ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016572.1| Zea mays clone Contig405 mRNA sequence 157 4e-35
2gb|AY110043.1| Zea mays CL5496_1 mRNA sequence 157 4e-35
3ref|XM_474393.1| Oryza sativa (japonica cultivar-group), predic... 135 2e-28
4ref|XM_474324.1| Oryza sativa (japonica cultivar-group), predic... 127 4e-26
5dbj|AK102124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
6emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4,... 101 2e-18
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
8emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 101 2e-18
9emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 101 2e-18
10emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4,... 94 5e-16
11emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 94 5e-16
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
13dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
14dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
15gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete... 44 0.46
16gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome... 44 0.46
17gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E... 44 0.46
18emb|BX072530.5| Zebrafish DNA sequence from clone DKEY-221K19, c... 44 0.46
19gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 ... 44 0.46
20emb|AL591598.8| Mouse DNA sequence from clone RP23-272C14 on chr... 44 0.46
21gb|AC108487.2| Homo sapiens chromosome 3 clone RP11-733E24, comp... 42 1.8
22gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, comple... 42 1.8
23gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182... 42 1.8
24gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region ... 42 1.8
25gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.8
26gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.1
27gb|AE006877.1| Sulfolobus solfataricus P2 section 236 of 272 of ... 40 7.1
28emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in... 40 7.1
29emb|AL845475.12| Mouse DNA sequence from clone RP23-403E20 on ch... 40 7.1
30emb|CR392032.9| Zebrafish DNA sequence from clone DKEYP-64A3 in ... 40 7.1
31gb|AC010501.7| Homo sapiens chromosome 5 clone CTD-2377O17, comp... 40 7.1
32emb|BX927382.9| Zebrafish DNA sequence from clone DKEY-168I13 in... 40 7.1
33dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 7.1
34gb|AC078993.20| Homo sapiens Xp BAC RP11-431J24 (Roswell Park Ca... 40 7.1
35dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
36gb|AC145938.4| Pan troglodytes BAC clone RP43-18H20 from chromos... 40 7.1
37gb|AC015987.6| Homo sapiens chromosome 7 clone RP11-207O19, comp... 40 7.1
38gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, co... 40 7.1
39gb|AC024083.3|AC024083 Homo sapiens chromosome 7 clone RP11-24I2... 40 7.1
40gb|AC116337.2| Homo sapiens chromosome 5 clone CTD-2503O16, comp... 40 7.1
41emb|BX537274.3| Zebrafish DNA sequence from clone DKEY-103L3 in ... 40 7.1
42dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
43dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
44dbj|AP000497.1| Homo sapiens genomic DNA, chromosome 3p21.3, clo... 40 7.1 
>gb|BT016572.1| Zea mays clone Contig405 mRNA sequence
          Length = 1144

 Score =  157 bits (79), Expect = 4e-35
 Identities = 190/227 (83%)
 Strand = Plus / Minus

                                                                       
Query: 297 catcatatgtcggctgagaggaagttatcagacaaggtaaccttctcgcccaacttgaac 356
           ||||||||||| || |  ||||||||  ||||||||| ||||||||||||   |||||| 
Sbjct: 824 catcatatgtcagcagcaaggaagttgccagacaaggaaaccttctcgccaggcttgaat 765

                                                                       
Query: 357 ggtgccaggcctctgtatgggcaggtgctgcatcggaacgcgtcgcccaacccacaactg 416
           ||||  || |||||||| || ||||| |  || ||||| || || |||||||||||||||
Sbjct: 764 ggtggaagacctctgtagggacaggttccacagcggaaggcatcacccaacccacaactg 705

                                                                       
Query: 417 ccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccaccttc 476
           ||||||||||||  |||||||| |||||| || ||||| ||| |||||||| | ||||||
Sbjct: 704 ccacaagctgactgagggttattgatctgctccgcagtgagctccagcttcccaaccttc 645

                                                          
Query: 477 tgctcagcctcagccctgccacaactgcagttcttgcatgccttctt 523
           | ||| |||||||||||||||||| | |||||||||||||| |||||
Sbjct: 644 tcctcggcctcagccctgccacaagtacagttcttgcatgctttctt 598
to top
>gb|AY110043.1| Zea mays CL5496_1 mRNA sequence
          Length = 1258

