ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
2gb|BT017270.1| Zea mays clone EL01N0312E10.c mRNA sequence 244 2e-61
3gb|AY109412.1| Zea mays CL3751_1 mRNA sequence 212 8e-52
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 204 2e-49
5gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 204 2e-49
6gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare str... 204 2e-49
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
8gb|DQ226613.1| Boechera divaricarpa isolate SLW-3-G03 mRNA sequence 70 7e-09
9ref|NM_124662.2| Arabidopsis thaliana oxidoreductase, acting on ... 62 2e-06
10gb|AY079117.1| Arabidopsis thaliana AT5g52840/MXC20_6 mRNA, comp... 62 2e-06
11gb|AY054251.1| Arabidopsis thaliana AT5g52840/MXC20_6 mRNA, comp... 62 2e-06
12emb|BX833220.1|CNS0A1UY Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
13dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 50 0.007
14gb|AC108690.4| Homo sapiens 3 BAC RP11-783N9 (Roswell Park Cance... 44 0.42
15gb|AC073632.4| Homo sapiens BAC clone RP11-202H24 from 2, comple... 44 0.42
16emb|AL389921.12| Human DNA sequence from clone RP11-228G5 on chr... 42 1.7
17gb|AC153609.2| Mus musculus 6 BAC RP23-77I23 (Roswell Park Cance... 40 6.6
18gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 6.6
19ref|XM_370515.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 6.6
20gb|BC058629.1| Mus musculus RIKEN cDNA 4121402D02 gene, mRNA (cD... 40 6.6
21gb|AC145838.3| Microcebus murinus clone CH257-311F17, complete s... 40 6.6
22ref|NM_001032797.1| Ciona intestinalis presenilin-like protein 3... 40 6.6
23ref|XM_994112.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 g... 40 6.6
24ref|XM_994091.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 g... 40 6.6
25ref|XM_994132.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 g... 40 6.6
26gb|AY736820.1| HIV-1 isolate 89BZ_167 from Brazil envelope glyco... 40 6.6
27gb|AC140191.2| Mus musculus BAC clone RP24-375E1 from chromosome... 40 6.6
28gb|AC135238.4| Mus musculus BAC clone RP23-314I1 from chromosome... 40 6.6
29gb|AC122038.3| Mus musculus BAC clone RP24-427G24 from chromosom... 40 6.6
30gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosom... 40 6.6
31emb|AL445931.29| Human DNA sequence from clone RP11-374P20 on ch... 40 6.6
32emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chro... 40 6.6
33emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 6.6
34emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on ch... 40 6.6
35gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, compl... 40 6.6
36ref|NM_028722.1| Mus musculus RIKEN cDNA 4121402D02 gene (412140... 40 6.6
37gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, comple... 40 6.6
38gb|AC011346.5| Homo sapiens chromosome 5 clone CTC-295J13, compl... 40 6.6
39gb|AC016620.7| Homo sapiens chromosome 5 clone CTD-2318A17, comp... 40 6.6
40gb|AY173956.1| HIV-1 isolate BZ167 from Brazil, complete genome 40 6.6
41dbj|AK053719.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 6.6
42dbj|AK014463.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.6
43gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 40 6.6
44dbj|AB178233.2| Ciona intestinalis Ci-PSL3 mRNA for presenilin-l... 40 6.6
45dbj|AK173583.1| Ciona intestinalis cDNA, clone:cicl001g08, full ... 40 6.6
46emb|BX855618.7| Zebrafish DNA sequence from clone CH211-69H5 in ... 40 6.6
47dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 6.6
48emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 6.6
49gb|AC122861.4| Mus musculus BAC clone RP23-140G16 from 19, compl... 40 6.6
50gb|AC002104.1|AC002104 Genomic sequence from Human 9q34, complet... 40 6.6
51gb|AC000405.1|AC000405 Genomic sequence from Human 9q34, complet... 40 6.6
52gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 40 6.6
53emb|AL590963.11| Mouse DNA sequence from clone RP23-395E10 on ch... 40 6.6 
>dbj|AK068580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157B08, full
           insert sequence
          Length = 873

 Score =  307 bits (155), Expect = 2e-80
 Identities = 245/275 (89%)
 Strand = Plus / Minus

                                                                       
Query: 212 atcttgaagagttcaagtttttatgacttcacttgcggaggagagtcaccctgcagagct 271
           |||||| |||||||| || ||||||  |||||||| |||||||| |||||||||||||| 
Sbjct: 637 atcttggagagttcacgtctttatggtttcacttgaggaggagactcaccctgcagagca 578

