ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33c12 |
|---|---|
| Clone Library Name | barley_pub |
>NDUA5_ARATH (Q9FLX7) Probable NADH-ubiquinone oxidoreductase 18 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18Kd) (CI-18Kd) Length = 169 Score = 129 bits (324), Expect = 4e-30 Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 4/87 (4%) Frame = -1 Query: 486 GCGRVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEE 307 GCG+VEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVIE++ PIPKHVPQHRP LPE+ Sbjct: 82 GCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVIENDAPIPKHVPQHRPGPLPEQ 141 Query: 306 FFKTLDAI----KSDPALQGDSPPQVK 238 F+KTL+ + K++ S PQ+K Sbjct: 142 FYKTLEGLIAESKTEIPAATPSDPQLK 168
>NDUA5_BOVIN (P23935) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 37.4 bits (85), Expect = 0.021 Identities = 14/26 (53%), Positives = 21/26 (80%) Frame = -1 Query: 480 GRVEELIEEAQDELKLIGKMIEWDPW 403 G++EE+I +A++EL L KMI+W PW Sbjct: 74 GQIEEVILQAENELSLARKMIQWKPW 99
>NDUA5_RAT (Q63362) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 35.8 bits (81), Expect = 0.062 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -1 Query: 480 GRVEELIEEAQDELKLIGKMIEWDPW 403 G VEE+I +A+ EL L KM++W PW Sbjct: 74 GEVEEVILQAEKELSLARKMLQWKPW 99
>NDUA5_MOUSE (Q9CPP6) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 35.4 bits (80), Expect = 0.081 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -1 Query: 480 GRVEELIEEAQDELKLIGKMIEWDPW 403 G VEE+I +A+ EL L KM++W PW Sbjct: 74 GEVEEVILQAEKELSLARKMLKWKPW 99
>NDUA5_NEUCR (P24919) NADH-ubiquinone oxidoreductase 29.9 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-29.9KD) (CI-29.9KD) Length = 273 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 486 GCGRVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTP 355 G G +EE+++ A+ ELKL+ M + PW E +E+ P Sbjct: 227 GSGLIEEVVQVAEGELKLVDIMTQARPW--------EALEEEAP 262
>DDAH1_RAT (O08557) NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC| 3.5.3.18) (Dimethylargininase-1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI) (DDAH-1) Length = 284 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -1 Query: 459 EEAQDELKLIGKMIE--WDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEEF 304 E AQ LK++ +M + +D VPDD I N P HV HR PEE+ Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHR---TPEEY 241
>DDAH1_MOUSE (Q9CWS0) NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC| 3.5.3.18) (Dimethylargininase-1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI) (DDAH-1) Length = 284 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -1 Query: 459 EEAQDELKLIGKMIE--WDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEEF 304 E AQ LK++ +M + +D VPDD I N P HV HR PEE+ Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHR---TPEEY 241
>DDAH1_HUMAN (O94760) NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC| 3.5.3.18) (Dimethylargininase-1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI) (DDAH-1) Length = 284 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -1 Query: 459 EEAQDELKLIGKMIE--WDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEEF 304 E AQ LK++ +M + +D VPDD I N P HV HR PEE+ Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHR---TPEEY 241
>DDAH1_BOVIN (P56965) NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC| 3.5.3.18) (Dimethylargininase-1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI) (DDAH-1) Length = 284 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -1 Query: 459 EEAQDELKLIGKMIE--WDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEEF 304 E AQ LK++ +M + +D VPDD I N P HV HR PEE+ Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHR---TPEEY 241
>CCD12_HUMAN (Q8WUD4) Coiled-coil domain-containing protein 12| Length = 166 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 375 VIEDNTPIPKHVPQHRPVALPEEFFKTLDAIKSDPALQ 262 V ED + VPQ +PVA+ E+ + L+A K +P ++ Sbjct: 63 VPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIE 100