 Score =  157 bits (79), Expect = 4e-35
 Identities = 190/227 (83%)
 Strand = Plus / Minus

                                                                       
Query: 297 catcatatgtcggctgagaggaagttatcagacaaggtaaccttctcgcccaacttgaac 356
           ||||||||||| || |  ||||||||  ||||||||| ||||||||||||   |||||| 
Sbjct: 863 catcatatgtcagcagcaaggaagttgccagacaaggaaaccttctcgccaggcttgaat 804

                                                                       
Query: 357 ggtgccaggcctctgtatgggcaggtgctgcatcggaacgcgtcgcccaacccacaactg 416
           ||||  || |||||||| || ||||| |  || ||||| || || |||||||||||||||
Sbjct: 803 ggtggaagacctctgtagggacaggttccacagcggaaggcatcacccaacccacaactg 744

                                                                       
Query: 417 ccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccaccttc 476
           ||||||||||||  |||||||| |||||| || ||||| ||| |||||||| | ||||||
Sbjct: 743 ccacaagctgactgagggttattgatctgctccgcagtgagctccagcttcccaaccttc 684

                                                          
Query: 477 tgctcagcctcagccctgccacaactgcagttcttgcatgccttctt 523
           | ||| |||||||||||||||||| | |||||||||||||| |||||
Sbjct: 683 tcctcggcctcagccctgccacaagtacagttcttgcatgctttctt 637
to top
>ref|XM_474393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score =  135 bits (68), Expect = 2e-28
 Identities = 134/156 (85%)
 Strand = Plus / Minus

                                                                       
Query: 366 cctctgtatgggcaggtgctgcatcggaacgcgtcgcccaacccacaactgccacaagct 425
           |||||||||||||| || |  ||||| || || ||||||||||||||| |||||||||||
Sbjct: 728 cctctgtatgggcaagtaccacatcgaaatgcatcgcccaacccacaattgccacaagct 669

                                                                       
Query: 426 gacacagggttatcgatctgttctgcagtcagccccagcttctccaccttctgctcagcc 485
           |||  |||||||| |||||||||||  || ||    |||||||||||||||| |||||||
Sbjct: 668 gactgagggttattgatctgttctgatgtgagatttagcttctccaccttctcctcagcc 609

                                               
Query: 486 tcagccctgccacaactgcagttcttgcatgccttc 521
           ||||||| ||||||| | ||||||||||||||||||
Sbjct: 608 tcagcccggccacaagtacagttcttgcatgccttc 573
to top
>ref|XM_474324.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 798

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/156 (85%)
 Strand = Plus / Minus

                                                                       
Query: 366 cctctgtatgggcaggtgctgcatcggaacgcgtcgcccaacccacaactgccacaagct 425
           |||||||||||||| || |  ||||| || || ||||||||||||||| |||||||||| 
Sbjct: 731 cctctgtatgggcaagtaccacatcgaaatgcatcgcccaacccacaattgccacaagcg 672

                                                                       
Query: 426 gacacagggttatcgatctgttctgcagtcagccccagcttctccaccttctgctcagcc 485
           |||  |||||||| |||||||||||  || ||    |||||||||||||||| |||||||
Sbjct: 671 gactgagggttattgatctgttctgatgtgagatttagcttctccaccttctcctcagcc 612

                                               
Query: 486 tcagccctgccacaactgcagttcttgcatgccttc 521
           ||||||| ||||||| | ||||||||||||||||||
Sbjct: 611 tcagcccggccacaagtacagttcttgcatgccttc 576
to top
>dbj|AK102124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084O13, full
           insert sequence
          Length = 1379

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/156 (85%)
 Strand = Plus / Minus

                                                                       
Query: 366 cctctgtatgggcaggtgctgcatcggaacgcgtcgcccaacccacaactgccacaagct 425
           |||||||||||||| || |  ||||| || || ||||||||||||||| |||||||||| 
Sbjct: 810 cctctgtatgggcaagtaccacatcgaaatgcatcgcccaacccacaattgccacaagcg 751

                                                                       
Query: 426 gacacagggttatcgatctgttctgcagtcagccccagcttctccaccttctgctcagcc 485
           |||  |||||||| |||||||||||  || ||    |||||||||||||||| |||||||
Sbjct: 750 gactgagggttattgatctgttctgatgtgagatttagcttctccaccttctcctcagcc 691