                                                                       
Query: 272 ggatctgacttgatggcatctagtgtcttgaagaactcctcgggtagtgcaacgggccgg 331
           ||||| || ||||  |||||||||||||||||||||||||| || |||||||| ||||| 
Sbjct: 577 ggatcagatttgacagcatctagtgtcttgaagaactcctcagggagtgcaacaggccga 518

                                                                       
Query: 332 tgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtagtca 391
           |||||||||||||| || || ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct: 517 tgctgcggaacatgtttcgggataagtgtgtcatcttcaataacctcgcattcatagtca 458

                                                                       
Query: 392 tcaggaacaccccagggatcccactcgatcatcttgccgatgagcttgagctcgtcctgg 451
           |||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 457 tcaggaacaccccatgggtcccattcgatcatcttggcgatgagcttgagctcgtcctgg 398

                                              
Query: 452 gcctcctcgatgagctcttcaacccggccgcagcc 486
           ||||||||||||||||| || ||| ||||||||||
Sbjct: 397 gcctcctcgatgagctcctcgacctggccgcagcc 363



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 146 atattgcaggcaaaggacacatgaaacta 174
           ||||||| ||||||| |||||||||||||
Sbjct: 708 atattgctggcaaagaacacatgaaacta 680
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>gb|BT017270.1| Zea mays clone EL01N0312E10.c mRNA sequence
          Length = 800

 Score =  244 bits (123), Expect = 2e-61
 Identities = 204/231 (88%)
 Strand = Plus / Minus

                                                                       
Query: 238 cttcacttgcggaggagagtcaccctgcagagctggatctgacttgatggcatctagtgt 297
           ||||||||| |||||||  || || || || || |||||||| |||| ||||||||||||
Sbjct: 589 cttcacttgaggaggagcatcgccttggagggcgggatctgatttgacggcatctagtgt 530

                                                                       
Query: 298 cttgaagaactcctcgggtagtgcaacgggccggtgctgcggaacatgcttgggaatagg 357
           ||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 529 cttgaagaactcctcaggaagagcaacgggccggtgctgaggaacatgcttaggaattgg 470

                                                                       
Query: 358 tgtgttatcttcaatcacctcgcattcgtagtcatcaggaacaccccagggatcccactc 417
            ||||  |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 469 ggtgtcgtcttcaatcacctcacattcgtagtcatcagggacaccccacggatcccattc 410

                                                              
Query: 418 gatcatcttgccgatgagcttgagctcgtcctgggcctcctcgatgagctc 468
            ||||| ||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 409 aatcattttggcgatgagcttgagctcgtcctcggcctcctcgatgagctc 359
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>gb|AY109412.1| Zea mays CL3751_1 mRNA sequence
          Length = 1279

 Score =  212 bits (107), Expect = 8e-52
 Identities = 200/231 (86%)
 Strand = Plus / Minus

                                                                       
Query: 238 cttcacttgcggaggagagtcaccctgcagagctggatctgacttgatggcatctagtgt 297
           ||||||||| |||||||  || || || ||||| ||||| || ||||  |||||||||| 
Sbjct: 580 cttcacttgaggaggagcatcgccttgaagagcaggatcagatttgacagcatctagtgc 521

                                                                       
Query: 298 cttgaagaactcctcgggtagtgcaacgggccggtgctgcggaacatgcttgggaatagg 357
           ||||||||||||||| || || ||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 520 cttgaagaactcctcaggaagagcaacaggccggtgctgaggaacatgcttaggaattgg 461

                                                                       
Query: 358 tgtgttatcttcaatcacctcgcattcgtagtcatcaggaacaccccagggatcccactc 417
            ||||  |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct: 460 ggtgtcgtcttcaatcacctcacattcgtagtcatcgggaacaccccatggatcccattc 401

                                                              
Query: 418 gatcatcttgccgatgagcttgagctcgtcctgggcctcctcgatgagctc 468
            ||||| ||  ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 400 aatcattttagcgatgagcttgagctcgtcctcggcctcctcgatgagctc 350
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  204 bits (103), Expect = 2e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                            
Query: 212      atcttgaagagttcaagtttttatgacttcacttgcggaggagagtcaccctgcagagct 271
                |||||| |||||||| || ||||||  |||||||| |||||||| |||||||||||||| 
Sbjct: 11156816 atcttggagagttcacgtctttatggtttcacttgaggaggagactcaccctgcagagca 11156757

