||||||||||||||| Sbjct: 169133 tacatcccattgtcaatgtt 169114
>emb|AL590554.7| Human DNA sequence from clone RP11-99O6 on chromosome 13, complete sequence Length = 97790 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aatcataaaccataattatt 106 |||||||||||||||||||| Sbjct: 33031 aatcataaaccataattatt 33050
>emb|AL161420.10| Human DNA sequence from clone RP11-155N3 on chromosome 13 Contains the 3' end of the gene for zizimin1 (KIAA1058) and a novel gene, complete sequence Length = 163316 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ggagttgaggttggtttggc 209 |||||||||||||||||||| Sbjct: 94703 ggagttgaggttggtttggc 94684
>emb|AL137125.7| Human DNA sequence from clone RP11-175E13 on chromosome 9p23-24.3 Contains part of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 92384 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 162 ttcttcgtctctcttctcttctct 185 |||||| ||||||||||||||||| Sbjct: 12746 ttcttcttctctcttctcttctct 12769
>emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chromosome 11, complete sequence Length = 193528 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ttcttcgtctctcttctcttctct 185 |||||| ||||||||||||||||| Sbjct: 111070 ttcttcttctctcttctcttctct 111047
>emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 in linkage group 20 Contains the gene for a novel protein similar to vertebrate fibronectin type III domain containing 1 (FNDC1), the 5' end of the gene for a novel protein similar to vertebrate otoferlin (OTOF), a novel gene and two CpG islands, complete sequence Length = 163523 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 58942 tcgtctctcttctcttctct 58961
>gb|AC015563.11| Homo sapiens chromosome 18, clone RP11-344B2, complete sequence Length = 214984 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 tctctcttctcttctctacttgga 192 ||||| |||||||||||||||||| Sbjct: 44813 tctctgttctcttctctacttgga 44836
>gb|AC011825.13| Homo sapiens chromosome 18, clone RP11-53I6, complete sequence Length = 176222 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 tctctcttctcttctctacttgga 192 ||||| |||||||||||||||||| Sbjct: 136657 tctctgttctcttctctacttgga 136680
>gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213550 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ctctcttctcttctctactt 189 |||||||||||||||||||| Sbjct: 71523 ctctcttctcttctctactt 71542
>gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9f22, complete sequence Length = 120423 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 162 ttcttcgtctctcttctcttctct 185 |||||| ||||||||||||||||| Sbjct: 13700 ttcttcttctctcttctcttctct 13723
>gb|AC159019.4| Pan troglodytes BAC clone CH251-550K12 from chromosome unknown, complete sequence Length = 196429 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caagtggacaacatacatctttat 28 ||||| |||||||||||||||||| Sbjct: 104225 caagttgacaacatacatctttat 104202
>gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191825 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctctcttctcttctctactt 189 |||||||||||||||||||| Sbjct: 32265 ctctcttctcttctctactt 32246
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 467 acggcggcgtggatgtcgaccatgtcggcgct 498 |||| ||||||||||||||| | ||||||||| Sbjct: 23496227 acggaggcgtggatgtcgacgaggtcggcgct 23496258
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 1069048 tcgtctctcttctcttctct 1069029
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 1045310 tcgtctctcttctcttctct 1045291
>gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosome 14, complete sequence Length = 182146 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tctcttctcttctctacttg 190 |||||||||||||||||||| Sbjct: 122252 tctcttctcttctctacttg 122233
>dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene cluster (Padi2, Padi1, Padi23, Padi4, Padi6), complete cds Length = 240498 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 37966 tcgtctctcttctcttctct 37985
>gb|AC055863.16| Homo sapiens chromosome 17, clone RP11-478P5, complete sequence Length = 152348 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cttcgtctctcttctcttct 183 |||||||||||||||||||| Sbjct: 118860 cttcgtctctcttctcttct 118879
>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence Length = 114738 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcttcgtctctcttctcttc 182 |||||||||||||||||||| Sbjct: 107501 tcttcgtctctcttctcttc 107520
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tctctcttctcttctctact 188 |||||||||||||||||||| Sbjct: 19415 tctctcttctcttctctact 19396
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tctctcttctcttctctact 188 |||||||||||||||||||| Sbjct: 128943 tctctcttctcttctctact 128924
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 467 acggcggcgtggatgtcgaccatgtcggcgct 498 |||| ||||||||||||||| | ||||||||| Sbjct: 87642 acggaggcgtggatgtcgacgaggtcggcgct 87673
>dbj|AK108679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B01, full insert sequence Length = 1701 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 467 acggcggcgtggatgtcgaccatgtcggcgct 498 |||| ||||||||||||||| | ||||||||| Sbjct: 1192 acggaggcgtggatgtcgacgaggtcggcgct 1161
>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence Length = 191211 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ataactaaaacaatcataaa 95 |||||||||||||||||||| Sbjct: 66284 ataactaaaacaatcataaa 66303
>emb|Z98200.9|HS111B22 Human DNA sequence from clone RP1-111B22 on chromosome 6q16-21 Contains a ribosomal protein L3 (RPL3) pseudogenee, the OSTM1 gene for osteopetrosis associated transmembrane, the 5' end of a novel gene and three CpG islands, complete sequence Length = 153382 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caagtggacaacatacatctttat 28 ||||| |||||||||||||||||| Sbjct: 133939 caagttgacaacatacatctttat 133916
>gb|AC154388.4| Mus musculus BAC clone RP23-14P7 from chromosome 14, complete sequence Length = 246800 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ttcttcgtctctcttctcttctct 185 |||||| ||||||||||||||||| Sbjct: 15949 ttcttcctctctcttctcttctct 15926
>emb|AL732617.24| Mouse DNA sequence from clone RP23-196C23 on chromosome 4, complete sequence Length = 226501 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 cttcttcgtctctcttctct 180 |||||||||||||||||||| Sbjct: 196434 cttcttcgtctctcttctct 196415
>emb|CT010520.15| Mouse DNA sequence from clone RP23-349A19 on chromosome 14, complete sequence Length = 175582 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 162 ttcttcgtctctcttctcttctct 185 |||||| ||||||||||||||||| Sbjct: 37063 ttcttcctctctcttctcttctct 37086
>emb|AL645625.15| Mouse DNA sequence from clone RP23-183L1 on chromosome 4, complete sequence Length = 226754 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcgtctctcttctcttctct 185 |||||||||||||||||||| Sbjct: 6275 tcgtctctcttctcttctct 6256
>emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on chromosome 15, complete sequence Length = 202342 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 tctctcttctcttctctact 188 |||||||||||||||||||| Sbjct: 34878 tctctcttctcttctctact 34897 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,974,425 Number of Sequences: 3902068 Number of extensions: 3974425 Number of successful extensions: 172249 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 171410 Number of HSP's gapped (non-prelim): 839 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
