ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart33c11 |
|---|---|
| Clone Library Name | barley_pub |
>TAL1_STRCO (O88018) Transaldolase 1 (EC 2.2.1.2)| Length = 381 Score = 50.8 bits (120), Expect = 2e-06 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 5/73 (6%) Frame = -3 Query: 463 DQALDAFIDHGTV-ARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDS 287 + LDA DHG V T+ ++A +A+E+LG+ ++EV +QLE EGV+ F+ ++ Sbjct: 305 EATLDAAADHGDVRGDTVTGGYAQARADLAAVERLGVSYDEVVEQLEQEGVAKFEAAWQE 364 Query: 286 LLT----SLEEKG 260 LL SL+ KG Sbjct: 365 LLAAVTKSLDSKG 377
>TAL_NEIMB (Q9K139) Transaldolase (EC 2.2.1.2)| Length = 351 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = -3 Query: 463 DQALDAFIDHGTVARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSL 284 D L AFIDHGT T+ V EA+ + LGID E + +L+ +G+ F+ +F+ L Sbjct: 287 DATLKAFIDHGTAKATLTEGVEEAQAQLAETAALGIDVETLATRLQEDGLKQFEEAFEKL 346 Query: 283 LTSL 272 L L Sbjct: 347 LAPL 350
>TAL_NEIMA (Q9JSU1) Transaldolase (EC 2.2.1.2)| Length = 351 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/64 (37%), Positives = 36/64 (56%) Frame = -3 Query: 463 DQALDAFIDHGTVARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSL 284 D L AFIDHGT T+ EA+ + + LGID E + +L+ +G+ F+ +F+ L Sbjct: 287 DATLKAFIDHGTAKATLTEGADEAQAQLAEIAALGIDVETLAARLQEDGLKQFEEAFEKL 346 Query: 283 LTSL 272 L L Sbjct: 347 LAPL 350
>TAL2_STRAW (Q829U5) Transaldolase 2 (EC 2.2.1.2)| Length = 372 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = -3 Query: 463 DQALDAFIDHGTV-ARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDS 287 + L+A DHG + TI +A A+EKLGI +++V + LE EGV F+ S++ Sbjct: 296 EATLEATADHGEIRGNTIAGTYEQARADLDAVEKLGIAYDDVVQLLEEEGVDKFEASWND 355 Query: 286 LLTSLE 269 LL S E Sbjct: 356 LLKSTE 361
>TAL1_STRAW (Q82M93) Transaldolase 1 (EC 2.2.1.2)| Length = 378 Score = 46.2 bits (108), Expect = 4e-05 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Frame = -3 Query: 454 LDAFIDHGTV-ARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSLL- 281 L+A DHG + T+ ++A +A+E+LGI ++EV KQLE E V+ F+ ++ LL Sbjct: 305 LNATADHGDIHGDTVTGGYAQARADLAAVERLGISYDEVVKQLEDEAVAKFEVAWGDLLE 364 Query: 280 ---TSLEEKG 260 TSL KG Sbjct: 365 AVATSLRGKG 374
>TAL_MYCTU (O06812) Transaldolase (EC 2.2.1.2)| Length = 373 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = -3 Query: 463 DQALDAFIDHGTV-ARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDS 287 ++ +DA DHG + T+ S+A+ ++ L +GID +V LE EGV F+ S++ Sbjct: 300 EKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNE 359 Query: 286 LLTSLEEKGNALKTAA 239 L L+E L TAA Sbjct: 360 L---LQETRAHLDTAA 372
>TAL_MYCBO (P59955) Transaldolase (EC 2.2.1.2)| Length = 373 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = -3 Query: 463 DQALDAFIDHGTV-ARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDS 287 ++ +DA DHG + T+ S+A+ ++ L +GID +V LE EGV F+ S++ Sbjct: 300 EKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNE 359 Query: 286 LLTSLEEKGNALKTAA 239 L L+E L TAA Sbjct: 360 L---LQETRAHLDTAA 372
>TAL_LEIXX (Q6AF36) Transaldolase (EC 2.2.1.2)| Length = 381 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = -3 Query: 463 DQALDAFIDHGTVAR-TIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDS 287 ++ LDA DH +A T+ + A+G+ AL LG+D+++V LE EGV F S+ Sbjct: 303 EKTLDATFDHAQLAGDTVTGEYAGAQGVLDALAALGVDYDDVTATLEREGVDKFIVSWGE 362 Query: 286 LLTSLEE 266 L+ ++ + Sbjct: 363 LVETVRK 369