                                                                            
Query: 272      ggatctgacttgatggcatctagtgtcttgaagaactcctcgggtagtgcaacgggccgg 331
                ||||| || ||||  |||||||||||||||||||||||||| || |||||||| ||||| 
Sbjct: 11156756 ggatcagatttgacagcatctagtgtcttgaagaactcctcagggagtgcaacaggccga 11156697

                                                                            
Query: 332      tgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtagtca 391
                |||||||||||||| || || ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct: 11156696 tgctgcggaacatgtttcgggataagtgtgtcatcttcaataacctcgcattcatagtca 11156637

                                       
Query: 392      tcaggaacaccccagggatccca 414
                |||||||||||||| || |||||
Sbjct: 11156636 tcaggaacaccccatgggtccca 11156614



 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                            
Query: 417      cgatcatcttgccgatgagcttgagctcgtcctgggcctcctcgatgagctcttcaaccc 476
                ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| 
Sbjct: 11154580 cgatcatcttggcgatgagcttgagctcgtcctgggcctcctcgatgagctcctcgacct 11154521

                          
Query: 477      ggccgcagcc 486
                ||||||||||
Sbjct: 11154520 ggccgcagcc 11154511



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 146      atattgcaggcaaaggacacatgaaacta 174
                ||||||| ||||||| |||||||||||||
Sbjct: 11156887 atattgctggcaaagaacacatgaaacta 11156859
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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score =  204 bits (103), Expect = 2e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                         
Query: 212   atcttgaagagttcaagtttttatgacttcacttgcggaggagagtcaccctgcagagct 271
             |||||| |||||||| || ||||||  |||||||| |||||||| |||||||||||||| 
Sbjct: 70173 atcttggagagttcacgtctttatggtttcacttgaggaggagactcaccctgcagagca 70114

                                                                         
Query: 272   ggatctgacttgatggcatctagtgtcttgaagaactcctcgggtagtgcaacgggccgg 331
             ||||| || ||||  |||||||||||||||||||||||||| || |||||||| ||||| 
Sbjct: 70113 ggatcagatttgacagcatctagtgtcttgaagaactcctcagggagtgcaacaggccga 70054

                                                                         
Query: 332   tgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtagtca 391
             |||||||||||||| || || ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct: 70053 tgctgcggaacatgtttcgggataagtgtgtcatcttcaataacctcgcattcatagtca 69994

                                    
Query: 392   tcaggaacaccccagggatccca 414
             |||||||||||||| || |||||
Sbjct: 69993 tcaggaacaccccatgggtccca 69971



 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                         
Query: 417   cgatcatcttgccgatgagcttgagctcgtcctgggcctcctcgatgagctcttcaaccc 476
             ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| 
Sbjct: 67937 cgatcatcttggcgatgagcttgagctcgtcctgggcctcctcgatgagctcctcgacct 67878

                       
Query: 477   ggccgcagcc 486
             ||||||||||
Sbjct: 67877 ggccgcagcc 67868



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 146   atattgcaggcaaaggacacatgaaacta 174
             ||||||| ||||||| |||||||||||||
Sbjct: 70244 atattgctggcaaagaacacatgaaacta 70216
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>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0085H08, from chromosome 3, complete sequence
          Length = 126708

 Score =  204 bits (103), Expect = 2e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                          
Query: 212    atcttgaagagttcaagtttttatgacttcacttgcggaggagagtcaccctgcagagct 271
              |||||| |||||||| || ||||||  |||||||| |||||||| |||||||||||||| 
Sbjct: 123913 atcttggagagttcacgtctttatggtttcacttgaggaggagactcaccctgcagagca 123972

                                                                          
Query: 272    ggatctgacttgatggcatctagtgtcttgaagaactcctcgggtagtgcaacgggccgg 331
              ||||| || ||||  |||||||||||||||||||||||||| || |||||||| ||||| 
Sbjct: 123973 ggatcagatttgacagcatctagtgtcttgaagaactcctcagggagtgcaacaggccga 124032

                                                                          
Query: 332    tgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtagtca 391
              |||||||||||||| || || ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct: 124033 tgctgcggaacatgtttcgggataagtgtgtcatcttcaataacctcgcattcatagtca 124092