                                               
Query: 486 tcagccctgccacaactgcagttcttgcatgccttc 521
           ||||||| ||||||| | ||||||||||||||||||
Sbjct: 690 tcagcccggccacaagtacagttcttgcatgccttc 655
to top
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06,
             complete sequence
          Length = 148023

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                         
Query: 415   tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
             ||||||||||||||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 62572 tgccacaagctgactgagggttattgatctgttctgatgtgagatttagcttctccacct 62631

                                                            
Query: 475   tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
             ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 62632 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 62678



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 336   accttctcgcccaacttgaacggtgccaggcctctgtatgggcaggtgctgcatcggaac 395
             ||||||||||||  |||||| | ||  || |||||||||||||| || |  ||||| || 
Sbjct: 62352 accttctcgcccggcttgaatgctggtagacctctgtatgggcaagtaccacatcgaaat 62411

                              
Query: 396   gcgtcgcccaacccaca 412
             || ||||||||||||||
Sbjct: 62412 gcatcgcccaacccaca 62428
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                            
Query: 415      tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
                ||||||||||||||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 34856459 tgccacaagctgactgagggttattgatctgttctgatgtgagatttagcttctccacct 34856518

                                                               
Query: 475      tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
                ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 34856519 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 34856565



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 415      tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
                |||||||||| |||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 34460549 tgccacaagcggactgagggttattgatctgttctgatgtgagatttagcttctccacct 34460490

                                                               
Query: 475      tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
                ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 34460489 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 34460443



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                            
Query: 336      accttctcgcccaacttgaacggtgccaggcctctgtatgggcaggtgctgcatcggaac 395
                ||||||||||||  |||||| | ||  || |||||||||||||| || |  ||||| || 
Sbjct: 34856239 accttctcgcccggcttgaatgctggtagacctctgtatgggcaagtaccacatcgaaat 34856298

                                 
Query: 396      gcgtcgcccaacccaca 412
                || ||||||||||||||
Sbjct: 34856299 gcatcgcccaacccaca 34856315
to top
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete
             sequence
          Length = 115564

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                         
Query: 415   tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
             ||||||||||||||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 36105 tgccacaagctgactgagggttattgatctgttctgatgtgagatttagcttctccacct 36164

                                                            
Query: 475   tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
             ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 36165 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 36211



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 336   accttctcgcccaacttgaacggtgccaggcctctgtatgggcaggtgctgcatcggaac 395
             ||||||||||||  |||||| | ||  || |||||||||||||| || |  ||||| || 
Sbjct: 35885 accttctcgcccggcttgaatgctggtagacctctgtatgggcaagtaccacatcgaaat 35944

                              
Query: 396   gcgtcgcccaacccaca 412
             || ||||||||||||||
Sbjct: 35945 gcatcgcccaacccaca 35961
to top
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete
              sequence
          Length = 110682

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                          
Query: 415    tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
              ||||||||||||||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 110181 tgccacaagctgactgagggttattgatctgttctgatgtgagatttagcttctccacct 110240

                                                             
Query: 475    tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
              ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 110241 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 110287



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                          
Query: 336    accttctcgcccaacttgaacggtgccaggcctctgtatgggcaggtgctgcatcggaac 395
              ||||||||||||  |||||| | ||  || |||||||||||||| || |  ||||| || 
Sbjct: 109961 accttctcgcccggcttgaatgctggtagacctctgtatgggcaagtaccacatcgaaat 110020

                               
Query: 396    gcgtcgcccaacccaca 412
              || ||||||||||||||
Sbjct: 110021 gcatcgcccaacccaca 110037
to top
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
             complete sequence
          Length = 164943

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                         
Query: 415   tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
             |||||||||| |||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 78034 tgccacaagcggactgagggttattgatctgttctgatgtgagatttagcttctccacct 77975

                                                            
Query: 475   tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
             ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 77974 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 77928
to top
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
             sequence
          Length = 138387

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                         
Query: 415   tgccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccacct 474
             |||||||||| |||  |||||||| |||||||||||  || ||    |||||||||||||
Sbjct: 81857 tgccacaagcggactgagggttattgatctgttctgatgtgagatttagcttctccacct 81798