>TAL_MYCLE (P55193) Transaldolase (EC 2.2.1.2)| Length = 375 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -3 Query: 463 DQALDAFIDHGTV-ARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDS 287 + +DA DHG + TI ++ ++ +L +G+D +V LEHEGV F S++ Sbjct: 302 ETTIDAVADHGVIRGDTISGTTLSSQKVFDSLVAVGVDLIDVFAVLEHEGVQKFVKSWNE 361 Query: 286 LLTSLEEK 263 LL +E+ Sbjct: 362 LLKETQEQ 369
>TAL2_STRCO (Q9XAC0) Transaldolase 2 (EC 2.2.1.2)| Length = 372 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = -3 Query: 439 DHGTVAR-TIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSLLTSLE 269 DHG + + + A A+EKLGI ++EV + LE EGV F+ +++ LL S E Sbjct: 304 DHGEITGDAVAGSYERARADLDAIEKLGISYDEVVQLLEKEGVDKFEDAWNDLLKSTE 361
>TAL2_ANASP (P48993) Transaldolase 2 (EC 2.2.1.2)| Length = 381 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = -3 Query: 454 LDAFIDHGTVARTIDANVSEAEGIYSALEK--LGIDWEEVGKQLEHEGVSSFKGSFDSLL 281 + A DH VA ++ V+EA + +L+ + ID V +L EG++ F F SL+ Sbjct: 309 ITACADHCEVANRVETGVAEAYQLIESLKDPDINIDINAVMDELLIEGINKFVQPFQSLM 368 Query: 280 TSLEEK 263 SLE K Sbjct: 369 NSLEGK 374
>OGFR_HUMAN (Q9NZT2) Opioid growth factor receptor (OGFr) (Zeta-type opioid| receptor) (7-60 protein) Length = 677 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%) Frame = -2 Query: 311 LLQGELRQPAHELGGE--GQRPQDCRQPVGAKI 219 L QG LR E+GG+ G+ Q CRQP+GA++ Sbjct: 419 LSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARV 451
>TAL2_NOSPU (P48983) Transaldolase 2 (EC 2.2.1.2)| Length = 381 Score = 33.9 bits (76), Expect = 0.21 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = -3 Query: 454 LDAFIDHGTVARTIDANVSEAEGIYSALEK--LGIDWEEVGKQLEHEGVSSFKGSFDSLL 281 + A DH V+ ++ +V+ A + L+ + ID + V +L EG+ F F SL+ Sbjct: 309 IKACADHCNVSDRLETDVNNAYTLIENLKDPDINIDLDTVMDELLVEGIDKFIQPFQSLM 368 Query: 280 TSLEEK 263 SLE+K Sbjct: 369 NSLEDK 374
>TAL_HELPJ (Q9ZJC5) Transaldolase (EC 2.2.1.2)| Length = 316 Score = 33.9 bits (76), Expect = 0.21 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = -3 Query: 457 ALDAFI-DHGTVARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSLL 281 AL+A++ D T +T ++E E L+ ID E ++L EG+ +FK SF+ LL Sbjct: 255 ALNAYLLDPNTECQT-PLKITEIEAFKKELKTHNIDLENTAQKLLKEGLIAFKQSFEKLL 313 Query: 280 TS 275 +S Sbjct: 314 SS 315
>TAL_HELPY (P56108) Transaldolase (EC 2.2.1.2)| Length = 316 Score = 33.1 bits (74), Expect = 0.36 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = -3 Query: 460 QALDAFI-DHGTVARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSL 284 +AL+A++ D T +T +E E L+ ID E ++L EG+ +FK SF+ L Sbjct: 254 EALNAYLLDPNTECQT-PLKTTEIEAFKKELKVHNIDLENTAQKLLKEGLIAFKQSFEKL 312 Query: 283 LTS 275 L+S Sbjct: 313 LSS 315
>BGAL_LACDE (P20043) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1006 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = -3 Query: 382 YSALEKL-----GIDWEEVGKQLEHEGVSSFKGSFDSLLTSLEEKGNALKTAANP*ALKL 218 Y+ALEK G W+ + + LE +G + G FD T E GN L A + KL Sbjct: 546 YTALEKYPHYQGGFIWDWIDQGLEKDGHLLYGGDFDDRPTDYEFCGNGLVFADRTESPKL 605 Query: 217 SDRMVWY 197 ++ Y Sbjct: 606 ANVKALY 612
>SYL_HAEI8 (Q4QLY8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = -3 Query: 463 DQALDAFIDHGTVARTIDANVSEAEGIYSA----LEKLGIDWEEVGKQLEHEGVS 311 D AF++HG + + + + + +G ++ LEKLG+ +V +L GVS Sbjct: 369 DLTKQAFVEHGKLVNSAEFDGKDFDGAFNGIADKLEKLGVGKRQVNYRLRDWGVS 423