                                     
Query: 392    tcaggaacaccccagggatccca 414
              |||||||||||||| || |||||
Sbjct: 124093 tcaggaacaccccatgggtccca 124115



 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                          
Query: 417    cgatcatcttgccgatgagcttgagctcgtcctgggcctcctcgatgagctcttcaaccc 476
              ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| 
Sbjct: 126149 cgatcatcttggcgatgagcttgagctcgtcctgggcctcctcgatgagctcctcgacct 126208

                        
Query: 477    ggccgcagcc 486
              ||||||||||
Sbjct: 126209 ggccgcagcc 126218



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 146    atattgcaggcaaaggacacatgaaacta 174
              ||||||| ||||||| |||||||||||||
Sbjct: 123842 atattgctggcaaagaacacatgaaacta 123870
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  204 bits (103), Expect = 2e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                            
Query: 212      atcttgaagagttcaagtttttatgacttcacttgcggaggagagtcaccctgcagagct 271
                |||||| |||||||| || ||||||  |||||||| |||||||| |||||||||||||| 
Sbjct: 11153579 atcttggagagttcacgtctttatggtttcacttgaggaggagactcaccctgcagagca 11153520

                                                                            
Query: 272      ggatctgacttgatggcatctagtgtcttgaagaactcctcgggtagtgcaacgggccgg 331
                ||||| || ||||  |||||||||||||||||||||||||| || |||||||| ||||| 
Sbjct: 11153519 ggatcagatttgacagcatctagtgtcttgaagaactcctcagggagtgcaacaggccga 11153460

                                                                            
Query: 332      tgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtagtca 391
                |||||||||||||| || || ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct: 11153459 tgctgcggaacatgtttcgggataagtgtgtcatcttcaataacctcgcattcatagtca 11153400

                                       
Query: 392      tcaggaacaccccagggatccca 414
                |||||||||||||| || |||||
Sbjct: 11153399 tcaggaacaccccatgggtccca 11153377



 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                            
Query: 417      cgatcatcttgccgatgagcttgagctcgtcctgggcctcctcgatgagctcttcaaccc 476
                ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| 
Sbjct: 11151343 cgatcatcttggcgatgagcttgagctcgtcctgggcctcctcgatgagctcctcgacct 11151284

                          
Query: 477      ggccgcagcc 486
                ||||||||||
Sbjct: 11151283 ggccgcagcc 11151274



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 146      atattgcaggcaaaggacacatgaaacta 174
                ||||||| ||||||| |||||||||||||
Sbjct: 11153650 atattgctggcaaagaacacatgaaacta 11153622
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>gb|DQ226613.1| Boechera divaricarpa isolate SLW-3-G03 mRNA sequence
          Length = 535

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                       
Query: 329 cggtgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtag 388
           ||||||||||||||||| ||||| || ||||  | ||  ||||| || ||||| ||||| 
Sbjct: 137 cggtgctgcggaacatgtttgggtatcggtgcatcattctcaatgacttcgcactcgtaa 196

                                              
Query: 389 tcatcaggaacaccccagggatcccactcgatcat 423
           ||||| ||||||||||| |||||||| ||||||||
Sbjct: 197 tcatctggaacaccccaaggatcccattcgatcat 231
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>ref|NM_124662.2| Arabidopsis thaliana oxidoreductase, acting on NADH or NADPH
           AT5G52840 mRNA, complete cds
          Length = 786

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                       
Query: 329 cggtgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtag 388
           |||||||| ||||||||||| ||||| || |  | ||  |||||||| || || ||||| 
Sbjct: 465 cggtgctgaggaacatgctttggaatcggcgcatcattctcaatcacttcacactcgtaa 406

                                                                       
Query: 389 tcatcaggaacaccccagggatcccactcgatcatcttgccgatgagcttgagctcgtcc 448
           ||||| || |||||||| ||||||||||| ||||| || || |||||  ||||||| || 
Sbjct: 405 tcatctggtacaccccaaggatcccactcaatcattttcccaatgagtgtgagctcatcg 346

                                  
Query: 449 tgggcctcctcgatgagctcttc 471
            | ||||| ||||| ||||||||
Sbjct: 345 cgagcctcttcgataagctcttc 323
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>gb|AY079117.1| Arabidopsis thaliana AT5g52840/MXC20_6 mRNA, complete cds
          Length = 510