>EFP_VIBVY (Q7MGX2) Elongation factor P (EF-P)| Length = 188 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/72 (25%), Positives = 36/72 (50%) Frame = -1 Query: 468 ELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEEFFKTLD 289 E E+ + K +G+ ++W ++E+NT + + P+A+ F L+ Sbjct: 88 ETFEQIAADAKAVGENVKW------------LVENNTCMLT-LWNGNPIAVTPPNFVELE 134 Query: 288 AIKSDPALQGDS 253 I++DP L+GD+ Sbjct: 135 VIETDPGLKGDT 146
>EFP_VIBVU (Q8DCX6) Elongation factor P (EF-P)| Length = 188 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/72 (25%), Positives = 36/72 (50%) Frame = -1 Query: 468 ELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTPIPKHVPQHRPVALPEEFFKTLD 289 E E+ + K +G+ ++W ++E+NT + + P+A+ F L+ Sbjct: 88 ETFEQIAADAKAVGENVKW------------LVENNTCMLT-LWNGNPIAVTPPNFVELE 134 Query: 288 AIKSDPALQGDS 253 I++DP L+GD+ Sbjct: 135 VIETDPGLKGDT 146
>TEGU_EHV1B (P28955) Large tegument protein| Length = 3421 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 399 VPDDYECEVIEDNTPIPKHVPQHRPVALPEEFFKTLDAIKSD 274 +PDD + +NTP+P P P + T DA+ SD Sbjct: 2927 LPDDSPIGAVPENTPLPDDSPIGSPDLSASKNSHTTDAVSSD 2968
>DRD3_RAT (P19020) D(3) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 33 SSTSINRKHKQYFAVLKHCVKNAFTFTGTNLFCLAEAAYCRQRTHETSLNY 185 +ST +NR + L +C G L C AA R+R +T+ NY Sbjct: 19 NSTGVNRARPHAYYALSYCALILAIIFGNGLVC---AAVLRERALQTTTNY 66
>DRD3_MOUSE (P30728) D(3) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 33 SSTSINRKHKQYFAVLKHCVKNAFTFTGTNLFCLAEAAYCRQRTHETSLNY 185 +ST +NR + L +C G L C AA R+R +T+ NY Sbjct: 19 NSTGVNRARPHAYYALSYCALILAIIFGNGLVC---AAVLRERALQTTTNY 66
>CCD12_MOUSE (Q8R344) Coiled-coil domain-containing protein 12| Length = 166 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 375 VIEDNTPIPKHVPQHRPVALPEEFFKTLDAIKSDPALQ 262 V ED + VPQ +PVA+ E+ + L+A K +P ++ Sbjct: 63 VPEDEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIE 100
>HISZ_BACSU (O34459) ATP phosphoribosyltransferase regulatory subunit| Length = 391 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = -1 Query: 483 CGRVEELIEEAQ-----DELKLIGKMIEWDPWGVPDDYEC 379 CGR EE+++ AQ DELK + W + +DY C Sbjct: 224 CGRAEEIVDSAQGKSVVDELKAL--------WDILEDYGC 255
>DACA_BACSU (P08750) D-alanyl-D-alanine carboxypeptidase precursor (EC| 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (CPase) (PBP5) Length = 443 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 471 EELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNT 358 E L+ EA D+ K ++WD PDDY E+ +DN+ Sbjct: 74 EYLLLEAIDQGK-----VKWDQTYTPDDYVYEISQDNS 106
>ADAM2_CAVPO (Q60411) ADAM 2 precursor (A disintegrin and metalloproteinase| domain 2) (Fertilin beta subunit) (PH-30) (PH30) Length = 735 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +2 Query: 236 DFTCGGESPCRAGSDLMASSVLKNSSGSATGRCCGTC 346 D CG + C+ A+ LK++S A G CC C Sbjct: 397 DCDCGSQEECQDTCCDAATCRLKSTSRCAQGPCCNQC 433
>PDGFA_RAT (P28576) Platelet-derived growth factor A chain precursor (PDGF| A-chain) (Platelet-derived growth factor alpha polypeptide) (PDGF-1) Length = 204 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = -1 Query: 474 VEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTPIPKHVPQHRPVAL 316 +E L ++ + +++E D G D E + + KHVP+ RPV + Sbjct: 30 IERLARSQIHSIRDLQRLLEIDSVGAEDALETNLRAHGSHTVKHVPEKRPVPI 82
>UTP10_YEAST (P42945) U3 small nucleolar RNA-associated protein 10 (U3| snoRNA-associated protein 10) Length = 1769 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 348 KHVPQHRPVALPEEFFKTLDAIKS 277 +HVP+HR V L KTLD +K+ Sbjct: 1018 QHVPRHRRVKLFSTLIKTLDPVKA 1041
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 16/85 (18%) Frame = -1 Query: 465 LIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTP-----------IPKHV-----PQ 334 ++ + +E + G + + + +P D++ E E +TP IPK PQ Sbjct: 7150 ILSDISEEGSIAGSLASLEDFEIPKDFQVEASEPSTPTLTPEVTIRETIPKPTPSPTSPQ 7209 Query: 333 HRPVALPEEFFKTLDAIKSDPALQG 259 PV P+ SD L G Sbjct: 7210 KSPVPQPQGLLIPAKVTYSDSILAG 7234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,165,472 Number of Sequences: 219361 Number of extensions: 1135597 Number of successful extensions: 3316 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3210 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3309 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
