>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 480

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 443 EKLREIGFIVYSIGKPLDGWLKDMPAVA 360
           +KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 453 DKLREIGFIVYSIGKPLDPWLKDMPAVA 480

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 35.0 bits (79), Expect = 0.082
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 309 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 437
           D A+     P DV+ E    +G  VL+PP    AD VD E  +PE
Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845

>LEU1_HAEIN (P43861) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 515

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 9   ISAKQLRNQPATKFIGYK--GEKTSSDSTGGRG 101
           +SA   +  PAT F+  K  GEK S+ S GG G
Sbjct: 396 LSAHSTKEYPATAFVQLKLDGEKLSTSSIGGNG 428

>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein|
           homolog)
          Length = 1320

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 370 PPSPNSLSTSAGLVCLPAASSIGAAGRQGKEG 275
           PP PNS  ++ G   +PAA   GA   Q ++G
Sbjct: 717 PPVPNSTVSARGQRSVPAAGKAGAPATQAQKG 748

>DDX58_MOUSE (Q6Q899) Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)|
           (DEAD-box protein 58) (Retinoic acid-inducible gene 1
           protein) (RIG-1) (RIG-I)
          Length = 926

 Score = 24.6 bits (52), Expect(2) = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 121 CRSYNQTPRPP--VLSEEVFSPLYPMNF 44
           C++ +Q P PP    S  + SPL P N+
Sbjct: 220 CQNLSQNPGPPSEASSNNLHSPLKPRNY 247



 Score = 22.3 bits (46), Expect(2) = 7.2
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -1

Query: 380 KDMPAVA*FALHVGRPRLSAGGVVDRGCRKAGEGRKEDEXXXXXXXXPFFIVCVLQEKHQ 201
           ++ P V   AL     + S   +VD+G ++A     ED+         F     +QE+ +
Sbjct: 165 ENWPKVLQLALEKDNSKFSELWIVDKGFKRAESKADEDDGAEASSIQIF-----IQEEPE 219

Query: 200 QQFLAR 183
            Q L++
Sbjct: 220 CQNLSQ 225

>VIRD3_AGRRH (P13463) Protein virD3|
          Length = 678

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 253 QTTGSSSFLPSPAFLQPRSTTPPADRRGRPTWRAN*ATAGMSLSHPSSGL 402
           +T+  SS LP P  +    + PP++  GR T       +G ++S P  GL
Sbjct: 204 ETSQESSTLPDPTSVSALYSGPPSEWVGRDTGYETDRNSGDTISAPIRGL 253

>PFA5_KLULA (Q6CRV3) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 349

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 247 QTQTTGSSSFLPSPAFLQPRSTTPPADRRGRPTWRAN*ATAGMSLSHPSS 396
           + +T  S S +P  +   P     P D RG P W +N  +  MS +H S+
Sbjct: 96  EIRTVSSESAVPDNSIAPP--DIYPCDERGYPIWCSNCQSLKMSRTHHST 143

>CB027_HUMAN (Q580R0) Protein C2orf27|
          Length = 203

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 370 PPSPNSLSTSAGLVCLPAASSIGAAGRQGKE 278
           P +    +T+AG VCLPA    G AG Q KE
Sbjct: 143 PAAEGPAATAAGAVCLPA----GGAGEQEKE 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,698,852
Number of Sequences: 219361
Number of extensions: 1242176
Number of successful extensions: 3837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3837
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)