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                       
Query: 329 cggtgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtag 388
           |||||||| ||||||||||| ||||| || |  | ||  |||||||| || || ||||| 
Sbjct: 401 cggtgctgaggaacatgctttggaatcggcgcatcattctcaatcacttcacactcgtaa 342

                                                                       
Query: 389 tcatcaggaacaccccagggatcccactcgatcatcttgccgatgagcttgagctcgtcc 448
           ||||| || |||||||| ||||||||||| ||||| || || |||||  ||||||| || 
Sbjct: 341 tcatctggtacaccccaaggatcccactcaatcattttcccaatgagtgtgagctcatcg 282

                                  
Query: 449 tgggcctcctcgatgagctcttc 471
            | ||||| ||||| ||||||||
Sbjct: 281 cgagcctcttcgataagctcttc 259
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>gb|AY054251.1| Arabidopsis thaliana AT5g52840/MXC20_6 mRNA, complete cds
          Length = 737

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                       
Query: 329 cggtgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtag 388
           |||||||| ||||||||||| ||||| || |  | ||  |||||||| || || ||||| 
Sbjct: 465 cggtgctgaggaacatgctttggaatcggcgcatcattctcaatcacttcacactcgtaa 406

                                                                       
Query: 389 tcatcaggaacaccccagggatcccactcgatcatcttgccgatgagcttgagctcgtcc 448
           ||||| || |||||||| ||||||||||| ||||| || || |||||  ||||||| || 
Sbjct: 405 tcatctggtacaccccaaggatcccactcaatcattttcccaatgagtgtgagctcatcg 346

                                  
Query: 449 tgggcctcctcgatgagctcttc 471
            | ||||| ||||| ||||||||
Sbjct: 345 cgagcctcttcgataagctcttc 323
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>emb|BX833220.1|CNS0A1UY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL39ZG07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 724

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                       
Query: 329 cggtgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtag 388
           |||||||| ||||||||||| ||||| || |  | ||  |||||||| || || ||||| 
Sbjct: 444 cggtgctgaggaacatgctttggaatcggcgcatcattctcaatcacttcacactcgtaa 385

                                                                       
Query: 389 tcatcaggaacaccccagggatcccactcgatcatcttgccgatgagcttgagctcgtcc 448
           ||||| || |||||||| ||||||||||| ||||| || || |||||  ||||||| || 
Sbjct: 384 tcatctggtacaccccaaggatcccactcaatcattttcccaatgagtgtgagctcatcg 325

                                  
Query: 449 tgggcctcctcgatgagctcttc 471
            | ||||| ||||| ||||||||
Sbjct: 324 cgagcctcttcgataagctcttc 302
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>dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC20
          Length = 81575

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 329   cggtgctgcggaacatgcttgggaataggtgtgttatcttcaatcacctcgcattcgtag 388
             |||||||| ||||||||||| ||||| || |  | ||  |||||||| || || ||||| 
Sbjct: 19741 cggtgctgaggaacatgctttggaatcggcgcatcattctcaatcacttcacactcgtaa 19682

                                          
Query: 389   tcatcaggaacaccccagggatcccactc 417
             ||||| || |||||||| |||||||||||
Sbjct: 19681 tcatctggtacaccccaaggatcccactc 19653
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>gb|AC108690.4| Homo sapiens 3 BAC RP11-783N9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194994

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 21     gtatttgatctttcatcaacat 42
              ||||||||||||||||||||||
Sbjct: 162435 gtatttgatctttcatcaacat 162414
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>gb|AC073632.4| Homo sapiens BAC clone RP11-202H24 from 2, complete sequence
          Length = 40132

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 217   gaagagttcaagtttttatgac 238
             ||||||||||||||||||||||
Sbjct: 11286 gaagagttcaagtttttatgac 11307
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>emb|AL389921.12| Human DNA sequence from clone RP11-228G5 on chromosome 1 Contains part
             of the gene for membrane-associated guanylate
             kinase-related 3 (MAGI-3), complete sequence
          Length = 68764

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 47    taatagaaaacataaacagtatttt 71
             ||||||||||||| |||||||||||
Sbjct: 65091 taatagaaaacatgaacagtatttt 65115
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>gb|AC153609.2| Mus musculus 6 BAC RP23-77I23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221782