                                                            
Query: 475   tctgctcagcctcagccctgccacaactgcagttcttgcatgccttc 521
             ||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 81797 tctcctcagcctcagcccggccacaagtacagttcttgcatgccttc 81751
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 462      agcttctccaccttctgctcagcctcagccct 493
                ||||| ||||| ||||||||||||||||||||
Sbjct: 26397142 agcttgtccactttctgctcagcctcagccct 26397173
to top
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1789_C07
          Length = 138944

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 462   agcttctccaccttctgctcagcctcagccct 493
             ||||| ||||| ||||||||||||||||||||
Sbjct: 46694 agcttgtccactttctgctcagcctcagccct 46725
to top
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1770_H02
          Length = 170648

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 462    agcttctccaccttctgctcagcctcagccct 493
              ||||| ||||| ||||||||||||||||||||
Sbjct: 126723 agcttgtccactttctgctcagcctcagccct 126754
to top
>gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete sequence
          Length = 161653

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 38     cagtcaaattacatgcacgtaa 59
              ||||||||||||||||||||||
Sbjct: 120776 cagtcaaattacatgcacgtaa 120755
to top
>gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome 8, complete sequence
          Length = 167913

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 478   gctcagcctcagccctgccaca 499
             ||||||||||||||||||||||
Sbjct: 63520 gctcagcctcagccctgccaca 63541
to top
>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
              BACR02C24, complete sequence
          Length = 234783

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 38     cagtcaaattacatgcacgtaa 59
              ||||||||||||||||||||||
Sbjct: 114262 cagtcaaattacatgcacgtaa 114283
to top
>emb|BX072530.5| Zebrafish DNA sequence from clone DKEY-221K19, complete sequence
          Length = 167009

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 226    tacatagatatcttcctaaaga 247
              ||||||||||||||||||||||
Sbjct: 157345 tacatagatatcttcctaaaga 157324
to top
>gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 of 74 of the complete
              sequence
          Length = 310498

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 38     cagtcaaattacatgcacgtaa 59
              ||||||||||||||||||||||
Sbjct: 219441 cagtcaaattacatgcacgtaa 219420
to top
>emb|AL591598.8| Mouse DNA sequence from clone RP23-272C14 on chromosome 2, complete
             sequence
          Length = 191520

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 472   ccttctgctcagcctcagccct 493
             ||||||||||||||||||||||
Sbjct: 49719 ccttctgctcagcctcagccct 49740
to top
>gb|AC108487.2| Homo sapiens chromosome 3 clone RP11-733E24, complete sequence
          Length = 180925

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 495    ccacaactgcagttcttgcatgcct 519
              ||||||||||||||||||| |||||
Sbjct: 157148 ccacaactgcagttcttgcttgcct 157172
to top
>gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, complete sequence
          Length = 184285

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 458    ccccagcttctccaccttctg 478
              |||||||||||||||||||||
Sbjct: 116034 ccccagcttctccaccttctg 116054
to top
>gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182G24, complete sequence
          Length = 149006

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 495   ccacaactgcagttcttgcatgcct 519
             ||||||||||||||||||| |||||
Sbjct: 96594 ccacaactgcagttcttgcttgcct 96618
to top
>gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 246546

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 495    ccacaactgcagttcttgcatgcct 519
              ||||||||||||||||||| |||||
Sbjct: 130747 ccacaactgcagttcttgcttgcct 130771
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 458     ccccagcttctccaccttctg 478
               |||||||||||||||||||||
Sbjct: 2343757 ccccagcttctccaccttctg 2343737
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     tcagccccagcttctccacc 473
               ||||||||||||||||||||
Sbjct: 2239381 tcagccccagcttctccacc 2239400
to top
>gb|AE006877.1| Sulfolobus solfataricus P2 section 236 of 272 of the complete genome
          Length = 13959

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  ctgtatgggcaggtgctgca 388
            ||||||||||||||||||||
Sbjct: 9895 ctgtatgggcaggtgctgca 9876
to top
>emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in linkage group 8,
             complete sequence
          Length = 153753

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    tttccatcatactgtatgtttcac 38
             |||||| |||||||||||||||||
Sbjct: 81836 tttccagcatactgtatgtttcac 81813
to top
>emb|AL845475.12| Mouse DNA sequence from clone RP23-403E20 on chromosome 11 Contains a
             novel pseudogene (similar to RIKEN cDNA 4833439L19 gene)
             and a ribosomal protein L26 (Rpl26) pseudogene, complete
             sequence
          Length = 147170