>PURL_AQUAE (O67691) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 745 Score = 30.4 bits (67), Expect = 2.3 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = -3 Query: 463 DQALDAFIDHGTVARTIDANVSE-AEGIYSALEKLGIDWEEVGKQLEHEGVS-SFKGSFD 290 D+ D F R I S+ AE + +A+EK G++W +GK E + + +F G D Sbjct: 663 DERPDVFFFSENPTRVIIGVESDKAEEVKNAVEKAGLEWMYIGKTTEEKKIKVTFNG--D 720 Query: 289 SLL-TSLEEKGNALKTA 242 +LL LEE +T+ Sbjct: 721 TLLEDELEEYEKLWRTS 737
>PROS_DROME (P29617) Protein prospero| Length = 1403 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = +2 Query: 5 LAQKQLVGKRIAVASNRPQLHNDSQARLEYR 97 L Q+Q+ + +A A+ RPQ+H+ + ARL R Sbjct: 768 LQQQQMEQQHVATAAPRPQMHHPAPARLPTR 798
>TORD_SHEON (Q8EHJ0) Chaperone protein torD| Length = 217 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -3 Query: 454 LDAFIDHGT---VARTIDANVSEAEGIYSALEKLGIDWEEVGKQLEHEGVSS 308 LDA ID V + ++ + G YSAL L + W + KQL + ++S Sbjct: 159 LDACIDSWLAKFVVKVVECDSKHRNGFYSALASLTLAWVKQDKQLLEQTINS 210
>G6PI_ARAGE (Q9FXM5) Glucose-6-phosphate isomerase, cytosolic (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 560 Score = 29.3 bits (64), Expect = 5.2 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 6/117 (5%) Frame = +2 Query: 26 GKRIAVASNRPQLH------NDSQARLEYREAHPDNW*HFISKWKERASKLAFYSVIV*W 187 G+ I NR LH D+ + + + P+ W + + K KE + K+ S + Sbjct: 85 GEHINSTENRSVLHVALRAPKDAVIKADGKNVVPEVW-NVLDKIKEFSEKIRSGSWVGAT 143 Query: 188 PAPVPNHSIR*F*RLRVGGSLEGVALLLQAREQAVEAPLEGAHALVLQLLANLFPVD 358 P+ + + +GGS G + A + EA LE A L+ LAN+ PVD Sbjct: 144 GKPLKDVIA-----IGIGGSFLGPLFVHTALQTDPEA-LESAKGRQLRFLANIDPVD 194
>SYL_HAEIN (P43827) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = -3 Query: 463 DQALDAFIDHGTVARTIDANVSEAEGIYSA----LEKLGIDWEEVGKQLEHEGVS 311 D AF++HG + + + + +G ++ LEKLG+ +V +L GVS Sbjct: 369 DLTKQAFVEHGKLVNSDEFDGKNFDGAFNGIADKLEKLGVGKRQVNYRLRDWGVS 423
>ZN669_HUMAN (Q96BR6) Zinc finger protein 669| Length = 464 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Frame = -2 Query: 461 PSFGRIHRPRHSCQDNRRQRV-RSRGHI---QCPGEAGHXXXXXXXXXXXXXRELLQGEL 294 P+ R+ PRH ++ R + RSRG + PG AG E Sbjct: 19 PAVARLGPPRHRLRNLRTESPWRSRGSVLFCSGPGRAGRAA-----------------EP 61 Query: 293 RQPAHELGGEGQRPQDCRQPVGAKI 219 P G +RP+ CR+P+ + I Sbjct: 62 LHPVCTCGRHFRRPEPCREPLASPI 86
>YPDA_BACST (P21878) Hypothetical protein in pdhA 5'region (ORF1) (Fragment)| Length = 95 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = -3 Query: 436 HGTVARTIDANVSEAEGIYSALEKLGIDWEEV---GKQLEHEGVSSFKGSFDSLLTSLEE 266 H + A S+AEGI +EKLGID +V G L + SF G+ ++ + EE Sbjct: 8 HDVSTDVLPAGGSKAEGIRLMIEKLGIDKGDVYAFGDGLNDIEMLSFVGTGVAMGNAHEE 67 Query: 265 KGNALKTAANP*ALKLSDRMVWY 197 +K A+ +S+ +W+ Sbjct: 68 ----VKRVADFVTKPVSEEGIWH 86
>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55| antigen) [Contains: Complement decay-accelerating factor, GPI-anchored isoform] Length = 507 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -1 Query: 450 THSSTTAQLPGQSTPTCQKQRAYTVPWRSWASTGKRLASSW-STRA*APSRG 298 T STT +PG PT Q+ VP G + ++W ST P+ G Sbjct: 325 TQRSTTVNVPGTKVPTTQRSTTVNVP-------GTEVPTTWKSTTVNVPAAG 369
>IP5P1_ARATH (Q84MA2) Type I inositol-1,4,5-trisphosphate 5-phosphatase 1 (EC| 3.1.3.56) (At5PTase1) Length = 590 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -3 Query: 400 SEAEGIYSALEKLGIDWEEVGKQLEHEGVSSFKGSFDSL 284 S+ E +S E++G+ W E +L ++ VS +GSF S+ Sbjct: 287 SKREERFSYTERVGLSWPEPPLRLLNQYVSERRGSFKSV 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,858,678 Number of Sequences: 219361 Number of extensions: 1369929 Number of successful extensions: 4491 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4489 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