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    agtttttatgacttcacttg 246
              ||||||||||||||||||||
Sbjct: 154313 agtttttatgacttcacttg 154332
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     cttgaagagttcaagttttt 233
               ||||||||||||||||||||
Sbjct: 4247012 cttgaagagttcaagttttt 4246993
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>ref|XM_370515.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
           (MG07012.4) partial mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 cttgccgatgagcttgagct 443
           ||||||||||||||||||||
Sbjct: 627 cttgccgatgagcttgagct 608
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>gb|BC058629.1| Mus musculus RIKEN cDNA 4121402D02 gene, mRNA (cDNA clone MGC:64809
            IMAGE:6402215), complete cds
          Length = 2933

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 2156 gatgagcttgagctcgtcct 2175
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>gb|AC145838.3| Microcebus murinus clone CH257-311F17, complete sequence
          Length = 204661

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ttaaaaacgcattcacattc 110
              ||||||||||||||||||||
Sbjct: 168730 ttaaaaacgcattcacattc 168749
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>ref|NM_001032797.1| Ciona intestinalis presenilin-like protein 3 (PSL3), mRNA
          Length = 1696

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  caactacacactgcaacagg 198
            ||||||||||||||||||||
Sbjct: 1213 caactacacactgcaacagg 1194
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>ref|XM_994112.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 gene, transcript
            variant 5 (4121402D02Rik), mRNA
          Length = 3193

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 1005 gatgagcttgagctcgtcct 1024
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>ref|XM_994091.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 gene, transcript
            variant 2 (4121402D02Rik), mRNA
          Length = 4296

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 2108 gatgagcttgagctcgtcct 2127
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>ref|XM_994132.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 gene, transcript
            variant 2 (4121402D02Rik), mRNA
          Length = 4344

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 2156 gatgagcttgagctcgtcct 2175
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>gb|AY736820.1| HIV-1 isolate 89BZ_167 from Brazil envelope glycoprotein (env) gene,
            complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   atttgatctttcatcaacat 42
            ||||||||||||||||||||
Sbjct: 1227 atttgatctttcatcaacat 1208
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>gb|AC140191.2| Mus musculus BAC clone RP24-375E1 from chromosome 7, complete sequence
          Length = 164310

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cattcacattcacaggaaca 119
             ||||||||||||||||||||
Sbjct: 15978 cattcacattcacaggaaca 15959
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>gb|AC135238.4| Mus musculus BAC clone RP23-314I1 from chromosome 3, complete sequence
          Length = 247498

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tttattctgcttggcagaag 141
              ||||||||||||||||||||
Sbjct: 101334 tttattctgcttggcagaag 101315
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>gb|AC122038.3| Mus musculus BAC clone RP24-427G24 from chromosome 3, complete sequence
          Length = 188751

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tttattctgcttggcagaag 141
             ||||||||||||||||||||
Sbjct: 18465 tttattctgcttggcagaag 18446
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>gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosome 19, complete
             sequence
          Length = 189613

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ctgcaacaggtgacaaatga 208
             ||||||||||||||||||||
Sbjct: 36283 ctgcaacaggtgacaaatga 36264
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>emb|AL445931.29| Human DNA sequence from clone RP11-374P20 on chromosome 9 Contains the
             5' end of the VAV2 gene for vav 2 oncogene, a novel gene
             (FLJ35348), the 3' end of the BRD3 gene for bromodomain
             containing 3, a novel gene and five CpG islands, complete
             sequence
          Length = 175033

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     caaaagtacaaaacaaacca 20
             ||||||||||||||||||||
Sbjct: 91727 caaaagtacaaaacaaacca 91746
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>emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chromosome 13, complete
             sequence
          Length = 165011

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 386   tagtcatcaggaacaccccaggga 409
             ||||||| ||||||||||||||||
Sbjct: 44639 tagtcataaggaacaccccaggga 44662
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   agcttgagctcgtcctgggc 453
             ||||||||||||||||||||
Sbjct: 61195 agcttgagctcgtcctgggc 61176
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>emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on chromosome 11 Contains
             part of a novel gene and a CpG island, complete sequence
          Length = 218414

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tattctgcttggcagaagca 143
             ||||||||||||||||||||
Sbjct: 82417 tattctgcttggcagaagca 82398
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>gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, complete sequence
          Length = 138073

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 121   atttattctgcttggcagaagcag 144
             |||||||||||||||||| |||||
Sbjct: 99968 atttattctgcttggcagtagcag 99945
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>ref|NM_028722.1| Mus musculus RIKEN cDNA 4121402D02 gene (4121402D02Rik), mRNA
          Length = 3161