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agcaaaacaaagtctttcca 20
             ||||||||||||||||||||
Sbjct: 51152 agcaaaacaaagtctttcca 51171
to top
>emb|CR392032.9| Zebrafish DNA sequence from clone DKEYP-64A3 in linkage group 2,
            complete sequence
          Length = 191649

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   ttccatcatactgtatgtttcaca 39
            ||||| ||||||||||||||||||
Sbjct: 8239 ttccagcatactgtatgtttcaca 8216
to top
>gb|AC010501.7| Homo sapiens chromosome 5 clone CTD-2377O17, complete sequence
          Length = 61738

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   cccagcttctccaccttctg 478
             ||||||||||||||||||||
Sbjct: 56039 cccagcttctccaccttctg 56020
to top
>emb|BX927382.9| Zebrafish DNA sequence from clone DKEY-168I13 in linkage group 2,
             complete sequence
          Length = 57395

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    ttccatcatactgtatgtttcaca 39
             ||||| ||||||||||||||||||
Sbjct: 49385 ttccagcatactgtatgtttcaca 49408
to top
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 461     cagcttctccaccttctgct 480
               ||||||||||||||||||||
Sbjct: 1127727 cagcttctccaccttctgct 1127746
to top
>gb|AC078993.20| Homo sapiens Xp BAC RP11-431J24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 214001

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   tgctcagcctcagccctgcc 496
             ||||||||||||||||||||
Sbjct: 66119 tgctcagcctcagccctgcc 66100
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 454      tcagccccagcttctccaccttct 477
                ||||||||| ||||||||||||||
Sbjct: 13206992 tcagccccaccttctccaccttct 13206969
to top
>gb|AC145938.4| Pan troglodytes BAC clone RP43-18H20 from chromosome 7, complete sequence
          Length = 178210

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tttccatcatactgtatgtt 34
              ||||||||||||||||||||
Sbjct: 113475 tttccatcatactgtatgtt 113456
to top
>gb|AC015987.6| Homo sapiens chromosome 7 clone RP11-207O19, complete sequence
          Length = 181882

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tttccatcatactgtatgtt 34
              ||||||||||||||||||||
Sbjct: 145778 tttccatcatactgtatgtt 145759
to top
>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence
          Length = 211732

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   gaggaagttatcagacaagg 333
             ||||||||||||||||||||
Sbjct: 85253 gaggaagttatcagacaagg 85272
to top
>gb|AC024083.3|AC024083 Homo sapiens chromosome 7 clone RP11-24I23, complete sequence
          Length = 152283

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tttccatcatactgtatgtt 34
             ||||||||||||||||||||
Sbjct: 47459 tttccatcatactgtatgtt 47440
to top
>gb|AC116337.2| Homo sapiens chromosome 5 clone CTD-2503O16, complete sequence
          Length = 122363

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    cccagcttctccaccttctg 478
              ||||||||||||||||||||
Sbjct: 103393 cccagcttctccaccttctg 103412
to top
>emb|BX537274.3| Zebrafish DNA sequence from clone DKEY-103L3 in linkage group 13,
              complete sequence
          Length = 151298

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agcaaaacaaagtctttcca 20
              ||||||||||||||||||||
Sbjct: 121816 agcaaaacaaagtctttcca 121835
to top
>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0055N01
          Length = 154783

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 454   tcagccccagcttctccaccttct 477
             ||||||||| ||||||||||||||
Sbjct: 28426 tcagccccaccttctccaccttct 28403
to top
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 454    tcagccccagcttctccaccttct 477
              ||||||||| ||||||||||||||
Sbjct: 129082 tcagccccaccttctccaccttct 129059
to top
>dbj|AP000497.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308,
             anti-oncogene region, section 5/5
          Length = 146596

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 479   ctcagcctcagccctgccacaact 502
             |||||||||||| |||||||||||
Sbjct: 60488 ctcagcctcagcactgccacaact 60465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,202,366
Number of Sequences: 3902068
Number of extensions: 4202366
Number of successful extensions: 79760
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79576
Number of HSP's gapped (non-prelim): 184
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top