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 2409 gatgagcttgagctcgtcct 2428
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>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence
          Length = 177300

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   ggaacaccccagggatccca 414
             ||||||||||||||||||||
Sbjct: 97215 ggaacaccccagggatccca 97196
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>gb|AC011346.5| Homo sapiens chromosome 5 clone CTC-295J13, complete sequence
          Length = 110077

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   caaatgatgcatcttgaaga 221
             ||||||||||||||||||||
Sbjct: 58289 caaatgatgcatcttgaaga 58270
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>gb|AC016620.7| Homo sapiens chromosome 5 clone CTD-2318A17, complete sequence
          Length = 129856

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    atcgattaatagaaaacataaaca 64
             ||||||||||||||||||| ||||
Sbjct: 71093 atcgattaatagaaaacattaaca 71116
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>gb|AY173956.1| HIV-1 isolate BZ167 from Brazil, complete genome
          Length = 8940

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   atttgatctttcatcaacat 42
            ||||||||||||||||||||
Sbjct: 6703 atttgatctttcatcaacat 6684
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>dbj|AK053719.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130302B09 product:hypothetical protein,
            full insert sequence
          Length = 2839

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 2079 gatgagcttgagctcgtcct 2098
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>dbj|AK014463.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:4121402D02 product:hypothetical
            Proline-rich region containing protein, full insert
            sequence
          Length = 3161

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gatgagcttgagctcgtcct 449
            ||||||||||||||||||||
Sbjct: 2409 gatgagcttgagctcgtcct 2428
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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   acaggtgacaaatgatgcat 213
             ||||||||||||||||||||
Sbjct: 24709 acaggtgacaaatgatgcat 24690
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>dbj|AB178233.2| Ciona intestinalis Ci-PSL3 mRNA for presenilin-like protein 3,
            complete cds
          Length = 1696

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  caactacacactgcaacagg 198
            ||||||||||||||||||||
Sbjct: 1213 caactacacactgcaacagg 1194
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>dbj|AK173583.1| Ciona intestinalis cDNA, clone:cicl001g08, full insert sequence
          Length = 1660

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  caactacacactgcaacagg 198
            ||||||||||||||||||||
Sbjct: 1213 caactacacactgcaacagg 1194
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>emb|BX855618.7| Zebrafish DNA sequence from clone CH211-69H5 in linkage group 4,
            complete sequence
          Length = 127818

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    tacaaaacaaaccagtattt 26
            ||||||||||||||||||||
Sbjct: 2173 tacaaaacaaaccagtattt 2154
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>dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB262G12, complete
             sequence
          Length = 126698

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   acaggtgacaaatgatgcat 213
             ||||||||||||||||||||
Sbjct: 44990 acaggtgacaaatgatgcat 44971
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 446     tcctgggcctcctcgatgagctcttcaa 473
               ||||||||||||||  ||||||||||||
Sbjct: 1981916 tcctgggcctcctctttgagctcttcaa 1981943
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>gb|AC122861.4| Mus musculus BAC clone RP23-140G16 from 19, complete sequence
          Length = 205150

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  ctgcaacaggtgacaaatga 208
            ||||||||||||||||||||
Sbjct: 6582 ctgcaacaggtgacaaatga 6601
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>gb|AC002104.1|AC002104 Genomic sequence from Human 9q34, complete sequence
          Length = 47036

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     caaaagtacaaaacaaacca 20
             ||||||||||||||||||||
Sbjct: 15280 caaaagtacaaaacaaacca 15299
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>gb|AC000405.1|AC000405 Genomic sequence from Human 9q34, complete sequence
          Length = 38250

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     caaaagtacaaaacaaacca 20
             ||||||||||||||||||||
Sbjct: 26406 caaaagtacaaaacaaacca 26387
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>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ttaaaaacgcattcacattc 110
              ||||||||||||||||||||
Sbjct: 327857 ttaaaaacgcattcacattc 327876
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>emb|AL590963.11| Mouse DNA sequence from clone RP23-395E10 on chromosome 11, complete
             sequence
          Length = 196724

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   gatgagcttgagctcgtcct 449
             ||||||||||||||||||||
Sbjct: 52902 gatgagcttgagctcgtcct 52883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,817,852
Number of Sequences: 3902068
Number of extensions: 4817852
Number of successful extensions: 99788
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99589
Number of HSP's gapped (non-prelim): 193
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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